Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G014900 Carya illinoinensis HOM05D005141 ORTHO05D006250 3.1e-243 844.7 437 100.0
CiPaw.07G218200 Carya illinoinensis HOM05D005141 ORTHO05D006250 1.1e-190 670.2 437 80.1
Cfa021484 Carpinus fangiana HOM05D005141 ORTHO05D006250 6.0e-178 627.9 432 78.0
Haze_21614 Corylus avellana HOM05D005141 ORTHO05D006250 2.4e-174 615.9 439 76.8
QL12p031441 Quercus lobata HOM05D005141 ORTHO05D006250 5.1e-161 571.6 404 76.7
Prupe.1G467500 Prunus persica HOM05D005141 ORTHO05D006250 1.8e-150 536.6 442 66.7
RcHm_v2.0_Chr6g0312851 Rosa chinensis HOM05D005141 ORTHO05D006250 1.3e-145 520.4 444 64.4
FAN27G2430 Fragaria x ananassa HOM05D005141 ORTHO05D006250 3.4e-141 505.8 444 63.5
FAN15G0409 Fragaria x ananassa HOM05D005141 ORTHO05D006250 6.5e-140 501.5 444 62.8
MD15G1116100 Malus domestica HOM05D005141 ORTHO05D006250 3.2e-139 499.2 455 63.5
FAN24G3348 Fragaria x ananassa HOM05D005141 ORTHO05D006250 1.2e-138 497.3 444 62.4
FAN20G1096 Fragaria x ananassa HOM05D005141 ORTHO05D006250 3.5e-138 495.7 444 62.6
Potri.018G033700 Populus trichocarpa HOM05D005141 ORTHO05D006250 6.3e-135 485.0 403 66.3
MD08G1137500 Malus domestica HOM05D005141 ORTHO05D006250 3.1e-134 482.6 452 62.6
Sabra18G0034600 Salix brachista HOM05D005141 ORTHO05D006250 2.6e-133 479.6 401 66.6
Dinv30204 Davidia involucrata HOM05D005141 ORTHO05D006250 1.1e-128 464.2 429 59.7
Manes.03G065500 Manihot esculenta HOM05D005141 ORTHO05D006250 2.2e-127 459.9 409 64.5
Manes.16G067800 Manihot esculenta HOM05D005141 ORTHO05D006250 2.8e-127 459.5 443 61.4
GSVIVG01035797001 Vitis vinifera HOM05D005141 ORTHO05D006250 1.5e-125 453.8 450 58.2
CANSAT25G3062 Cannabis sativa HOM05D005141 ORTHO05D006250 2.9e-124 449.5 448 60.5
Ciclev10008356m.g Citrus clementina HOM05D005141 ORTHO05D006250 7.2e-123 444.9 439 59.5
Sabra06G0193700 Salix brachista HOM05D005141 ORTHO05D006250 9.4e-123 444.5 412 62.4
TWI32G0021 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 3.6e-122 442.6 416 60.3
Thecc.09G145300 Theobroma cacao HOM05D005141 ORTHO05D006250 2.2e-119 433.3 450 57.6
Atru.chr7.2334 Acer truncatum HOM05D005141 ORTHO05D006250 5.9e-117 425.2 417 59.5
Eucgr.C01809 Eucalyptus grandis HOM05D005141 ORTHO05D006250 3.9e-113 412.5 409 56.7
VMungo1309G3073 Vigna mungo HOM05D005141 ORTHO05D006250 5.2e-113 412.1 399 56.4
TAR383G0458 Trochodendron aralioides HOM05D005141 ORTHO05D006250 8.8e-113 411.4 430 56.5
Phvul.009G097300 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 1.1e-112 411.0 399 56.4
Hma1.2p1_0175F.1_g077130 Hydrangea macrophylla HOM05D005141 ORTHO05D006250 1.5e-112 410.6 434 55.3
TAR626G1320 Trochodendron aralioides HOM05D005141 ORTHO05D006250 7.4e-112 408.3 430 56.0
Duzib187G0541 Durio zibethinus HOM05D005141 ORTHO05D006250 9.7e-112 407.9 448 54.9
Glyma.04G071400 Glycine max HOM05D005141 ORTHO05D006250 1.3e-111 407.5 424 53.3
TPR.G34685 Trifolium pratense HOM05D005141 ORTHO05D006250 6.3e-111 405.2 403 56.1
Ca_15703_v3 Cicer arietinum L. HOM05D005141 ORTHO05D006250 1.8e-110 403.7 408 55.9
