Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G009900 Carya illinoinensis HOM05D005830 ORTHO05D007212 8.9e-213 743.4 396 100.0
CiPaw.07G225200 Carya illinoinensis HOM05D005830 ORTHO05D007212 3.1e-149 532.3 392 73.7
QL02p021141 Quercus lobata HOM05D005830 ORTHO05D007212 5.3e-141 505.0 391 70.6
Cfa013122 Carpinus fangiana HOM05D005830 ORTHO05D007212 6.1e-129 464.9 386 66.6
Prupe.1G483400 Prunus persica HOM05D005830 ORTHO05D007212 2.8e-110 402.9 394 58.4
Gorai.009G059500 Gossypium raimondii HOM05D005830 ORTHO05D007212 6.3e-110 401.7 390 60.5
Gohir.D05G058400 Gossypium hirsutum HOM05D005830 ORTHO05D007212 8.3e-110 401.4 390 60.5
Ciclev10010445m.g Citrus clementina HOM05D005830 ORTHO05D007212 2.5e-106 389.8 392 56.9
Sabra06G0201100 Salix brachista HOM05D005830 ORTHO05D007212 1.8e-104 383.6 408 55.4
Thecc.09G021700 Theobroma cacao HOM05D005830 ORTHO05D007212 2.3e-104 383.3 401 56.1
TAR625G0228 Trochodendron aralioides HOM05D005830 ORTHO05D007212 2.3e-104 383.3 397 54.4
TAR636G3280 Trochodendron aralioides HOM05D005830 ORTHO05D007212 8.8e-104 381.3 397 53.7
COL.COLO4_18887 Corchorus olitorius HOM05D005830 ORTHO05D007212 1.2e-103 380.9 387 56.3
MD15G1128100 Malus domestica HOM05D005830 ORTHO05D007212 1.7e-102 377.1 395 54.7
Potri.006G256900 Populus trichocarpa HOM05D005830 ORTHO05D007212 1.4e-101 374.0 397 54.7
Nn2g12145 Nelumbo nucifera HOM05D005830 ORTHO05D007212 5.4e-101 372.1 397 52.6
RcHm_v2.0_Chr6g0297551 Rosa chinensis HOM05D005830 ORTHO05D007212 5.9e-100 368.6 394 53.6
Nn8g39584 Nelumbo nucifera HOM05D005830 ORTHO05D007212 4.2e-98 362.5 395 52.4
Dinv05006 Davidia involucrata HOM05D005830 ORTHO05D007212 4.0e-96 355.9 392 53.1
ClCG06G011670 Citrullus lanatus HOM05D005830 ORTHO05D007212 6.8e-96 355.1 405 50.1
Manes.16G124200 Manihot esculenta HOM05D002641 ORTHO05D001537 5.7e-95 352.1 389 53.2
Medtr3g106630 Medicago truncatula HOM05D005830 ORTHO05D007212 1.7e-94 350.5 385 52.5
Atru.chr7.1975 Acer truncatum HOM05D005830 ORTHO05D007212 2.2e-94 350.1 402 49.8
FvH4_2g28800 Fragaria vesca HOM05D005830 ORTHO05D007212 8.3e-94 348.2 390 50.0
FAN24G0474 Fragaria x ananassa HOM05D005830 ORTHO05D007212 3.1e-93 346.3 390 49.7
FAN27G1157 Fragaria x ananassa HOM05D005830 ORTHO05D007212 2.0e-92 343.6 390 49.0
CiPaw.03G250100 Carya illinoinensis HOM05D005830 ORTHO05D007212 2.7e-92 343.2 403 48.4
CiPaw.04G176400 Carya illinoinensis HOM05D005830 ORTHO05D007212 3.5e-92 342.8 402 48.3
FAN15G2262 Fragaria x ananassa HOM05D005830 ORTHO05D007212 5.9e-92 342.0 390 49.2
CsaV3_1G027980 Cucumis sativus L. HOM05D005830 ORTHO05D007212 1.0e-91 341.3 392 48.5
Lalb_Chr11g0063651 Lupinus albus HOM05D005830 ORTHO05D007212 2.3e-91 340.1 388 49.7
Dinv41459 Davidia involucrata HOM05D005830 ORTHO05D007212 5.0e-91 339.0 389 51.2
TPR.G3136 Trifolium pratense HOM05D005830 ORTHO05D007212 5.0e-91 339.0 386 51.3
GSVIVG01012831001 Vitis vinifera HOM05D005830 ORTHO05D007212 5.0e-91 339.0 386 50.5
