Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G019500 Carya illinoinensis HOM05D006939 ORTHO05D008616 5.9e-169 597.4 299 100.0
QL12p025112 Quercus lobata HOM05D006939 ORTHO05D008616 4.1e-138 495.0 320 79.4
CiPaw.07G213000 Carya illinoinensis HOM05D006939 ORTHO05D008616 5.6e-135 484.6 314 79.3
Dinv25196 Davidia involucrata HOM05D006939 ORTHO05D008616 1.4e-130 469.9 322 73.9
TAR369G0747 Trochodendron aralioides HOM05D006939 ORTHO05D008616 2.3e-128 462.6 322 73.3
CSS0002269 Camellia sinensis var. sinensis HOM05D006939 ORTHO05D008616 2.5e-127 459.1 326 72.4
GSVIVG01035522001 Vitis vinifera HOM05D006939 ORTHO05D008616 1.8e-125 453.0 324 72.5
Glyma.04G075200 Glycine max HOM05D006939 ORTHO05D008616 1.9e-122 443.0 321 71.0
Duzib168G0459 Durio zibethinus HOM05D006939 ORTHO05D008616 4.2e-122 441.8 325 70.8
Nn8g40552 Nelumbo nucifera HOM05D006939 ORTHO05D008616 4.2e-122 441.8 317 71.0
Thecc.09G006900 Theobroma cacao HOM05D006939 ORTHO05D008616 7.1e-122 441.0 316 71.8
Ca_15668_v3 Cicer arietinum L. HOM05D006939 ORTHO05D008616 2.1e-121 439.5 319 71.5
Lj1g0013260 Lotus japonicus HOM05D006939 ORTHO05D008616 2.7e-121 439.1 316 71.8
VMungo1309G0618 Vigna mungo HOM05D006939 ORTHO05D008616 4.6e-121 438.3 322 69.9
Gorai.009G068000 Gossypium raimondii HOM05D006939 ORTHO05D008616 6.0e-121 438.0 319 70.2
Gohir.D05G067200 Gossypium hirsutum HOM05D006939 ORTHO05D008616 1.3e-120 436.8 319 69.9
Lj8C13T0 Lonicera japonica HOM05D006939 ORTHO05D008616 1.7e-120 436.4 317 71.9
TWI63G0558 Tripterygium wilfordii HOM05D006939 ORTHO05D008616 1.7e-120 436.4 317 71.0
Glyma.06G076400 Glycine max HOM05D006939 ORTHO05D008616 5.1e-120 434.9 321 69.5
Ciclev10008814m.g Citrus clementina HOM05D006939 ORTHO05D008616 4.3e-119 431.8 319 70.2
Gohir.A05G064600 Gossypium hirsutum HOM05D006939 ORTHO05D008616 4.3e-119 431.8 321 69.8
arahy.Tifrunner.gnm1.ann1.8I4SMW Arachis hypogaea HOM05D006939 ORTHO05D008616 8.1e-118 427.6 310 70.6
arahy.Tifrunner.gnm1.ann1.WZEV1S Arachis hypogaea HOM05D006939 ORTHO05D008616 1.1e-117 427.2 310 70.6
Manes.03G003600 Manihot esculenta HOM05D006939 ORTHO05D008616 1.1e-117 427.2 321 69.5
Atru.chr7.2637 Acer truncatum HOM05D006939 ORTHO05D008616 1.4e-117 426.8 325 68.6
Cc02_g39540 Coffea canephora HOM05D006939 ORTHO05D008616 5.8e-116 421.4 323 67.8
MBI16_g38081_MAGBIO Magnolia biondii HOM05D006939 ORTHO05D008616 5.8e-116 421.4 315 69.5
Sed0018205 Sechium edule HOM05D006939 ORTHO05D008616 1.7e-115 419.9 322 68.9
CsaV3_2G031410 Cucumis sativus L. HOM05D006939 ORTHO05D008616 3.8e-115 418.7 310 71.0
