Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G024600 Carya illinoinensis HOM05D003951 ORTHO05D005378 0.0e+00 1943.3 984 100.0
Cfa013355 Carpinus fangiana HOM05D003951 ORTHO05D005378 0.0e+00 1718.7 984 87.7
QL12p029450 Quercus lobata HOM05D003951 ORTHO05D005378 0.0e+00 1613.2 984 83.4
GSVIVG01035648001 Vitis vinifera HOM05D003951 ORTHO05D005378 0.0e+00 1589.3 986 80.7
Dinv30270 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1579.3 985 80.3
Prupe.1G450600 Prunus persica HOM05D003951 ORTHO05D005378 0.0e+00 1569.7 985 79.4
Thecc.09G042400 Theobroma cacao HOM05D003951 ORTHO05D005378 0.0e+00 1564.7 985 79.6
Dinv14244 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1547.7 954 80.2
CSS0015540 Camellia sinensis var. sinensis HOM05D003951 ORTHO05D005378 0.0e+00 1545.8 985 78.8
Hma1.2p1_0590F.1_g185010 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 0.0e+00 1543.5 985 78.5
TAR383G0035 Trochodendron aralioides HOM05D003951 ORTHO05D005378 0.0e+00 1542.7 985 78.7
Manes.03G061800 Manihot esculenta HOM05D003951 ORTHO05D005378 0.0e+00 1542.3 985 77.5
Cpa.g.sc7.257 Carica papaya HOM05D003951 ORTHO05D005378 0.0e+00 1540.4 983 77.1
Gohir.D06G093700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1540.4 985 77.8
Gorai.010G108200 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1538.1 983 77.7
Atru.chr7.2135 Acer truncatum HOM05D003951 ORTHO05D005378 0.0e+00 1532.3 985 77.8
Duzib187G0774 Durio zibethinus HOM05D003951 ORTHO05D005378 0.0e+00 1527.3 993 77.0
RcHm_v2.0_Chr6g0305971 Rosa chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1526.9 986 77.2
Gohir.A06G094100 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1523.1 985 76.9
MD08G1115900 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1522.7 985 76.9
CANSAT25G2930 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1519.6 985 76.0
MD15G1095600 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1518.4 985 76.6
Nn2g11661 Nelumbo nucifera HOM05D003951 ORTHO05D005378 0.0e+00 1515.0 983 76.8
Potri.018G039800 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1515.0 979 76.7
TWI32G0786 Tripterygium wilfordii HOM05D003951 ORTHO05D005378 0.0e+00 1514.2 985 75.9
Ciclev10007348m.g Citrus clementina HOM05D003951 ORTHO05D005378 0.0e+00 1506.1 985 76.2
Sabra18G0039700 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1503.8 978 76.3
Gohir.A13G186000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1502.3 986 76.0
Gohir.D13G192700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1502.3 986 75.8
Lalb_Chr08g0243161 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1501.1 984 75.2
Gorai.013G218700 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1498.4 986 75.6
Glyma.06G083700 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1494.2 985 75.1
Aqoxy7G01531 Aquilegia oxysepala HOM05D003951 ORTHO05D005378 0.0e+00 1493.8 984 73.9
FvH4_2g35850 Fragaria vesca HOM05D003951 ORTHO05D005378 0.0e+00 1493.4 986 75.7
Glyma.04G082000 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1491.1 985 75.3
FAN15G0863 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1488.4 986 75.5
Potri.006G240300 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1488.4 985 76.0
FAN20G1017 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1486.9 986 75.5
FAN27G3265 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1486.1 986 75.3
Lj1g0011830 Lotus japonicus HOM05D003951 ORTHO05D005378 0.0e+00 1486.1 986 74.0
VMungo1309G1090 Vigna mungo HOM05D003951 ORTHO05D005378 0.0e+00 1478.8 986 74.4
Sabra06G0187900 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1478.0 1008 73.8
arahy.Tifrunner.gnm1.ann1.6KB6B4 Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1477.6 985 73.9
Gorai.004G290400 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1477.6 971 76.1
arahy.Tifrunner.gnm1.ann1.ZA6ZKK Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1477.2 985 73.7