FAN20G1042 Fragaria x ananassa HOM05D005830 ORTHO05D007212 6.6e-91 338.6 390 49.0
MELO3C010295.2 Cucumis melo HOM05D005830 ORTHO05D007212 1.1e-90 337.8 395 48.4
Eucgr.C02754 Eucalyptus grandis HOM05D005830 ORTHO05D007212 1.1e-90 337.8 388 49.2
Ciclev10008496m.g Citrus clementina HOM05D005830 ORTHO05D007212 1.5e-90 337.4 396 49.2
Manes.06G045500 Manihot esculenta HOM05D005830 ORTHO05D007212 1.5e-90 337.4 395 47.8
Dinv36464 Davidia involucrata HOM05D005830 ORTHO05D007212 1.9e-90 337.0 396 49.7
Potri.018G123400 Populus trichocarpa HOM05D005830 ORTHO05D007212 2.5e-90 336.7 392 50.3
Sed0009357 Sechium edule HOM05D005830 ORTHO05D007212 2.5e-90 336.7 395 47.8
Cpa.g.sc46.60 Carica papaya HOM05D005830 ORTHO05D007212 4.3e-90 335.9 399 47.4
Aqoxy7G03615 Aquilegia oxysepala HOM05D005830 ORTHO05D007212 5.6e-90 335.5 407 48.2
QL02p090253 Quercus lobata HOM05D005830 ORTHO05D007212 1.2e-89 334.3 408 46.3
Sabra06G0046300 Salix brachista HOM05D005830 ORTHO05D007212 1.2e-89 334.3 391 48.6
Gorai.009G015000 Gossypium raimondii HOM05D005830 ORTHO05D007212 1.6e-89 334.0 389 47.0
Hma1.2p1_0497F.1_g166530 Hydrangea macrophylla HOM05D005830 ORTHO05D007212 2.1e-89 333.6 409 47.9
Gohir.A05G013800 Gossypium hirsutum HOM05D005830 ORTHO05D007212 3.6e-89 332.8 389 47.6
Gohir.D05G014900 Gossypium hirsutum HOM05D005830 ORTHO05D007212 8.0e-89 331.6 390 47.4
Lj9A701G52 Lonicera japonica HOM05D005830 ORTHO05D007212 8.0e-89 331.6 390 49.2
Ah.09g224370 Amaranthus hybridus HOM05D005830 ORTHO05D007212 1.0e-88 331.3 395 48.4
Duzib150G0784 Durio zibethinus HOM05D005830 ORTHO05D007212 1.4e-88 330.9 387 47.3
Lj1g0023135 Lotus japonicus HOM05D005830 ORTHO05D007212 1.8e-88 330.5 393 49.9
Sabra18G0105100 Salix brachista HOM05D005830 ORTHO05D007212 3.1e-88 329.7 391 50.1
TWI63G1326 Tripterygium wilfordii HOM05D005830 ORTHO05D007212 5.2e-88 328.9 396 48.2
Prupe.7G250400 Prunus persica HOM05D005830 ORTHO05D007212 1.2e-87 327.8 409 48.4
CANSAT11G0221 Cannabis sativa HOM05D005830 ORTHO05D007212 2.0e-87 327.0 416 48.3
Cfa002293 Carpinus fangiana HOM05D005830 ORTHO05D007212 2.6e-87 326.6 403 47.4
Potri.006G063600 Populus trichocarpa HOM05D005830 ORTHO05D007212 2.6e-87 326.6 391 47.6
AUR62013287 Chenopodium quinoa HOM05D005830 ORTHO05D007212 3.4e-87 326.2 409 47.4
Eucgr.C00582 Eucalyptus grandis HOM05D005830 ORTHO05D007212 5.8e-87 325.5 390 49.5
vmacro06159 Vaccinium macrocarpon HOM05D005830 ORTHO05D007212 7.5e-87 325.1 403 47.9
EL10Ac8g18756 Beta vulgaris HOM05D005830 ORTHO05D007212 1.7e-86 323.9 404 48.5
Sc08g0006200 Simmondsia chinensis HOM05D005830 ORTHO05D007212 4.9e-86 322.4 396 48.2
MBI14_g38128_MAGBIO Magnolia biondii HOM05D005830 ORTHO05D007212 8.3e-86 321.6 406 46.6
FAN28G1643 Fragaria x ananassa HOM05D005830 ORTHO05D007212 1.9e-85 320.5 395 47.1
Haze_25480 Corylus avellana HOM05D005830 ORTHO05D007212 3.2e-85 319.7 403 46.2
FAN23G1789 Fragaria x ananassa HOM05D005830 ORTHO05D007212 3.2e-85 319.7 395 46.8
Psat5g029840 Pisum sativum HOM05D005830 ORTHO05D007212 4.1e-85 319.3 385 48.8