MELO3C011191.2 Cucumis melo HOM05D006939 ORTHO05D008616 9.3e-114 414.1 310 70.6
Eucgr.C04007 Eucalyptus grandis HOM05D006939 ORTHO05D008616 2.1e-113 412.9 323 66.9
Actinidia06924 Actinidia chinensis HOM05D006939 ORTHO05D008616 2.7e-113 412.5 322 66.8
CANSAT25G1759 Cannabis sativa HOM05D006939 ORTHO05D008616 1.8e-112 409.8 327 65.7
Aqoxy7G02987 Aquilegia oxysepala HOM05D006939 ORTHO05D008616 3.0e-112 409.1 321 66.7
Lalb_Chr08g0243571 Lupinus albus HOM05D006939 ORTHO05D008616 5.1e-112 408.3 318 67.6
Medtr3g108805 Medicago truncatula HOM05D006939 ORTHO05D008616 8.7e-112 407.5 317 67.2
TPR.G12361 Trifolium pratense HOM05D006939 ORTHO05D008616 1.1e-111 407.1 312 68.3
Sc09g0010200 Simmondsia chinensis HOM05D006939 ORTHO05D008616 3.3e-111 405.6 317 67.5
Lj8C69T1 Lonicera japonica HOM05D006939 ORTHO05D008616 2.8e-110 402.5 298 70.8
PGR044G1028 Punica granatum HOM05D006939 ORTHO05D008616 2.8e-110 402.5 321 66.4
PGSC0003DMG400001838 Solanum tuberosum HOM05D006939 ORTHO05D008616 1.8e-109 399.8 326 65.3
THA.LOC104814976 Tarenaya hassleriana HOM05D006939 ORTHO05D008616 1.8e-109 399.8 321 63.2
Prupe.1G460400 Prunus persica HOM05D006939 ORTHO05D008616 2.4e-109 399.4 316 64.6
Potri.018G005900 Populus trichocarpa HOM05D006939 ORTHO05D008616 2.6e-108 396.0 324 65.1
Sabra18G0011600 Salix brachista HOM05D006939 ORTHO05D008616 2.6e-108 396.0 323 64.7
Sabra18G0014100 Salix brachista HOM05D006939 ORTHO05D008616 2.6e-108 396.0 323 64.7
SalBow7G0985 Salvia bowleyana HOM05D006939 ORTHO05D008616 2.6e-108 396.0 325 65.8
Migut.M00074 Erythranthe guttata HOM05D006939 ORTHO05D008616 5.8e-108 394.8 324 65.4
Hund19405 Selenicereus undatus HOM05D006939 ORTHO05D008616 7.6e-108 394.4 345 61.7
Sopen08g026100 Solanum pennellii HOM05D006939 ORTHO05D008616 9.9e-108 394.0 324 63.6
PSO063G0559 Papaver somniferum HOM05D006939 ORTHO05D008616 3.8e-107 392.1 322 64.0
Solyc08g077520.3 Solanum lycopersicum HOM05D006939 ORTHO05D008616 3.8e-107 392.1 324 63.3
AUR62020602 Chenopodium quinoa HOM05D006939 ORTHO05D008616 6.4e-107 391.3 305 67.2
PSO170G5391 Papaver somniferum HOM05D006939 ORTHO05D008616 8.4e-107 391.0 322 63.7
AUR62009066 Chenopodium quinoa HOM05D006939 ORTHO05D008616 1.4e-106 390.2 317 65.3
vmacro04127 Vaccinium macrocarpon HOM05D006939 ORTHO05D008616 1.9e-106 389.8 274 70.8
HanXRQChr12g0379171 Helianthus annuus HOM05D006939 ORTHO05D008616 7.1e-106 387.9 323 62.8
ECA240G2907 Erigeron canadensis HOM05D006939 ORTHO05D008616 3.5e-105 385.6 322 63.4
