Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G024700 Carya illinoinensis HOM05D005302 ORTHO05D006422 0.0e+00 1088.6 513 100.0
CiPaw.07G205300 Carya illinoinensis HOM05D005302 ORTHO05D006422 3.5e-254 881.3 513 79.9
Haze_21877 Corylus avellana HOM05D005302 ORTHO05D006422 5.1e-253 877.5 570 74.4
QL12p029391 Quercus lobata HOM05D005302 ORTHO05D006422 6.9e-242 840.5 531 75.3
Dinv14245 Davidia involucrata HOM05D005302 ORTHO05D006422 5.1e-237 824.3 462 80.7
FvH4_2g35770 Fragaria vesca HOM05D005302 ORTHO05D006422 6.2e-235 817.4 464 80.2
Eucgr.C02909 Eucalyptus grandis HOM05D005302 ORTHO05D006422 2.4e-234 815.5 522 73.4
TWI34G0390 Tripterygium wilfordii HOM05D005302 ORTHO05D006422 5.3e-234 814.3 464 79.7
Actinidia13324 Actinidia chinensis HOM05D005302 ORTHO05D006422 1.2e-233 813.1 446 81.6
Prupe.1G450300 Prunus persica HOM05D005302 ORTHO05D006422 1.2e-233 813.1 504 76.2
PGR044G1364 Punica granatum HOM05D005302 ORTHO05D006422 1.2e-233 813.1 462 78.8
CSS0027627 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 1.5e-233 812.8 499 75.4
Nn2g11666 Nelumbo nucifera HOM05D005302 ORTHO05D006422 1.5e-233 812.8 485 77.7
CSS0024291 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 2.0e-233 812.4 499 75.4
Manes.16G072000 Manihot esculenta HOM05D005302 ORTHO05D006422 2.6e-233 812.0 501 75.4
Gorai.009G050600 Gossypium raimondii HOM05D005302 ORTHO05D006422 1.0e-232 810.1 496 74.4
RcHm_v2.0_Chr6g0306001 Rosa chinensis HOM05D005302 ORTHO05D006422 3.8e-232 808.1 464 79.3
MD15G1095400 Malus domestica HOM05D005302 ORTHO05D006422 5.0e-232 807.7 513 73.9
Potri.018G040200 Populus trichocarpa HOM05D005302 ORTHO05D006422 5.0e-232 807.7 505 74.9
Gohir.D05G049300 Gossypium hirsutum HOM05D005302 ORTHO05D006422 1.1e-231 806.6 496 74.0
FAN27G3010 Fragaria x ananassa HOM05D005302 ORTHO05D006422 3.2e-231 805.1 464 79.5
Glyma.04G082500 Glycine max HOM05D005302 ORTHO05D006422 3.2e-231 805.1 465 77.6
TAR624G0168 Trochodendron aralioides HOM05D005302 ORTHO05D006422 1.2e-230 803.1 476 77.3
Rhsim02G0179400 Rhododendron simsii HOM05D005302 ORTHO05D006422 2.7e-230 802.0 446 80.0
Glyma.06G084100 Glycine max HOM05D005302 ORTHO05D006422 7.9e-230 800.4 428 82.5
Hma1.2p1_0393F.1_g143080 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 2.3e-229 798.9 486 75.5
GSVIVG01035645001 Vitis vinifera HOM05D005302 ORTHO05D006422 1.5e-228 796.2 483 75.6
Thecc.09G042800 Theobroma cacao HOM05D005302 ORTHO05D006422 2.5e-228 795.4 489 73.8
Atru.chr7.2133 Acer truncatum HOM05D005302 ORTHO05D006422 3.3e-228 795.0 480 76.2
MELO3C011150.2 Cucumis melo HOM05D005302 ORTHO05D006422 3.7e-227 791.6 507 73.2
CsaV3_2G030970 Cucumis sativus L. HOM05D005302 ORTHO05D006422 1.1e-226 790.0 505 73.3
MD08G1115600 Malus domestica HOM05D005302 ORTHO05D006422 4.1e-226 788.1 513 72.3
Aqoxy7G03804 Aquilegia oxysepala HOM05D005302 ORTHO05D006422 5.9e-225 784.3 466 76.2
COL.COLO4_18671 Corchorus olitorius HOM05D005302 ORTHO05D006422 5.9e-225 784.3 517 71.6
Duzib150G0232 Durio zibethinus HOM05D005302 ORTHO05D006422 5.9e-225 784.3 495 72.9