Psat5g022720 Pisum sativum HOM05D003951 ORTHO05D005378 0.0e+00 1475.3 985 73.9
Gohir.D08G272000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1474.5 978 75.5
Lalb_Chr23g0269551 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1467.2 984 74.4
Ca_15606_v3 Cicer arietinum L. HOM05D003951 ORTHO05D005378 0.0e+00 1466.1 986 73.8
Medtr3g110140 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1464.9 985 73.9
Gohir.A08G250500 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1463.7 978 75.1
MBI04_g14936_MAGBIO Magnolia biondii HOM05D003951 ORTHO05D005378 0.0e+00 1463.7 987 73.6
TPR.G1335 Trifolium pratense HOM05D003951 ORTHO05D005378 0.0e+00 1459.1 985 73.8
Phvul.009G107800 Phaseolus vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1458.0 985 73.2
Eucgr.C02905 Eucalyptus grandis HOM05D003951 ORTHO05D005378 0.0e+00 1451.8 981 72.7
PGR044G0887 Punica granatum HOM05D003951 ORTHO05D005378 0.0e+00 1449.5 985 73.0
Cc06_g04830 Coffea canephora HOM05D003951 ORTHO05D005378 0.0e+00 1444.9 965 72.6
MSTRG.19211 Avicennia marina HOM05D003951 ORTHO05D005378 0.0e+00 1444.5 985 72.2
CANSAT56G2409 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1443.3 992 73.3
Sc23g0005190 Simmondsia chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1442.6 984 73.1
MELO3C011151.2 Cucumis melo HOM05D003951 ORTHO05D005378 0.0e+00 1441.0 979 71.5
Nitab4.5_0010350g0010 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1441.0 985 71.8
Hund19527 Selenicereus undatus HOM05D003951 ORTHO05D005378 0.0e+00 1440.6 985 71.7
ClCG08G012310 Citrullus lanatus HOM05D003951 ORTHO05D005378 0.0e+00 1439.1 985 71.4
Oeu038879.1 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1438.3 985 72.0
CANSAT56G0789 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1437.2 991 73.1
Thhalv10012570m.g Eutrema salsugineum HOM05D003951 ORTHO05D005378 0.0e+00 1437.2 980 72.7
vmacro10453 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 0.0e+00 1435.2 1007 73.1
CsaV3_2G030980 Cucumis sativus L. HOM05D003951 ORTHO05D005378 0.0e+00 1434.1 979 71.1
Sed0007642 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1433.3 983 71.3
Nitab4.5_0008726g0020 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1431.8 985 70.9
Migut.J00480 Erythranthe guttata HOM05D003951 ORTHO05D005378 0.0e+00 1431.4 985 71.9
Sp6g32040 Schrenkiella parvula HOM05D003951 ORTHO05D005378 0.0e+00 1431.0 985 72.2
A10p26200 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1427.9 985 72.1
Nitab4.5_0000132g0420 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1427.9 985 71.3
BcaNung01934 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1427.5 985 72.1
Sed0024259 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1422.5 983 70.3
DCAR_004489 Daucus carota HOM05D003951 ORTHO05D005378 0.0e+00 1420.6 1081 67.6
BcaB08g37043 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1419.8 980 72.0
C02p05210 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1419.4 985 71.5
BcaC03g13375 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1418.7 985 71.3
CARHR201660 Cardamine hirsuta HOM05D003951 ORTHO05D005378 0.0e+00 1417.1 985 71.3
BraA10t44677Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1416.0 1005 70.6
PSO210G0075 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1414.8 986 71.4
BcaC04g19214 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1413.3 986 71.4
C09p65250 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1412.1 986 71.4
PSO210G7231 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1411.4 986 71.2
Sopen09g003410 Solanum pennellii HOM05D003951 ORTHO05D005378 0.0e+00 1411.4 988 69.4
Solyc09g008610.4 Solanum lycopersicum HOM05D003951 ORTHO05D005378 0.0e+00 1410.2 985 69.5
AT5G11560 Arabidopsis thaliana HOM05D003951 ORTHO05D005378 0.0e+00 1409.8 985 71.1
Peaxi162Scf01195g00118 Petunia axillaris HOM05D003951 ORTHO05D005378 0.0e+00 1409.4 978 70.6
EL10Ac2g04048 Beta vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1409.0 985 70.1