Actinidia13429 Actinidia chinensis HOM05D005141 ORTHO05D006250 9.1e-110 401.4 403 57.3
Potri.006G247500 Populus trichocarpa HOM05D005141 ORTHO05D006250 9.1e-110 401.4 302 71.2
Glyma.06G072700 Glycine max HOM05D005141 ORTHO05D006250 1.2e-109 401.0 424 54.5
Lalb_Chr23g0268881 Lupinus albus HOM05D005141 ORTHO05D006250 7.2e-107 391.7 406 53.9
TWI34G0135 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 7.2e-107 391.7 357 61.3
Medtr3g107950 Medicago truncatula HOM05D005141 ORTHO05D006250 1.2e-106 391.0 398 56.0
Duzib150G1154 Durio zibethinus HOM05D005141 ORTHO05D006250 2.7e-106 389.8 486 51.0
Nn2g11855 Nelumbo nucifera HOM05D005141 ORTHO05D006250 6.1e-106 388.7 454 51.5
Duzib168G0094 Durio zibethinus HOM05D005141 ORTHO05D006250 8.0e-106 388.3 448 54.0
FvH4_2g30050 Fragaria vesca HOM05D005141 ORTHO05D006250 8.0e-106 388.3 338 63.3
Gorai.009G011200 Gossypium raimondii HOM05D005141 ORTHO05D006250 1.8e-105 387.1 447 52.6
Lj7A714G44 Lonicera japonica HOM05D005141 ORTHO05D006250 1.8e-105 387.1 352 60.5
PGSC0003DMG400026089 Solanum tuberosum HOM05D005141 ORTHO05D006250 4.4e-104 382.5 432 53.2
Lj1g0018494 Lotus japonicus HOM05D005141 ORTHO05D006250 9.7e-104 381.3 435 52.4
vmacro11124 Vaccinium macrocarpon HOM05D005141 ORTHO05D006250 1.1e-102 377.9 477 49.5
Solyc06g065650.3 Solanum lycopersicum HOM05D005141 ORTHO05D006250 2.0e-101 373.6 432 52.1
CAN.G199.28 Capsicum annuum HOM05D005141 ORTHO05D006250 1.0e-100 371.3 407 54.3
arahy.Tifrunner.gnm1.ann1.WUI646 Arachis hypogaea HOM05D005141 ORTHO05D006250 3.8e-100 369.4 384 54.2
Nitab4.5_0005873g0030 Nicotiana tabacum HOM05D005141 ORTHO05D006250 8.5e-100 368.2 440 49.8
Nitab4.5_0011669g0010 Nicotiana tabacum HOM05D005141 ORTHO05D006250 1.5e-99 367.5 439 49.4
Sopen06g024010 Solanum pennellii HOM05D005141 ORTHO05D006250 2.5e-99 366.7 432 51.2
TAR636G0300 Trochodendron aralioides HOM05D005141 ORTHO05D006250 1.8e-97 360.5 444 52.5
ClCG08G012940 Citrullus lanatus HOM05D005141 ORTHO05D006250 3.0e-97 359.8 453 53.0
Sed0000645 Sechium edule HOM05D005141 ORTHO05D006250 1.8e-94 350.5 444 50.2
Cpa.g.sc91.20 Carica papaya HOM05D005141 ORTHO05D006250 3.1e-94 349.7 317 60.9
Peaxi162Scf00545g00034 Petunia axillaris HOM05D005141 ORTHO05D006250 4.1e-94 349.4 454 49.1
Gohir.A05G010100 Gossypium hirsutum HOM05D005141 ORTHO05D006250 2.0e-93 347.1 446 49.1
arahy.Tifrunner.gnm1.ann1.29TRSQ Arachis hypogaea HOM05D005141 ORTHO05D006250 3.5e-93 346.3 411 49.1
Lalb_Chr08g0243831 Lupinus albus HOM05D005141 ORTHO05D006250 1.0e-92 344.7 416 49.5
DCAR_022871 Daucus carota HOM05D005141 ORTHO05D006250 4.7e-90 335.9 401 50.6
Gohir.D05G010800 Gossypium hirsutum HOM05D005141 ORTHO05D006250 4.0e-89 332.8 446 48.4
COL.COLO4_24046 Corchorus olitorius HOM05D005141 ORTHO05D006250 7.5e-88 328.6 289 63.0
Cc08_g08010 Coffea canephora HOM05D005141 ORTHO05D006250 2.2e-87 327.0 437 47.4
Rhsim02G0188600 Rhododendron simsii HOM05D005141 ORTHO05D006250 4.9e-87 325.9 649 36.8
MELO3C011217.2 Cucumis melo HOM05D005141 ORTHO05D006250 6.3e-87 325.5 479 47.8
