Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G008500 Carya illinoinensis HOM05D004744 ORTHO05D005655 0.0e+00 1238.0 645 100.0
QL02p020429 Quercus lobata HOM05D004744 ORTHO05D005655 8.8e-287 989.9 629 82.5
Haze_21464 Corylus avellana HOM05D004744 ORTHO05D005655 3.9e-274 948.0 659 76.9
Cfa013106 Carpinus fangiana HOM05D004744 ORTHO05D005655 8.3e-261 903.7 566 83.0
Atru.chr7.2497 Acer truncatum HOM05D004744 ORTHO05D005655 4.9e-245 851.3 626 71.4
GSVIVG01035922001 Vitis vinifera HOM05D004744 ORTHO05D005655 6.0e-243 844.3 624 69.2
Thecc.09G019800 Theobroma cacao HOM05D004744 ORTHO05D005655 3.1e-239 832.0 627 68.7
TAR625G1411 Trochodendron aralioides HOM05D004744 ORTHO05D005655 5.4e-236 821.2 625 69.0
MD15G1130500 Malus domestica HOM05D004744 ORTHO05D005655 1.6e-235 819.7 633 66.7
Ciclev10007726m.g Citrus clementina HOM05D004744 ORTHO05D005655 3.5e-235 818.5 631 67.4
Potri.018G022800 Populus trichocarpa HOM05D004744 ORTHO05D005655 5.6e-233 811.2 630 67.5
Sabra18G0025200 Salix brachista HOM05D004744 ORTHO05D005655 9.6e-233 810.4 630 67.8
Gohir.D06G101900 Gossypium hirsutum HOM05D004744 ORTHO05D005655 4.0e-231 805.1 629 67.4
Gorai.010G116900 Gossypium raimondii HOM05D004744 ORTHO05D005655 1.3e-229 800.0 634 67.0
FAN20G1207 Fragaria x ananassa HOM05D004744 ORTHO05D005655 2.4e-228 795.8 625 65.6
Ca_15759_v3 Cicer arietinum L. HOM05D004744 ORTHO05D005655 7.1e-228 794.3 631 65.8
Psat5g030800 Pisum sativum HOM05D004744 ORTHO05D005655 1.9e-225 786.2 631 66.1
FAN24G2392 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.6e-224 783.1 625 64.8
FAN27G1080 Fragaria x ananassa HOM05D004744 ORTHO05D005655 3.7e-224 781.9 625 64.5
FvH4_2g28330 Fragaria vesca HOM05D004744 ORTHO05D005655 1.1e-223 780.4 625 64.5
Actinidia13213 Actinidia chinensis HOM05D004744 ORTHO05D005655 1.4e-223 780.0 635 64.3
CANSAT01G0649 Cannabis sativa HOM05D004744 ORTHO05D005655 9.0e-223 777.3 632 64.7
Lj1g0018058 Lotus japonicus HOM05D004744 ORTHO05D005655 1.2e-222 776.9 631 63.4
CSS0007985 Camellia sinensis var. sinensis HOM05D004744 ORTHO05D005655 4.5e-222 775.0 629 66.1
Lalb_Chr08g0244261 Lupinus albus HOM05D004744 ORTHO05D005655 7.6e-222 774.2 627 64.4
RcHm_v2.0_Chr6g0297241 Rosa chinensis HOM05D004744 ORTHO05D005655 4.2e-220 768.5 626 64.4
Rhsim02G0205700 Rhododendron simsii HOM05D004744 ORTHO05D005655 3.5e-219 765.4 631 63.2
PGR142G3966 Punica granatum HOM05D004744 ORTHO05D005655 8.2e-216 754.2 636 61.5
Medtr3g106410 Medicago truncatula HOM05D004744 ORTHO05D005655 4.1e-215 751.9 631 62.9
TWI32G0623 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 5.3e-215 751.5 593 67.8
TPR.G3127 Trifolium pratense HOM05D004744 ORTHO05D005655 9.0e-215 750.7 672 60.7
MELO3C016990.2 Cucumis melo HOM05D004744 ORTHO05D005655 3.4e-214 748.8 632 62.8
THA.LOC104805576 Tarenaya hassleriana HOM05D004744 ORTHO05D005655 1.7e-213 746.5 631 62.0
arahy.Tifrunner.gnm1.ann1.8I84Z2 Arachis hypogaea HOM05D004744 ORTHO05D005655 5.0e-213 745.0 625 62.9
CsaV3_4G036900 Cucumis sativus L. HOM05D004744 ORTHO05D005655 4.2e-212 741.9 632 62.0
Aqoxy7G03541 Aquilegia oxysepala HOM05D004744 ORTHO05D005655 1.0e-210 737.3 627 62.8