BolC2t06471H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1408.3 1000 70.5
Carub.0006s1003 Capsella rubella HOM05D003951 ORTHO05D005378 0.0e+00 1406.7 985 71.0
AL6G22230 Arabidopsis lyrata HOM05D003951 ORTHO05D005378 0.0e+00 1403.3 985 70.5
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 0.0e+00 1401.3 900 78.0
SalBow3G1921 Salvia bowleyana HOM05D003951 ORTHO05D005378 0.0e+00 1401.0 986 70.9
PGSC0003DMG400012982 Solanum tuberosum HOM05D003951 ORTHO05D005378 0.0e+00 1401.0 985 69.0
HanXRQChr08g0221151 Helianthus annuus HOM05D003951 ORTHO05D005378 0.0e+00 1392.9 986 71.4
ECA233G3193 Erigeron canadensis HOM05D003951 ORTHO05D005378 0.0e+00 1389.0 955 71.5
BolC9t59353H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1387.5 1012 69.1
THA.LOC104814774 Tarenaya hassleriana HOM05D003951 ORTHO05D005378 0.0e+00 1384.8 985 70.4
CAN.G1759.1 Capsicum annuum HOM05D003951 ORTHO05D005378 0.0e+00 1384.0 953 70.6
SGA_v2.0_scaffold657G53382 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1378.6 989 68.8
Oeu017004.2 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1377.1 1080 65.1
Lsat_1_v5_gn_6_63741 Lactuca sativa HOM05D003951 ORTHO05D005378 0.0e+00 1372.8 1008 68.3
BraA02t05087Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1349.7 1000 68.2
ATR0315G102 Amborella trichopoda HOM05D003951 ORTHO05D005378 0.0e+00 1336.2 985 67.4
AUR62041721 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1327.8 985 67.5
AUR62043518 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1327.8 985 67.6
CDE09G1231 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 0.0e+00 1306.6 978 64.9
A02p01070 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1297.3 985 66.9
AUR62009306 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1293.1 985 65.7
Aa31LG3G15640 Aethionema arabicum HOM05D003951 ORTHO05D005378 0.0e+00 1292.7 985 67.0
Lj8A588G18 Lonicera japonica HOM05D003951 ORTHO05D005378 0.0e+00 1292.7 968 67.4
Nitab4.5_0004281g0080 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1285.8 898 70.0
Os05g0230600 Oryza sativa ssp. japonica HOM05D003951 ORTHO05D005378 0.0e+00 1278.1 984 63.4
Ah.16g105420 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1253.4 1013 63.2
Medtr3g110090 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1245.7 847 72.6
Zm00001eb350390 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1239.6 981 62.0
Zm00001eb284300 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1233.0 981 61.7
SGA_v2.0_scaffold40G15445 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1163.3 881 65.8
Ah.10g035090 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1158.7 847 66.2
Haze_16526 Corylus avellana HOM05D003951 ORTHO05D005378 0.0e+00 1127.1 658 85.3
CDE02G1137 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 0.0e+00 1124.4 952 59.5
SHI18663 Sapria himalayana HOM05D003951 ORTHO05D005378 0.0e+00 1110.1 809 68.1
Mapoly0001s0045 Marchantia polymorpha HOM05D003951 ORTHO05D005378 2.8e-292 1008.8 978 52.0
Pp3c24_6940 Physcomitrium patens HOM05D003951 ORTHO05D005378 7.6e-290 1000.7 997 51.5
Actinidia14667 Actinidia chinensis HOM05D003951 ORTHO05D005378 3.6e-263 912.1 541 81.9
Ah.16g105540 Amaranthus hybridus HOM05D003951 ORTHO05D005378 1.0e-254 884.0 688 63.5
SMO361G0709 Selaginella moellendorffii HOM05D003951 ORTHO05D005378 5.4e-251 871.7 954 48.5
Lj7A704G78 Lonicera japonica HOM05D003951 ORTHO05D005378 1.8e-243 846.7 658 65.0
AagrBONN_evm.TU.Sc2ySwM_228.1359 Anthoceros agrestis HOM05D003951 ORTHO05D005378 9.9e-213 744.6 887 43.2
Ah.16g105530 Amaranthus hybridus HOM05D003951 ORTHO05D005378 3.2e-211 739.6 529 69.0
Actinidia15735 Actinidia chinensis HOM05D003951 ORTHO05D005378 2.4e-195 686.8 809 49.9
TAR626G1339 Trochodendron aralioides HOM05D003951 ORTHO05D005378 5.3e-174 615.9 362 82.9
HPP92_003925 Vanilla planifolia HOM05D003951 ORTHO05D005378 1.8e-161 574.3 917 40.0