Actinidia13280 Actinidia chinensis HOM05D005141 ORTHO05D006250 1.5e-83 314.3 290 60.7
PSO782G1260 Papaver somniferum HOM05D005141 ORTHO05D006250 2.1e-82 310.5 454 44.9
MBI04_g39529_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 1.2e-80 304.7 409 48.2
SalBow4G0713 Salvia bowleyana HOM05D005141 ORTHO05D006250 3.4e-80 303.1 377 49.1
ClCG05G017130 Citrullus lanatus HOM05D005141 ORTHO05D006250 2.2e-79 300.4 423 48.0
Nn8g39307 Nelumbo nucifera HOM05D005141 ORTHO05D006250 3.7e-79 299.7 307 55.0
Dinv11587 Davidia involucrata HOM05D005141 ORTHO05D006250 6.4e-79 298.9 262 61.8
MSTRG.25868 Avicennia marina HOM05D005141 ORTHO05D006250 3.2e-78 296.6 395 48.9
Sed0008448 Sechium edule HOM05D005141 ORTHO05D006250 5.4e-78 295.8 426 47.2
ECA233G0036 Erigeron canadensis HOM05D005141 ORTHO05D006250 2.7e-77 293.5 400 47.5
PGR031G2456 Punica granatum HOM05D005141 ORTHO05D006250 8.6e-76 288.5 445 44.3
MELO3C003675.2 Cucumis melo HOM05D005141 ORTHO05D006250 1.6e-74 284.3 428 46.0
CsaV3_3G046630 Cucumis sativus L. HOM05D005141 ORTHO05D006250 2.3e-73 280.4 400 47.8
Migut.A00282 Erythranthe guttata HOM05D005141 ORTHO05D006250 8.9e-73 278.5 400 46.8
MBI01_g37337_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 2.6e-72 276.9 307 52.4
HanXRQChr02g0050641 Helianthus annuus HOM05D005141 ORTHO05D006250 4.4e-72 276.2 371 48.2
Psat0s1782g0240 Pisum sativum HOM05D005141 ORTHO05D006250 5.8e-72 275.8 298 51.3
PSO063G0687 Papaver somniferum HOM05D005141 ORTHO05D006250 1.3e-71 274.6 453 42.4
Lsat_1_v5_gn_1_43100 Lactuca sativa HOM05D005141 ORTHO05D006250 4.6e-69 266.2 416 45.2
Phvul.001G055100 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 7.8e-69 265.4 348 46.6
Oeu014659.3 Olea europaea HOM05D005141 ORTHO05D006250 1.7e-68 264.2 384 45.6
EL10Ac2g02550 Beta vulgaris HOM05D005141 ORTHO05D006250 2.3e-68 263.8 359 48.5
Oeu032487.3 Olea europaea HOM05D005141 ORTHO05D006250 6.6e-68 262.3 310 52.6
ATR0083G007 Amborella trichopoda HOM05D005141 ORTHO05D006250 6.0e-61 239.2 322 45.7
THA.LOC104803820 Tarenaya hassleriana HOM05D005141 ORTHO05D006250 1.6e-58 231.1 413 43.1
AUR62024850 Chenopodium quinoa HOM05D005141 ORTHO05D006250 2.1e-58 230.7 333 44.7
HanXRQChr13g0402161 Helianthus annuus HOM05D005141 ORTHO05D006250 5.8e-56 222.6 330 44.2
Lsat_1_v5_gn_6_22941 Lactuca sativa HOM05D005141 ORTHO05D006250 1.7e-55 221.1 373 43.7
CsaV3_2G031660 Cucumis sativus L. HOM05D005141 ORTHO05D006250 3.9e-52 209.9 271 52.4
SGA_v2.0_scaffold27G11478 Striga asiatica HOM05D005141 ORTHO05D006250 1.9e-51 207.6 415 39.3
Sp7g30350 Schrenkiella parvula HOM05D005141 ORTHO05D006250 4.9e-47 193.0 435 35.6
BraA08t33764Z Brassica rapa HOM05D005141 ORTHO05D006250 7.1e-46 189.1 434 36.4
AL7G19190 Arabidopsis lyrata HOM05D005141 ORTHO05D006250 1.2e-45 188.3 389 38.0
AT4G32570 Arabidopsis thaliana HOM05D005141 ORTHO05D006250 2.7e-45 187.2 438 35.4
Carub.0007s0798 Capsella rubella HOM05D005141 ORTHO05D006250 2.7e-45 187.2 437 36.2
A08p18120 Brassica napus HOM05D005141 ORTHO05D006250 6.0e-45 186.0 434 36.2