Lalb_Chr08g0243151 Lupinus albus HOM05D005302 ORTHO05D006422 1.3e-224 783.1 454 76.0
Medtr3g110160 Medicago truncatula HOM05D005302 ORTHO05D006422 1.3e-224 783.1 434 78.6
Sabra18G0040100 Salix brachista HOM05D005302 ORTHO05D006422 1.9e-223 779.2 504 72.6
Gorai.001G027200 Gossypium raimondii HOM05D005302 ORTHO05D006422 4.2e-223 778.1 495 71.9
arahy.Tifrunner.gnm1.ann1.P7Z4SB Arachis hypogaea HOM05D005302 ORTHO05D006422 7.2e-223 777.3 425 79.5
CANSAT25G0630 Cannabis sativa HOM05D005302 ORTHO05D006422 1.2e-222 776.5 502 73.1
Ciclev10008169m.g Citrus clementina HOM05D005302 ORTHO05D006422 2.7e-222 775.4 470 75.5
Cc08_g09240 Coffea canephora HOM05D005302 ORTHO05D006422 1.0e-221 773.5 433 78.8
VMungo1309G1003 Vigna mungo HOM05D005302 ORTHO05D006422 1.4e-221 773.1 455 75.6
Migut.A00220 Erythranthe guttata HOM05D005302 ORTHO05D006422 2.3e-221 772.3 447 74.9
Gohir.A07G022700 Gossypium hirsutum HOM05D005302 ORTHO05D006422 2.3e-221 772.3 496 71.6
Gohir.D07G026100 Gossypium hirsutum HOM05D005302 ORTHO05D006422 2.3e-221 772.3 496 71.4
Phvul.009G108200 Phaseolus vulgaris HOM05D005302 ORTHO05D006422 2.3e-221 772.3 446 76.7
arahy.Tifrunner.gnm1.ann1.R6A5BY Arachis hypogaea HOM05D005302 ORTHO05D006422 3.9e-221 771.5 423 79.2
Gohir.A05G047400 Gossypium hirsutum HOM05D005302 ORTHO05D006422 5.1e-221 771.2 474 73.8
Sed0007027 Sechium edule HOM05D005302 ORTHO05D006422 8.8e-221 770.4 507 70.4
Ca_15604_v3 Cicer arietinum L. HOM05D005302 ORTHO05D006422 2.0e-220 769.2 504 71.2
Lj1g0022106 Lotus japonicus HOM05D005302 ORTHO05D006422 2.0e-220 769.2 430 78.8
Psat5g022320 Pisum sativum HOM05D005302 ORTHO05D006422 4.8e-219 764.6 450 75.3
FAN20G2881 Fragaria x ananassa HOM05D005302 ORTHO05D006422 3.1e-218 761.9 503 72.0
MSTRG.11705 Avicennia marina HOM05D005302 ORTHO05D006422 1.5e-217 759.6 447 75.8
EL10Ac2g04046 Beta vulgaris HOM05D005302 ORTHO05D006422 1.5e-217 759.6 461 74.6
Peaxi162Scf00822g00210 Petunia axillaris HOM05D005302 ORTHO05D006422 7.7e-217 757.3 443 75.6
Sp7g30530 Schrenkiella parvula HOM05D005302 ORTHO05D006422 7.7e-217 757.3 478 72.6
Nitab4.5_0010908g0010 Nicotiana tabacum HOM05D005302 ORTHO05D006422 6.5e-216 754.2 485 70.3
SGA_v2.0_scaffold103G29944 Striga asiatica HOM05D005302 ORTHO05D006422 8.5e-216 753.8 454 73.6
CAN.G21.50 Capsicum annuum HOM05D005302 ORTHO05D006422 1.6e-214 749.6 427 77.0
Sopen08g022330 Solanum pennellii HOM05D005302 ORTHO05D006422 2.7e-214 748.8 435 76.8
PGSC0003DMG400029051 Solanum tuberosum HOM05D005302 ORTHO05D006422 6.1e-214 747.7 435 76.3
HanXRQChr08g0236291 Helianthus annuus HOM05D005302 ORTHO05D006422 7.9e-214 747.3 453 73.7
ECA246G0277 Erigeron canadensis HOM05D005302 ORTHO05D006422 1.4e-213 746.5 464 72.4
PSO210G0275 Papaver somniferum HOM05D005302 ORTHO05D006422 2.3e-213 745.7 465 72.7
Thhalv10025006m.g Eutrema salsugineum HOM05D005302 ORTHO05D006422 3.0e-213 745.3 465 72.0
CARHR240760 Cardamine hirsuta HOM05D005302 ORTHO05D006422 5.1e-213 744.6 445 74.8
AUR62009303 Chenopodium quinoa HOM05D005302 ORTHO05D006422 1.1e-212 743.4 499 70.1