vmacro05164 Vaccinium macrocarpon HOM05D005830 ORTHO05D007212 5.4e-85 318.9 398 47.2
Glyma.04G065400 Glycine max HOM05D005830 ORTHO05D007212 9.2e-85 318.2 386 49.0
FvH4_1g02430 Fragaria vesca HOM05D005830 ORTHO05D007212 1.6e-84 317.4 395 46.3
FAN19G1317 Fragaria x ananassa HOM05D005830 ORTHO05D007212 1.6e-84 317.4 395 46.3
Ca_15753_v3 Cicer arietinum L. HOM05D005830 ORTHO05D007212 3.5e-84 316.2 389 48.1
VMungo1215G0722 Vigna mungo HOM05D005830 ORTHO05D007212 6.0e-84 315.5 394 47.5
MD02G1021100 Malus domestica HOM05D005830 ORTHO05D007212 1.7e-83 313.9 401 45.6
Rhsim07G0159800 Rhododendron simsii HOM05D005830 ORTHO05D007212 6.6e-83 312.0 393 47.1
MD15G1164200 Malus domestica HOM05D005830 ORTHO05D007212 1.1e-82 311.2 401 46.1
arahy.Tifrunner.gnm1.ann1.N1L3G9 Arachis hypogaea HOM05D005830 ORTHO05D007212 5.6e-82 308.9 393 45.0
Phvul.003G170800 Phaseolus vulgaris HOM05D005830 ORTHO05D007212 5.6e-82 308.9 394 47.0
Lsat_1_v5_gn_5_93541 Lactuca sativa HOM05D005830 ORTHO05D007212 7.3e-82 308.5 409 47.4
RcHm_v2.0_Chr2g0087391 Rosa chinensis HOM05D005830 ORTHO05D007212 1.2e-81 307.8 393 46.3
Thecc.09G135000 Theobroma cacao HOM05D005830 ORTHO05D007212 1.6e-81 307.4 389 45.8
Manes.14G117500 Manihot esculenta HOM05D005830 ORTHO05D007212 4.7e-81 305.8 390 45.4
Lalb_Chr13g0301421 Lupinus albus HOM05D005830 ORTHO05D007212 6.2e-81 305.4 397 45.3
Glyma.17G109300 Glycine max HOM05D005830 ORTHO05D007212 1.2e-79 301.2 394 47.7
Nitab4.5_0000704g0010 Nicotiana tabacum HOM05D005830 ORTHO05D007212 1.2e-79 301.2 405 45.4
Nitab4.5_0002267g0050 Nicotiana tabacum HOM05D005830 ORTHO05D007212 3.4e-79 299.7 407 44.7
Phvul.009G091500 Phaseolus vulgaris HOM05D005830 ORTHO05D007212 4.4e-79 299.3 391 46.5
COL.COLO4_15558 Corchorus olitorius HOM05D005830 ORTHO05D007212 7.5e-79 298.5 389 45.0
VMungo1309G0557 Vigna mungo HOM05D005830 ORTHO05D007212 2.9e-78 296.6 393 46.1
DCAR_020892 Daucus carota HOM05D005830 ORTHO05D007212 8.3e-78 295.0 390 45.4
Lj4g0000922 Lotus japonicus HOM05D005830 ORTHO05D007212 4.1e-77 292.7 383 47.5
TPR.G956 Trifolium pratense HOM05D005830 ORTHO05D007212 1.3e-75 287.7 383 45.2
Actinidia14593 Actinidia chinensis HOM05D000485 ORTHO05D000341 3.0e-75 286.6 352 45.5
Ca_21656_v3 Cicer arietinum L. HOM05D005830 ORTHO05D007212 3.0e-75 286.6 387 45.2
HanXRQChr12g0356861 Helianthus annuus HOM05D005830 ORTHO05D007212 2.8e-73 280.0 400 42.2
Peaxi162Scf00088g00106 Petunia axillaris HOM05D005830 ORTHO05D007212 8.1e-73 278.5 417 42.2
HanXRQChr10g0314411 Helianthus annuus HOM05D005830 ORTHO05D007212 5.2e-72 275.8 398 43.2
PGR142G1093 Punica granatum HOM05D005830 ORTHO05D007212 1.2e-71 274.6 386 44.3
Sc06g0000560 Simmondsia chinensis HOM05D005830 ORTHO05D007212 2.0e-71 273.9 404 41.3
Medtr4g115690 Medicago truncatula HOM05D005830 ORTHO05D007212 1.7e-70 270.8 341 46.3
Cc06_g07840 Coffea canephora HOM05D005830 ORTHO05D007212 2.4e-69 266.9 411 41.4