CAN.G1445.9 Capsicum annuum HOM05D006939 ORTHO05D008616 6.0e-105 384.8 319 64.3
Haze_21731 Corylus avellana HOM05D006939 ORTHO05D008616 6.0e-105 384.8 245 78.8
CDE02G0224 Ceratophyllum demersum HOM05D006939 ORTHO05D008616 7.9e-105 384.4 317 63.7
HPP92_017403 Vanilla planifolia HOM05D006939 ORTHO05D008616 1.3e-104 383.6 321 62.9
Peaxi162Scf00084g00007 Petunia axillaris HOM05D006939 ORTHO05D008616 1.8e-104 383.3 294 67.3
MD15G1108100 Malus domestica HOM05D006939 ORTHO05D008616 7.4e-103 377.9 315 62.2
RcHm_v2.0_Chr6g0304951 Rosa chinensis HOM05D006939 ORTHO05D008616 9.6e-103 377.5 321 61.1
Cfa013266 Carpinus fangiana HOM05D006939 ORTHO05D008616 1.6e-102 376.7 229 81.2
Psat5g025040 Pisum sativum HOM05D006939 ORTHO05D008616 9.0e-101 370.9 310 64.2
ClCG08G012690 Citrullus lanatus HOM05D006939 ORTHO05D008616 1.2e-100 370.5 310 66.1
C03p05420 Brassica napus HOM05D006939 ORTHO05D008616 1.0e-99 367.5 314 60.8
DCAR_015445 Daucus carota HOM05D006939 ORTHO05D008616 1.0e-99 367.5 315 60.6
Sp6g32750 Schrenkiella parvula HOM05D006939 ORTHO05D008616 1.7e-99 366.7 314 61.5
MSTRG.14901 Avicennia marina HOM05D006939 ORTHO05D008616 2.2e-99 366.3 317 61.5
A03p04710 Brassica napus HOM05D006939 ORTHO05D008616 2.2e-99 366.3 314 60.8
Rhsim13G0217600 Rhododendron simsii HOM05D006939 ORTHO05D008616 3.8e-99 365.5 408 50.7
Aa31LG3G16420 Aethionema arabicum HOM05D006939 ORTHO05D008616 4.9e-99 365.2 318 58.2
BcaB01g05506 Brassica carinata HOM05D006939 ORTHO05D008616 6.5e-99 364.8 314 60.5
BraA03t09811Z Brassica rapa HOM05D006939 ORTHO05D008616 1.9e-98 363.2 314 60.2
BcaB01g06272 Brassica carinata HOM05D006939 ORTHO05D008616 3.5e-97 359.0 314 60.2
EL10Ac2g03752 Beta vulgaris HOM05D006939 ORTHO05D008616 1.0e-96 357.5 313 61.3
CARHR202610 Cardamine hirsuta HOM05D006939 ORTHO05D008616 1.0e-96 357.5 308 59.7
FAN20G0593 Fragaria x ananassa HOM05D006939 ORTHO05D008616 5.1e-96 355.1 321 58.3
BolC3t13053H Brassica oleracea HOM05D006939 ORTHO05D008616 1.1e-95 354.0 298 61.1
FAN27G1343 Fragaria x ananassa HOM05D006939 ORTHO05D008616 1.1e-95 354.0 321 58.3
Carub.0006s0918 Capsella rubella HOM05D006939 ORTHO05D008616 1.5e-95 353.6 317 58.4
ATR0580G399 Amborella trichopoda HOM05D006939 ORTHO05D008616 3.3e-95 352.4 309 57.9
Oeu040447.1 Olea europaea HOM05D006939 ORTHO05D008616 5.7e-95 351.7 280 66.1
FvH4_2g36790 Fragaria vesca HOM05D006939 ORTHO05D008616 9.7e-95 350.9 313 58.5
SGA_v2.0_scaffold73G24476 Striga asiatica HOM05D006939 ORTHO05D008616 3.7e-94 349.0 321 59.5