C03p87260 Brassica napus HOM05D005141 ORTHO05D006250 7.9e-45 185.7 434 36.4
BcaC01g01013 Brassica carinata HOM05D005141 ORTHO05D006250 1.0e-44 185.3 432 36.1
BolC3t21027H Brassica oleracea HOM05D005141 ORTHO05D006250 1.0e-44 185.3 434 36.4
Thhalv10025562m.g Eutrema salsugineum HOM05D005141 ORTHO05D006250 2.3e-44 184.1 432 36.8
BcaB03g12752 Brassica carinata HOM05D005141 ORTHO05D006250 3.3e-43 180.3 423 36.4
C01p06380 Brassica napus HOM05D005141 ORTHO05D006250 2.8e-42 177.2 423 35.5
Aqoxy7G01897 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 6.2e-42 176.0 313 40.9
Glyma.17G205200 Glycine max HOM05D005141 ORTHO05D006250 2.4e-41 174.1 193 51.8
SHI18604 Sapria himalayana HOM05D005141 ORTHO05D006250 2.4e-41 174.1 289 40.5
BolC1t00634H Brassica oleracea HOM05D005141 ORTHO05D006250 2.0e-40 171.0 418 35.2
BraA01t00550Z Brassica rapa HOM05D005141 ORTHO05D006250 9.9e-40 168.7 430 34.2
A01p05810 Brassica napus HOM05D005141 ORTHO05D006250 5.5e-38 162.9 426 34.5
Aa31LG4G11720 Aethionema arabicum HOM05D005141 ORTHO05D006250 1.2e-37 161.8 436 33.9
BcaC09g52048 Brassica carinata HOM05D005141 ORTHO05D006250 2.1e-37 161.0 433 34.2
HPP92_009098 Vanilla planifolia HOM05D005141 ORTHO05D006250 2.3e-36 157.5 295 39.7
unitig_37.g12225 Utricularia gibba HOM05D005141 ORTHO05D006250 2.7e-29 134.0 333 33.3
CSS0000568 Camellia sinensis var. sinensis HOM05D005141 ORTHO05D006250 4.6e-29 133.3 124 59.7
SEGI_18535 Sequoiadendron giganteum HOM05D005141 ORTHO05D006250 1.8e-25 121.3 280 36.4
Ah.10g025860 Amaranthus hybridus HOM05D005141 ORTHO05D006250 5.9e-24 116.3 197 41.1
AagrBONN_evm.TU.Sc2ySwM_117.408 Anthoceros agrestis HOM05D005141 ORTHO05D006250 1.7e-23 114.8 373 31.6
unitig_46.g18533 Utricularia gibba HOM05D005141 ORTHO05D006250 1.1e-22 112.1 267 34.5
Aqoxy81s001 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 7.9e-21 105.9 132 47.0
Pp3c22_12420 Physcomitrium patens HOM05D005141 ORTHO05D006250 7.9e-21 105.9 302 32.5
Pp3c19_8700 Physcomitrium patens HOM05D005141 ORTHO05D006250 4.3e-19 100.1 372 29.6
Mapoly0079s0053 Marchantia polymorpha HOM05D005141 ORTHO05D006250 6.3e-18 96.3 332 30.7
C06p25010 Brassica napus HOM05D000698 ORTHO05D006250 8.2e-18 95.9 192 35.9
BcaC08g44885 Brassica carinata HOM05D005141 ORTHO05D006250 9.0e-17 92.4 175 36.0
SMO143G0273 Selaginella moellendorffii HOM05D005141 ORTHO05D006250 1.2e-16 92.0 184 36.4
Cpa.g.sc91.24 Carica papaya HOM05D005141 ORTHO05D006250 2.6e-16 90.9 103 50.5
A06p26660 Brassica napus HOM05D005141 ORTHO05D006250 1.0e-15 89.0 176 35.8
Haze_10527 Corylus avellana HOM05D005141 ORTHO05D006250 1.7e-15 88.2 79 58.2
C07p35200 Brassica napus HOM05D005141 ORTHO05D006250 8.2e-10 69.3 144 33.3
BolC7t44052H Brassica oleracea HOM05D005141 ORTHO05D006250 1.1e-09 68.9 144 32.6
BolC9t58511H Brassica oleracea HOM05D005141 ORTHO05D006250 1.2e-08 65.5 60 55.0
CAN.G843.41 Capsicum annuum HOM05D002346 ORTHO05D002452 7.2e-06 56.2 106 38.7


User provided reference genes

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