Actinidia14668 Actinidia chinensis HOM05D003951 ORTHO05D005378 2.2e-156 557.4 422 68.5
Haze_16527 Corylus avellana HOM05D003951 ORTHO05D005378 6.5e-148 529.3 296 89.9
Lj7C704T11 Lonicera japonica HOM05D003951 ORTHO05D005378 1.1e-142 511.9 296 86.1
Gohir.A08G250566 Gossypium hirsutum HOM05D003951 ORTHO05D005378 1.3e-135 488.4 282 84.0
CBR_g46228 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-134 484.6 853 35.4
TAR626G0188 Trochodendron aralioides HOM05D003951 ORTHO05D005378 1.8e-121 441.4 257 84.4
TAR626G1232 Trochodendron aralioides HOM05D003951 ORTHO05D005378 4.9e-119 433.3 333 66.7
vmacro07087 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 2.5e-115 421.0 663 43.4
PRCOL_00001466 Prasinoderma coloniale HOM05D003951 ORTHO05D005378 4.7e-114 416.8 1046 30.4
Cre01.g042550 Chlamydomonas reinhardtii HOM05D003951 ORTHO05D005378 5.4e-110 403.3 1025 32.2
Hma1.2p1_1163F.1_g262790 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 1.5e-96 358.6 319 58.9
unitig_22.g5110 Utricularia gibba HOM05D003951 ORTHO05D020105 3.1e-89 334.3 373 47.5
Actinidia13321 Actinidia chinensis HOM05D003951 ORTHO05D005378 2.4e-86 324.7 257 65.8
MCO05G363 Micromonas commoda HOM05D003951 ORTHO05D005378 1.4e-81 308.9 428 41.1
Psat2g043440 Pisum sativum HOM05D003951 ORTHO05D005378 6.9e-81 306.6 359 49.0
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 1.5e-67 262.3 276 51.4
Nn3g18131 Nelumbo nucifera HOM05D003951 ORTHO05D005378 1.4e-57 229.2 147 81.0
Actinidia31233 Actinidia chinensis HOM05D006865 ORTHO05D009005 1.1e-54 219.5 139 74.1
CBR_g46226 Chara braunii HOM05D003951 ORTHO05D005378 7.2e-54 216.9 184 57.6
BcaB01g05473 Brassica carinata HOM05D003951 ORTHO05D005378 1.4e-52 212.6 129 78.3
C03p05840 Brassica napus HOM05D003951 ORTHO05D005378 1.5e-51 209.1 125 80.0
DCAR_004486 Daucus carota HOM05D003951 ORTHO05D035008 1.0e-47 196.4 155 63.9
BolC3t13096H Brassica oleracea HOM05D003951 ORTHO05D005378 1.9e-46 192.2 125 76.0
BolC3t13097H Brassica oleracea HOM05D003951 ORTHO05D020105 5.3e-41 174.1 107 79.4
BcaB01g05472 Brassica carinata HOM05D003951 ORTHO05D020105 1.2e-40 172.9 107 79.4
C03p05850 Brassica napus HOM05D003951 ORTHO05D020105 1.2e-40 172.9 107 79.4
Peaxi162Scf00110g00822 Petunia axillaris HOM05D003951 ORTHO05D005378 3.8e-39 167.9 200 52.0
Cfa023291 Carpinus fangiana HOM05D003951 ORTHO05D005378 9.1e-33 146.7 339 31.3
CiPaw.07G205600 Carya illinoinensis HOM05D003951 ORTHO05D005378 4.5e-32 144.4 81 81.5
Hma1.2p1_1163F.1_g262780 Hydrangea macrophylla HOM05D003951 ORTHO05D033496 1.7e-31 142.5 85 84.7
CiPaw.07G205500 Carya illinoinensis HOM05D003951 ORTHO05D020105 6.5e-23 114.0 72 83.3
BraA03t09844Z Brassica rapa HOM05D003951 ORTHO05D033496 5.5e-22 110.9 149 49.7
A03p05100 Brassica napus HOM05D003951 ORTHO05D033496 1.6e-21 109.4 121 56.2
EL10Ac6g13930 Beta vulgaris HOM05D001881 ORTHO05D001856 1.2e-19 103.2 62 77.4
Peaxi162Scf00110g00821 Petunia axillaris HOM05D003951 ORTHO05D035008 3.4e-19 101.7 82 56.1
Dinv34398 Davidia involucrata HOM05D003951 ORTHO05D005378 9.8e-19 100.1 63 77.8
Peaxi162Scf00110g00823 Petunia axillaris HOM05D003951 ORTHO05D305850 1.3e-18 99.8 183 36.1
CAN.G541.23 Capsicum annuum HOM05D004796 ORTHO05D006527 1.4e-17 96.3 53 83.0
TAR629G0021 Trochodendron aralioides HOM05D003951 ORTHO05D000285 2.4e-17 95.5 188 38.3
Ah.04g155890 Amaranthus hybridus HOM05D003518 ORTHO05D031015 9.1e-17 93.6 60 71.7
Nn3g18130 Nelumbo nucifera HOM05D003951 ORTHO05D020105 2.0e-16 92.4 70 68.6
SHI18664 Sapria himalayana HOM05D003951 ORTHO05D020105 1.3e-15 89.7 140 43.6
Ah.05g173020 Amaranthus hybridus HOM05D003951 ORTHO05D031015 8.6e-15 87.0 60 66.7
Ah.05g172920 Amaranthus hybridus HOM05D003951 ORTHO05D031015 1.9e-14 85.9 60 66.7
Psat6g121680 Pisum sativum HOM05D000840 ORTHO05D000670 3.3e-14 85.1 47 78.7
Ah.04g157730 Amaranthus hybridus HOM05D031501 ORTHO05D060762 1.0e-07 63.5 37 81.1


User provided reference genes

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