Zm00001eb048210 Zea mays HOM05D006939 ORTHO05D008616 6.3e-94 348.2 304 56.9
FAN15G1628 Fragaria x ananassa HOM05D006939 ORTHO05D008616 1.4e-93 347.1 302 59.6
AL6G21250 Arabidopsis lyrata HOM05D006939 ORTHO05D008616 2.6e-92 342.8 321 55.8
DCAR_026761 Daucus carota HOM05D006939 ORTHO05D008616 1.4e-90 337.0 317 58.7
Lsat_1_v5_gn_5_46220 Lactuca sativa HOM05D006939 ORTHO05D008616 3.6e-89 332.4 302 61.9
unitig_61.g26486 Utricularia gibba HOM05D006939 ORTHO05D008616 6.1e-89 331.6 304 60.5
Thhalv10014111m.g Eutrema salsugineum HOM05D006939 ORTHO05D008616 1.8e-88 330.1 329 56.8
Nitab4.5_0006135g0050 Nicotiana tabacum HOM05D006939 ORTHO05D008616 5.1e-88 328.6 277 62.8
EL10Ac5g10928 Beta vulgaris HOM05D006939 ORTHO05D008616 2.9e-83 312.8 264 62.9
SGA_v2.0_scaffold49G18392 Striga asiatica HOM05D002257 ORTHO05D008616 1.4e-82 310.5 314 55.4
Nitab4.5_0001255g0030 Nicotiana tabacum HOM05D006939 ORTHO05D008616 9.4e-82 307.8 298 57.4
AT5G10710 Arabidopsis thaliana HOM05D006939 ORTHO05D008616 9.1e-77 291.2 321 50.2
Phvul.009G101000 Phaseolus vulgaris HOM05D006939 ORTHO05D008616 3.2e-74 282.7 174 76.4
Aqoxy1G02501 Aquilegia oxysepala HOM05D006939 ORTHO05D008616 3.3e-42 176.4 227 48.0
MBI16_g27300_MAGBIO Magnolia biondii HOM05D006939 ORTHO05D008616 1.8e-40 170.6 182 50.0
Aqoxy3G02235 Aquilegia oxysepala HOM05D006939 ORTHO05D008616 4.0e-40 169.5 121 66.9
SHI21120 Sapria himalayana HOM05D006939 ORTHO05D008616 6.8e-40 168.7 241 46.9
MD08G1128700 Malus domestica HOM05D006939 ORTHO05D008616 3.9e-35 152.9 170 52.9
Pp3c6_9310 Physcomitrium patens HOM05D006939 ORTHO05D008616 1.1e-32 144.8 301 32.6
AagrBONN_evm.TU.Sc2ySwM_228.595 Anthoceros agrestis HOM05D006939 ORTHO05D008616 2.6e-31 140.2 288 34.7
AagrBONN_evm.TU.Sc2ySwM_344.1051 Anthoceros agrestis HOM05D006939 ORTHO05D008616 7.5e-31 138.7 291 33.3
SMO119G0385 Selaginella moellendorffii HOM05D006939 ORTHO05D008616 2.2e-30 137.1 245 34.7
CDE05G2180 Ceratophyllum demersum HOM05D006939 ORTHO05D008616 5.4e-29 132.5 138 51.4
Mapoly0042s0046 Marchantia polymorpha HOM05D006939 ORTHO05D008616 6.0e-28 129.0 305 32.8
BcaB01g06274 Brassica carinata HOM05D006939 ORTHO05D008616 2.5e-26 123.6 113 60.2
Pp3c5_16590 Physcomitrium patens HOM05D006939 ORTHO05D008616 3.3e-26 123.2 311 28.0
Os04g0284100 Oryza sativa ssp. japonica HOM05D006939 ORTHO05D008616 2.4e-21 107.1 77 63.6
COL.COLO4_19037 Corchorus olitorius HOM05D000039 ORTHO05D000870 7.8e-20 102.1 218 36.7


User provided reference genes

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