Psat4g036280 Pisum sativum HOM05D005830 ORTHO05D007212 3.5e-68 263.1 383 43.1
CAN.G1382.7 Capsicum annuum HOM05D005830 ORTHO05D007212 5.6e-66 255.8 455 38.5
Sopen07g003650 Solanum pennellii HOM05D005830 ORTHO05D007212 9.5e-66 255.0 354 44.4
Rhsim03G0252000 Rhododendron simsii HOM05D005830 ORTHO05D007212 1.6e-65 254.2 270 53.0
Solyc07g007660.1 Solanum lycopersicum HOM05D005830 ORTHO05D007212 4.7e-65 252.7 361 43.5
EL10Ac2g04187 Beta vulgaris HOM05D005830 ORTHO05D007212 1.4e-64 251.1 290 47.9
PGSC0003DMG400030680 Solanum tuberosum HOM05D005830 ORTHO05D007212 2.4e-64 250.4 365 43.6
MSTRG.10652 Avicennia marina HOM05D005830 ORTHO05D007212 2.6e-63 246.9 401 40.1
Ah.16g104630 Amaranthus hybridus HOM05D000524 ORTHO05D000381 9.9e-63 245.0 283 45.6
Aqoxy4G01850 Aquilegia oxysepala HOM05D005830 ORTHO05D007212 2.2e-62 243.8 298 46.3
Oeu052743.1 Olea europaea HOM05D005830 ORTHO05D007212 2.3e-59 233.8 393 37.7
AUR62011200 Chenopodium quinoa HOM05D005830 ORTHO05D007212 8.7e-59 231.9 325 43.7
ATR0800G042 Amborella trichopoda HOM05D005830 ORTHO05D007212 3.1e-56 223.4 393 38.9
Oeu056965.1 Olea europaea HOM05D005830 ORTHO05D007212 3.1e-56 223.4 358 37.2
ECA234G3193 Erigeron canadensis HOM05D005830 ORTHO05D007212 5.3e-56 222.6 282 44.3
Migut.K00413 Erythranthe guttata HOM05D005830 ORTHO05D007212 2.2e-54 217.2 394 39.3
unitig_0.g2712 Utricularia gibba HOM05D005830 ORTHO05D007212 6.6e-51 205.7 375 37.1
SalBow1G4219 Salvia bowleyana HOM05D005830 ORTHO05D007212 4.3e-50 203.0 341 38.1
AUR62012424 Chenopodium quinoa HOM05D005830 ORTHO05D007212 6.9e-48 195.7 402 34.1
HPP92_010549 Vanilla planifolia HOM05D005830 ORTHO05D007212 3.8e-46 189.9 301 40.2
arahy.Tifrunner.gnm1.ann1.TZG1XT Arachis hypogaea HOM05D000451 ORTHO05D000351 1.9e-45 187.6 314 35.0
Haze_21491 Corylus avellana HOM05D005830 ORTHO05D007212 3.3e-42 176.8 164 60.4
SEGI_15152 Sequoiadendron giganteum HOM05D005830 ORTHO05D007212 4.5e-39 166.4 472 31.1
Actinidia26367 Actinidia chinensis HOM05D005830 ORTHO05D007212 3.8e-38 163.3 399 34.6
AUR62031547 Chenopodium quinoa HOM05D005830 ORTHO05D007212 6.5e-38 162.5 249 39.8
FAN26G3009 Fragaria x ananassa HOM05D005830 ORTHO05D007212 1.4e-37 161.4 169 53.8
Glyma.16G087650 Glycine max HOM05D005830 ORTHO05D007212 4.8e-33 146.4 169 52.7
HPP92_027271 Vanilla planifolia HOM05D005830 ORTHO05D007212 1.1e-24 118.6 175 40.6
Medtr4g014150 Medicago truncatula HOM05D005830 ORTHO05D007212 1.4e-24 118.2 240 33.3
Glyma.06G066550 Glycine max HOM05D005830 ORTHO05D007212 3.1e-24 117.1 117 51.3
Lj7P437T13 Lonicera japonica HOM05D005830 ORTHO05D007212 2.2e-17 94.4 183 35.0
Glyma.01G070700 Glycine max HOM05D002723 ORTHO05D003240 3.6e-12 77.0 111 39.6
QL08p064688 Quercus lobata HOM05D005830 ORTHO05D007212 7.9e-12 75.9 144 34.7
VMungo1309G2190 Vigna mungo HOM05D005830 ORTHO05D026219 2.8e-09 67.4 92 41.3
CANSAT11G0844 Cannabis sativa HOM05D002008 ORTHO05D002054 3.1e-08 63.9 104 35.6


User provided reference genes

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