Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G008300 Carya illinoinensis HOM05D004589 ORTHO05D005848 0.0e+00 2233.0 1133 100.0
Haze_21457 Corylus avellana HOM05D004589 ORTHO05D005848 0.0e+00 1994.2 1131 88.8
Cfa013100 Carpinus fangiana HOM05D004589 ORTHO05D005848 0.0e+00 1991.9 1131 88.8
QL02p020149 Quercus lobata HOM05D004589 ORTHO05D005848 0.0e+00 1934.5 1222 81.2
Dinv03411 Davidia involucrata HOM05D004589 ORTHO05D005848 0.0e+00 1883.6 1132 84.2
TWI63G0229 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 0.0e+00 1875.1 1129 83.7
MD15G1131100 Malus domestica HOM05D004589 ORTHO05D005848 0.0e+00 1873.6 1131 83.6
Thecc.09G019500 Theobroma cacao HOM05D004589 ORTHO05D005848 0.0e+00 1866.3 1132 84.0
Duzib150G1268 Durio zibethinus HOM05D004589 ORTHO05D005848 0.0e+00 1860.5 1132 83.7
RcHm_v2.0_Chr6g0297201 Rosa chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1852.4 1131 82.5
FvH4_2g28290 Fragaria vesca HOM05D004589 ORTHO05D005848 0.0e+00 1844.7 1131 81.9
FAN24G2656 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1835.5 1147 80.8
CSS0038938 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 0.0e+00 1835.1 1133 81.9
Lj5g0022357 Lotus japonicus HOM05D004589 ORTHO05D005848 0.0e+00 1834.3 1130 81.6
COL.COLO4_18916 Corchorus olitorius HOM05D004589 ORTHO05D005848 0.0e+00 1833.2 1132 82.7
FAN15G2875 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1831.2 1147 80.9
Ciclev10007276m.g Citrus clementina HOM05D004589 ORTHO05D005848 0.0e+00 1827.8 1132 82.9
FAN27G1181 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1827.4 1147 80.6
MELO3C016987.2 Cucumis melo HOM05D004589 ORTHO05D005848 0.0e+00 1826.6 1128 80.9
ClCG05G016580 Citrullus lanatus HOM05D004589 ORTHO05D005848 0.0e+00 1824.3 1136 80.7
Glyma.17G215700 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1823.5 1131 81.2
VMungo0647G1846 Vigna mungo HOM05D004589 ORTHO05D005848 0.0e+00 1822.4 1128 80.9
Glyma.14G112200 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1820.8 1130 81.2
Phvul.001G047300 Phaseolus vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1817.0 1128 80.9
Lalb_Chr11g0075481 Lupinus albus HOM05D004589 ORTHO05D005848 0.0e+00 1814.7 1131 80.4
Actinidia23085 Actinidia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1807.3 1135 81.2
Sed0004204 Sechium edule HOM05D004589 ORTHO05D005848 0.0e+00 1803.5 1128 79.6
Ca_13043_v3 Cicer arietinum L. HOM05D004589 ORTHO05D005848 0.0e+00 1792.3 1131 80.0
Atru.chr7.2502 Acer truncatum HOM05D004589 ORTHO05D005848 0.0e+00 1790.0 1099 83.1
Potri.018G022500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1788.9 1128 80.1
Gorai.001G035900 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1788.5 1132 81.1
Gohir.A07G030400 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1786.9 1132 80.8
PGR044G0530 Punica granatum HOM05D004589 ORTHO05D005848 0.0e+00 1779.2 1128 80.2
Nn2g12251 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1773.8 1133 79.4
Eucgr.C02726 Eucalyptus grandis HOM05D004589 ORTHO05D005848 0.0e+00 1773.4 1132 79.2
Psat6g028520 Pisum sativum HOM05D004589 ORTHO05D005848 0.0e+00 1767.3 1130 79.0
arahy.Tifrunner.gnm1.ann1.PKKG09 Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1766.1 1130 78.9
Medtr1g012980 Medicago truncatula HOM05D004589 ORTHO05D005848 0.0e+00 1766.1 1130 79.0
CANSAT11G1771 Cannabis sativa HOM05D004589 ORTHO05D005848 0.0e+00 1764.6 1128 79.8
arahy.Tifrunner.gnm1.ann1.JQP3NY Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1763.4 1130 78.9
Oeu056766.2 Olea europaea HOM05D004589 ORTHO05D005848 0.0e+00 1757.7 1132 79.0
Potri.006G259500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1757.3 1128 79.4
Lj8A732G29 Lonicera japonica HOM05D004589 ORTHO05D005848 0.0e+00 1753.8 1214 74.7