DCAR_003119 Daucus carota HOM05D005302 ORTHO05D006422 1.1e-212 743.4 460 73.0
FAN15G3230 Fragaria x ananassa HOM05D005302 ORTHO05D006422 1.1e-212 743.4 494 70.9
Solyc08g068570.4 Solanum lycopersicum HOM05D005302 ORTHO05D006422 1.1e-212 743.4 515 68.2
PSO210G3865 Papaver somniferum HOM05D005302 ORTHO05D006422 3.3e-212 741.9 505 68.3
BolC7t46379H Brassica oleracea HOM05D005302 ORTHO05D006422 2.2e-211 739.2 430 75.6
Lj8C588T0 Lonicera japonica HOM05D005302 ORTHO05D006422 2.2e-211 739.2 531 67.8
SalBow4G1479 Salvia bowleyana HOM05D005302 ORTHO05D006422 2.8e-211 738.8 451 72.5
C07p59340 Brassica napus HOM05D005302 ORTHO05D006422 3.7e-211 738.4 430 75.6
MBI04_g05261_MAGBIO Magnolia biondii HOM05D005302 ORTHO05D006422 8.2e-211 737.3 562 63.7
AT4G32770 Arabidopsis thaliana HOM05D005302 ORTHO05D006422 1.1e-210 736.9 481 69.6
Carub.0007s0772 Capsella rubella HOM05D005302 ORTHO05D006422 1.8e-210 736.1 452 72.8
A03p61580 Brassica napus HOM05D005302 ORTHO05D006422 7.0e-210 734.2 486 70.2
BraA03t15200Z Brassica rapa HOM05D005302 ORTHO05D006422 7.0e-210 734.2 486 70.2
AL7G18970 Arabidopsis lyrata HOM05D005302 ORTHO05D006422 2.0e-209 732.6 480 69.6
ClCG08G012300 Citrullus lanatus HOM05D005302 ORTHO05D006422 4.5e-209 731.5 501 69.1
Aa31LG2G17190 Aethionema arabicum HOM05D005302 ORTHO05D006422 1.7e-208 729.6 469 71.4
CDE08G0186 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 8.0e-206 720.7 467 68.1
Lsat_1_v5_gn_5_33600 Lactuca sativa HOM05D005302 ORTHO05D006422 8.0e-206 720.7 439 73.8
Cfa013357 Carpinus fangiana HOM05D005302 ORTHO05D006422 5.7e-204 714.5 517 67.9
Os02g0276500 Oryza sativa ssp. japonica HOM05D005302 ORTHO05D006422 1.2e-201 706.8 430 72.6
unitig_32.g11070 Utricularia gibba HOM05D005302 ORTHO05D006422 2.9e-200 702.2 443 70.2
THA.LOC104803808 Tarenaya hassleriana HOM05D005302 ORTHO05D006422 3.2e-199 698.7 410 76.8
Nitab4.5_0000513g0060 Nicotiana tabacum HOM05D005302 ORTHO05D006422 1.4e-197 693.3 521 63.1
ATR0315G120 Amborella trichopoda HOM05D005302 ORTHO05D006422 2.3e-197 692.6 435 70.1
CDE05G0893 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 6.8e-197 691.0 448 66.5
Oeu036363.2 Olea europaea HOM05D005302 ORTHO05D006422 2.0e-196 689.5 461 70.7
Cfa013434 Carpinus fangiana HOM05D005302 ORTHO05D006422 5.4e-194 681.4 428 76.4
LjContig00226g0022694 Lotus japonicus HOM05D005302 ORTHO05D006422 1.7e-192 676.4 380 77.9
LjContig00518g0000858 Lotus japonicus HOM05D005302 ORTHO05D006422 1.7e-192 676.4 380 77.9
Hund19525 Selenicereus undatus HOM05D005302 ORTHO05D006422 6.5e-192 674.5 461 69.0
Cpa.g.sc7.259 Carica papaya HOM05D005302 ORTHO05D006422 5.5e-191 671.4 378 79.6
Cfa013356 Carpinus fangiana HOM05D005302 ORTHO05D006422 9.4e-191 670.6 677 55.1
AUR62041718 Chenopodium quinoa HOM05D005302 ORTHO05D006422 1.4e-189 666.8 461 68.8
Sc23g0005290 Simmondsia chinensis HOM05D005302 ORTHO05D006422 9.8e-188 660.6 436 69.3
Haze_21992 Corylus avellana HOM05D005302 ORTHO05D006422 1.0e-184 650.6 642 55.5
Lj1g0000494 Lotus japonicus HOM05D005302 ORTHO05D006422 5.0e-184 648.3 380 76.3