arahy.Tifrunner.gnm1.ann1.LGG0U4 Arachis hypogaea HOM05D004744 ORTHO05D005655 9.7e-209 730.7 625 61.9
Sed0024238 Sechium edule HOM05D004744 ORTHO05D005655 1.3e-208 730.3 632 61.7
Glyma.02G173300 Glycine max HOM05D004744 ORTHO05D005655 1.6e-208 729.9 619 62.8
BcaC09g51994 Brassica carinata HOM05D004744 ORTHO05D005655 1.2e-206 723.8 627 60.8
BolC1t00685H Brassica oleracea HOM05D004744 ORTHO05D005655 1.2e-206 723.8 627 60.8
Carub.0007s0850 Capsella rubella HOM05D004744 ORTHO05D005655 4.5e-206 721.8 622 61.6
A01p06240 Brassica napus HOM05D004744 ORTHO05D005655 5.9e-206 721.5 625 60.2
BraA01t00591Z Brassica rapa HOM05D004744 ORTHO05D005655 5.9e-206 721.5 626 60.7
Sp7g29850 Schrenkiella parvula HOM05D004744 ORTHO05D005655 5.9e-206 721.5 624 61.1
C01p06880 Brassica napus HOM05D004744 ORTHO05D005655 7.7e-206 721.1 627 60.8
Glyma.02G001200 Glycine max HOM05D004744 ORTHO05D005655 1.3e-205 720.3 619 62.5
AL7G19840 Arabidopsis lyrata HOM05D004744 ORTHO05D005655 1.7e-205 719.9 623 61.6
Lsat_1_v5_gn_1_43821 Lactuca sativa HOM05D004744 ORTHO05D005655 1.7e-205 719.9 624 59.9
BcaNung03134 Brassica carinata HOM05D004744 ORTHO05D005655 2.9e-205 719.2 625 60.2
VMungo0720G0351 Vigna mungo HOM05D004744 ORTHO05D005655 5.0e-205 718.4 627 61.9
PSO063G6514 Papaver somniferum HOM05D004744 ORTHO05D005655 8.5e-205 717.6 632 58.7
Thhalv10024640m.g Eutrema salsugineum HOM05D004744 ORTHO05D005655 1.1e-204 717.2 640 59.1
Aa31LG2G18030 Aethionema arabicum HOM05D004744 ORTHO05D005655 7.2e-204 714.5 618 60.7
Phvul.007G279700 Phaseolus vulgaris HOM05D004744 ORTHO05D005655 7.9e-203 711.1 644 60.1
Sopen08g011940 Solanum pennellii HOM05D004744 ORTHO05D005655 3.3e-201 705.7 632 58.2
CARHR239950 Cardamine hirsuta HOM05D004744 ORTHO05D005655 7.4e-201 704.5 626 59.3
Lj8C731T12 Lonicera japonica HOM05D004744 ORTHO05D005655 4.8e-200 701.8 573 62.8
HanXRQChr01g0030631 Helianthus annuus HOM05D004744 ORTHO05D005655 1.1e-199 700.7 624 58.8
Manes.03G012200 Manihot esculenta HOM05D004744 ORTHO05D005655 3.1e-199 699.1 566 65.9
CAN.G326.4 Capsicum annuum HOM05D004744 ORTHO05D005655 2.0e-198 696.4 631 58.0
ClCG05G016620 Citrullus lanatus HOM05D004744 ORTHO05D005655 8.5e-197 691.0 631 60.4
AT4G32050 Arabidopsis thaliana HOM05D004744 ORTHO05D005655 2.5e-196 689.5 622 59.6
ECA248G1191 Erigeron canadensis HOM05D004744 ORTHO05D005655 1.4e-194 683.7 634 56.8
Nitab4.5_0002992g0040 Nicotiana tabacum HOM05D004744 ORTHO05D005655 8.8e-194 681.0 631 57.4
Cc08_g00230 Coffea canephora HOM05D004744 ORTHO05D005655 3.5e-190 669.1 628 57.2
Dinv18156 Davidia involucrata HOM05D004744 ORTHO05D005655 1.0e-189 667.5 518 66.6
Prupe.1G485900 Prunus persica HOM05D004744 ORTHO05D005655 2.9e-189 666.0 567 63.0
Migut.A00009 Erythranthe guttata HOM05D004744 ORTHO05D005655 1.5e-188 663.7 630 57.6
CDE05G1537 Ceratophyllum demersum HOM05D004744 ORTHO05D005655 5.5e-188 661.8 622 56.1
Lj1g0024423 Lotus japonicus HOM05D004744 ORTHO05D005655 3.6e-187 659.1 626 58.1
MSTRG.11596 Avicennia marina HOM05D004744 ORTHO05D005655 6.1e-187 658.3 629 57.1
Oeu033353.1 Olea europaea HOM05D004744 ORTHO05D005655 8.0e-187 657.9 667 55.0