Sp6g32450 Schrenkiella parvula HOM05D004589 ORTHO05D005848 0.0e+00 1748.8 1130 79.1
A10p26640 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1746.9 1130 79.1
THA.LOC104799036 Tarenaya hassleriana HOM05D004589 ORTHO05D005848 0.0e+00 1746.9 1136 79.0
BraA10t44722Z Brassica rapa HOM05D004589 ORTHO05D005848 0.0e+00 1745.7 1130 79.0
C09p65810 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1743.4 1130 78.9
Carub.0006s0955 Capsella rubella HOM05D004589 ORTHO05D005848 0.0e+00 1743.4 1131 79.0
Aqoxy7G03529 Aquilegia oxysepala HOM05D004589 ORTHO05D005848 0.0e+00 1743.0 1133 78.6
Cc08_g00190 Coffea canephora HOM05D004589 ORTHO05D005848 0.0e+00 1742.6 1134 77.9
BolC9t59402H Brassica oleracea HOM05D004589 ORTHO05D005848 0.0e+00 1742.2 1130 78.8
RhsimUnG0052600 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1735.3 1216 74.8
RhsimUnG0165300 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1735.3 1216 74.8
AL6G21660 Arabidopsis lyrata HOM05D004589 ORTHO05D005848 0.0e+00 1734.9 1131 78.6
AT5G11040 Arabidopsis thaliana HOM05D004589 ORTHO05D005848 0.0e+00 1734.9 1130 78.4
Thhalv10012483m.g Eutrema salsugineum HOM05D004589 ORTHO05D005848 0.0e+00 1733.4 1130 78.4
MSTRG.1735 Avicennia marina HOM05D004589 ORTHO05D005848 0.0e+00 1723.8 1133 76.8
Aa31LG3G16090 Aethionema arabicum HOM05D004589 ORTHO05D005848 0.0e+00 1723.4 1129 77.1
Nitab4.5_0002503g0050 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1717.6 1147 76.8
PSO210G3160 Papaver somniferum HOM05D004589 ORTHO05D005848 0.0e+00 1713.0 1138 76.3
Sc23g0006530 Simmondsia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1711.4 1131 77.1
Nn8g39722 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1705.3 1133 76.6
Migut.E01823 Erythranthe guttata HOM05D004589 ORTHO05D005848 0.0e+00 1701.8 1132 76.2
CAN.G199.72 Capsicum annuum HOM05D004589 ORTHO05D005848 0.0e+00 1698.3 1129 77.1
EL10Ac2g04152 Beta vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1697.2 1128 76.2
Solyc06g065840.3 Solanum lycopersicum HOM05D004589 ORTHO05D005848 0.0e+00 1696.4 1129 76.5
Peaxi162Scf00430g00220 Petunia axillaris HOM05D004589 ORTHO05D005848 0.0e+00 1693.3 1129 77.1
Sopen06g024330 Solanum pennellii HOM05D004589 ORTHO05D005848 0.0e+00 1690.6 1129 76.4
AUR62012448 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1682.9 1128 76.0
Manes.16G126200 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1681.8 1131 76.1
ECA246G2532 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1681.4 1132 75.3
AUR62031571 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1680.2 1128 76.4
Ah.16g104820 Amaranthus hybridus HOM05D004589 ORTHO05D005848 0.0e+00 1679.1 1128 75.8
vmacro22576 Vaccinium macrocarpon HOM05D004589 ORTHO05D005848 0.0e+00 1674.4 1273 70.7
Gohir.D06G102200 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1672.9 1132 75.5
SGA_v2.0_scaffold85G26586 Striga asiatica HOM05D004589 ORTHO05D005848 0.0e+00 1667.5 1129 75.5
Nitab4.5_0003811g0060 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1666.7 1162 74.5
HanXRQChr16g0511131 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1659.0 1128 75.0
Manes.03G011700 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1643.6 1013 81.8
BcaC04g19264 Brassica carinata HOM05D004589 ORTHO05D005848 0.0e+00 1634.4 1135 75.2
ATR0629G049 Amborella trichopoda HOM05D004589 ORTHO05D005848 0.0e+00 1628.2 1141 72.0
DCAR_021911 Daucus carota HOM05D004589 ORTHO05D005848 0.0e+00 1602.8 1157 72.0
GSVIVG01035919001 Vitis vinifera HOM05D004589 ORTHO05D005848 0.0e+00 1602.8 1128 74.0
Lsat_1_v5_gn_6_115440 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1583.2 1130 71.9
TAR383G0245 Trochodendron aralioides HOM05D004589 ORTHO05D005848 0.0e+00 1565.8 1023 77.9