Ah.16g105570 Amaranthus hybridus HOM05D005302 ORTHO05D006422 8.0e-182 641.0 372 78.0
HPP92_005269 Vanilla planifolia HOM05D005302 ORTHO05D006422 2.9e-176 622.5 428 67.1
Lj1g0015489 Lotus japonicus HOM05D005302 ORTHO05D006422 3.3e-175 619.0 430 67.9
vmacro11066 Vaccinium macrocarpon HOM05D005302 ORTHO05D006422 1.2e-172 610.5 408 70.1
AagrBONN_evm.TU.Sc2ySwM_368.1981 Anthoceros agrestis HOM05D005302 ORTHO05D006422 6.0e-169 598.2 418 63.4
Mapoly0027s0036 Marchantia polymorpha HOM05D005302 ORTHO05D006422 1.2e-164 583.9 426 61.5
Pp3c7_470 Physcomitrium patens HOM05D005302 ORTHO05D006422 2.2e-163 579.7 465 57.2
Lj1g0026118 Lotus japonicus HOM05D005302 ORTHO05D006422 6.8e-157 558.1 431 63.1
SMO351G0603 Selaginella moellendorffii HOM05D005302 ORTHO05D006422 9.6e-151 537.7 396 59.1
Pp3c20_5100 Physcomitrium patens HOM05D005302 ORTHO05D006422 1.2e-150 537.3 455 54.5
Zm00001eb237270 Zea mays HOM05D005302 ORTHO05D006422 2.9e-147 526.2 321 70.7
CBR_g222 Chara braunii HOM05D005302 ORTHO05D006422 1.4e-141 507.3 427 55.7
Cc07_g15020 Coffea canephora HOM05D005302 ORTHO05D006422 1.3e-136 490.7 268 79.1
Hma1.2p1_1884F.1_g306470 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 3.3e-127 459.5 256 80.1
Lj7A704G80 Lonicera japonica HOM05D005302 ORTHO05D006422 2.4e-109 400.2 218 79.4
Cre01.g013801 Chlamydomonas reinhardtii HOM05D005302 ORTHO05D006422 1.5e-103 380.9 455 41.8
Hma1.2p1_1884F.1_g306480 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 4.4e-87 326.2 184 77.7
Lj7A704G81 Lonicera japonica HOM05D005302 ORTHO05D006422 1.0e-75 288.5 162 78.4
MCO11G337 Micromonas commoda HOM05D005302 ORTHO05D006422 1.0e-75 288.5 426 40.6
Hma1.2p1_0393F.1_g143070 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.0e-67 261.9 148 75.0
CDE05G2043 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 6.1e-65 252.7 429 36.1
Hma1.2p1_0393F.1_g143090 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 2.3e-59 234.2 187 64.2
Glyma.04G082300 Glycine max HOM05D005302 ORTHO05D006422 7.3e-58 229.2 174 66.1
SEGI_29042 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 3.6e-57 226.9 110 86.4
FAN24G1627 Fragaria x ananassa HOM05D005302 ORTHO05D006422 6.0e-52 209.5 118 79.7
SEGI_31241 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 7.3e-50 202.6 148 57.4
Sabra18G0041600 Salix brachista HOM05D005302 ORTHO05D006422 1.4e-45 188.3 109 74.3
Potri.006G240100 Populus trichocarpa HOM05D005302 ORTHO05D006422 7.3e-42 176.0 185 50.8
SEGI_07805 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 6.8e-40 169.5 125 64.8
arahy.Tifrunner.gnm1.ann1.B6YE6K Arachis hypogaea HOM05D005302 ORTHO05D006422 3.6e-33 147.1 186 45.2
Sabra18G0041700 Salix brachista HOM05D005302 ORTHO05D006422 2.3e-19 101.3 60 66.7
CDE05G1694 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 5.6e-18 96.7 61 65.6
CDE02G1858 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.4e-08 65.5 184 31.0
BcaC09g52073 Brassica carinata HOM05D002602 ORTHO05D002661 1.2e-07 62.4 41 61.0


User provided reference genes

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