Cpa.g.sc187.24 Carica papaya HOM05D004744 ORTHO05D005655 2.3e-186 656.4 536 65.7
EL10Ac3g06914 Beta vulgaris HOM05D004744 ORTHO05D005655 1.7e-184 650.2 625 54.6
vmacro11211 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 4.8e-184 648.7 511 66.1
vmacro11210 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 6.3e-184 648.3 511 66.1
Solyc08g041780.3 Solanum lycopersicum HOM05D004744 ORTHO05D005655 5.3e-183 645.2 632 54.7
AUR62015365 Chenopodium quinoa HOM05D004744 ORTHO05D005655 9.1e-183 644.4 589 57.6
AUR62012029 Chenopodium quinoa HOM05D004744 ORTHO05D005655 2.7e-182 642.9 589 58.1
Eucgr.C01702 Eucalyptus grandis HOM05D004744 ORTHO05D005655 2.3e-178 629.8 524 62.4
DCAR_000582 Daucus carota HOM05D004744 ORTHO05D005655 3.1e-175 619.4 620 53.9
Sc20g0001320 Simmondsia chinensis HOM05D004744 ORTHO05D005655 1.4e-170 604.0 512 61.7
ATR0767G197 Amborella trichopoda HOM05D004744 ORTHO05D005655 2.7e-166 589.7 624 51.4
SGA_v2.0_scaffold64G21986 Striga asiatica HOM05D004744 ORTHO05D005655 1.3e-165 587.4 662 50.9
Gohir.A06G099700 Gossypium hirsutum HOM05D004744 ORTHO05D005655 1.7e-165 587.0 462 67.3
Nn8g39704 Nelumbo nucifera HOM05D004744 ORTHO05D005655 3.3e-164 582.8 466 65.0
BcaC06g30946 Brassica carinata HOM05D004744 ORTHO05D005655 1.2e-163 580.9 626 51.4
COL.COLO4_18910 Corchorus olitorius HOM05D004744 ORTHO05D005655 5.2e-162 575.5 445 68.3
Nitab4.5_0005958g0020 Nicotiana tabacum HOM05D004744 ORTHO05D005655 5.2e-162 575.5 558 55.0
Os02g0798700 Oryza sativa ssp. japonica HOM05D004744 ORTHO05D005655 2.6e-161 573.2 627 49.4
CAN.G435.2 Capsicum annuum HOM05D004744 ORTHO05D005655 3.7e-160 569.3 547 56.3
HPP92_003269 Vanilla planifolia HOM05D004744 ORTHO05D005655 2.0e-158 563.5 624 49.7
RcHm_v2.0_Chr2g0139901 Rosa chinensis HOM05D004744 ORTHO05D005655 1.5e-156 557.4 607 54.0
TPR.G21279 Trifolium pratense HOM05D004744 ORTHO05D005655 2.1e-155 553.5 639 51.6
Hund06750 Selenicereus undatus HOM05D004744 ORTHO05D005655 1.5e-145 520.8 655 45.0
TPR.G21273 Trifolium pratense HOM05D004744 ORTHO05D005655 2.4e-143 513.5 588 52.9
Eucgr.C01625 Eucalyptus grandis HOM05D004744 ORTHO05D005655 4.6e-134 482.6 391 62.4
Zm00001eb257970 Zea mays HOM05D004744 ORTHO05D005655 6.7e-117 425.6 477 49.3
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 1.8e-109 401.0 367 57.8
Pp3c12_9830 Physcomitrium patens HOM05D004744 ORTHO05D005655 1.8e-93 347.8 630 32.2
TPR.G18367 Trifolium pratense HOM05D004744 ORTHO05D005655 2.3e-93 347.4 385 54.0
Mapoly0033s0067 Marchantia polymorpha HOM05D004744 ORTHO05D005655 4.8e-91 339.7 647 33.4
unitig_0.g2772 Utricularia gibba HOM05D004744 ORTHO05D005655 2.6e-89 334.0 629 36.9
C07p37210 Brassica napus HOM05D004744 ORTHO05D005655 9.1e-82 308.9 510 40.0
BolC7t44231H Brassica oleracea HOM05D004744 ORTHO05D005655 9.1e-82 308.9 510 40.0
BcaC06g33762 Brassica carinata HOM05D004744 ORTHO05D005655 2.2e-80 304.3 379 47.8
SMO134G0198 Selaginella moellendorffii HOM05D004744 ORTHO05D005655 8.5e-80 302.4 630 31.4
AagrBONN_evm.TU.Sc2ySwM_117.465 Anthoceros agrestis HOM05D004744 ORTHO05D005655 1.4e-74 285.0 511 33.3
vmacro12150 Vaccinium macrocarpon HOM05D000172 ORTHO05D000781 2.0e-73 281.2 373 46.9
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 1.0e-69 268.9 263 53.6
A06p40720 Brassica napus HOM05D004744 ORTHO05D005655 1.4e-58 231.9 255 50.2
BraA06t26993Z Brassica rapa HOM05D004744 ORTHO05D005655 1.4e-58 231.9 255 50.2
Ah.14g079380 Amaranthus hybridus HOM05D004744 ORTHO05D005655 1.9e-47 194.9 179 56.4
CBR_g34813 Chara braunii HOM05D004744 ORTHO05D005655 3.0e-45 187.6 397 31.0
BcaC06g30944 Brassica carinata HOM05D004744 ORTHO05D005655 6.6e-40 169.9 163 52.1
DCAR_000580 Daucus carota HOM05D004744 ORTHO05D005655 3.1e-37 161.0 167 49.1
DCAR_000575 Daucus carota HOM05D004744 ORTHO05D005655 3.4e-36 157.5 143 58.7
GSVIVG01011258001 Vitis vinifera HOM05D004744 ORTHO05D005655 9.8e-36 156.0 130 64.6
PGSC0003DMG400015627 Solanum tuberosum HOM05D004744 ORTHO05D005655 2.2e-35 154.8 150 52.0
BolC8t47068H Brassica oleracea HOM05D004744 ORTHO05D005655 3.5e-33 147.5 163 50.9
FAN09G4690 Fragaria x ananassa HOM05D004744 ORTHO05D005655 6.0e-33 146.7 369 36.3
SEGI_40333 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 1.5e-31 142.1 142 54.2
Ah.14g079390 Amaranthus hybridus HOM05D004744 ORTHO05D005655 9.5e-31 139.4 222 40.5
C08p49950 Brassica napus HOM05D004744 ORTHO05D005655 9.5e-31 139.4 163 49.1
FAN14G1088 Fragaria x ananassa HOM05D004744 ORTHO05D005655 3.4e-28 131.0 403 30.8
Pp3c4_13414 Physcomitrium patens HOM05D004744 ORTHO05D005655 4.6e-25 120.6 329 27.4
FvH4_6g32120 Fragaria vesca HOM05D004744 ORTHO05D005655 3.0e-24 117.9 272 38.2
COL.COLO4_18909 Corchorus olitorius HOM05D004744 ORTHO05D005655 9.5e-23 112.8 80 72.5
BcaC07g41939 Brassica carinata HOM05D004744 ORTHO05D005655 1.2e-22 112.5 138 49.3
DCAR_000578 Daucus carota HOM05D004744 ORTHO05D005655 1.6e-22 112.1 119 49.6
Cpa.g.sc187.23 Carica papaya HOM05D004744 ORTHO05D005655 2.1e-22 111.7 126 50.0
Eucgr.L02780 Eucalyptus grandis HOM05D004744 ORTHO05D005655 2.2e-19 101.7 65 80.0
SHI18506 Sapria himalayana HOM05D004744 ORTHO05D005655 1.6e-17 95.5 59 76.3
SEGI_39231 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 7.3e-15 86.7 153 36.6
SHI18507 Sapria himalayana HOM05D004744 ORTHO05D005655 6.2e-14 83.6 88 56.8
TWI63G1552 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 5.8e-12 77.0 93 51.6
Dinv18155 Davidia involucrata HOM05D004744 ORTHO05D005655 1.3e-11 75.9 41 85.4
Cre07.g323650 Chlamydomonas reinhardtii HOM05D004744 ORTHO05D005655 3.8e-11 74.3 149 31.5
unitig_748.g7861 Utricularia gibba HOM05D004744 ORTHO05D005655 6.4e-11 73.6 74 55.4
SEGI_08303 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 8.4e-11 73.2 69 52.2
CsaV3_4G016180 Cucumis sativus L. HOM05D004744 ORTHO05D005655 2.5e-07 61.6 44 65.9
unitig_60.g25872 Utricularia gibba HOM05D004744 ORTHO05D005655 4.3e-07 60.8 48 64.6
C08p02720 Brassica napus HOM05D004744 ORTHO05D005655 5.6e-07 60.5 77 42.9
MELO3C032098.2 Cucumis melo HOM05D004744 ORTHO05D005655 7.3e-07 60.1 42 61.9
Lsat_1_v5_gn_7_37280 Lactuca sativa HOM05D002279 ORTHO05D017063 2.1e-06 58.5 65 46.2
TWI34G1186 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 3.6e-06 57.8 36 66.7


User provided reference genes

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