CDE05G2463 Ceratophyllum demersum HOM05D004589 ORTHO05D005848 0.0e+00 1527.7 1141 68.5
CsaV3_4G036860 Cucumis sativus L. HOM05D004589 ORTHO05D005848 0.0e+00 1518.8 963 80.1
Gorai.010G117200 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1490.7 974 77.6
Lsat_1_v5_gn_1_43861 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1483.8 1116 69.8
Gohir.A06G100000 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1483.0 974 77.4
Zm00001eb078140 Zea mays HOM05D004589 ORTHO05D005848 0.0e+00 1473.8 1129 66.2
Prupe.1G486400 Prunus persica HOM05D004589 ORTHO05D005848 0.0e+00 1465.7 910 81.4
FAN20G1713 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1464.1 910 81.1
HanXRQChr01g0030641 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1452.2 1132 65.9
Os04g0502200 Oryza sativa ssp. japonica HOM05D004589 ORTHO05D005848 0.0e+00 1438.7 1141 65.4
CARHR202250 Cardamine hirsuta HOM05D004589 ORTHO05D005848 0.0e+00 1384.0 924 77.1
Gohir.D07G034300 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1369.8 828 83.2
Hma1.2p1_0167F.1_g073640 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 0.0e+00 1327.4 828 81.5
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1325.8 1001 68.7
Hund04463 Selenicereus undatus HOM05D004589 ORTHO05D005848 0.0e+00 1262.7 864 75.0
unitig_32.g11112 Utricularia gibba HOM05D004589 ORTHO05D005848 0.0e+00 1250.0 868 71.5
AagrBONN_evm.TU.Sc2ySwM_368.2742 Anthoceros agrestis HOM05D004589 ORTHO05D005848 0.0e+00 1229.9 1150 56.3
HPP92_020312 Vanilla planifolia HOM05D004589 ORTHO05D005848 0.0e+00 1175.6 904 66.7
Mapoly0001s0490 Marchantia polymorpha HOM05D004589 ORTHO05D005848 0.0e+00 1153.7 1157 53.3
Pp3c19_10170 Physcomitrium patens HOM05D004589 ORTHO05D005848 4.1e-303 1045.0 1156 50.6
Pp3c22_21520 Physcomitrium patens HOM05D004589 ORTHO05D005848 3.2e-300 1035.4 1159 50.3
SMO364G0672 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 3.4e-257 892.5 1131 43.8
CBR_g36903 Chara braunii HOM05D004589 ORTHO05D005848 2.4e-255 886.3 1288 41.7
Actinidia14103 Actinidia chinensis HOM05D004589 ORTHO05D005848 1.7e-248 863.6 519 83.4
SMO199G0047 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 4.9e-240 835.5 1176 43.3
SMO361G0208 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 8.7e-229 798.1 1148 42.9
TPR.G40835 Trifolium pratense HOM05D004589 ORTHO05D005848 1.5e-201 707.6 424 84.2
arahy.Tifrunner.gnm1.ann1.X695T9 Arachis hypogaea HOM05D004589 ORTHO05D005848 1.3e-163 581.6 488 64.5
Cpa.g.sc187.29 Carica papaya HOM05D004589 ORTHO05D005848 1.9e-151 541.2 306 85.9
TPR.G38939 Trifolium pratense HOM05D004589 ORTHO05D005848 4.0e-149 533.5 324 80.6
TPR.G38909 Trifolium pratense HOM05D004589 ORTHO05D005848 8.9e-133 479.2 360 69.2
HPP92_024788 Vanilla planifolia HOM05D004589 ORTHO05D005848 2.1e-129 468.0 679 43.3
SEGI_04045 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 3.6e-126 457.2 323 69.3
arahy.Tifrunner.gnm1.ann1.3DY4JU Arachis hypogaea HOM05D004589 ORTHO05D005848 3.3e-119 434.1 329 70.8
Hma1.2p1_0167F.1_g073630 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 6.2e-118 429.9 292 75.7
Gohir.D07G034250 Gossypium hirsutum HOM05D004589 ORTHO05D005848 6.2e-102 376.7 278 73.4
SEGI_21363 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 5.3e-101 373.6 361 54.8
AagrBONN_evm.TU.Sc2ySwM_368.2737 Anthoceros agrestis HOM05D004589 ORTHO05D005848 4.8e-86 323.9 290 54.8
HPP92_024789 Vanilla planifolia HOM05D004589 ORTHO05D005848 1.4e-85 322.4 256 66.4
Medtr7g069440 Medicago truncatula HOM05D004589 ORTHO05D005848 1.2e-68 266.2 320 50.0
unitig_32.g11113 Utricularia gibba HOM05D004589 ORTHO05D005848 1.0e-67 263.1 240 60.0
Zm00001eb426010 Zea mays HOM05D004589 ORTHO05D005848 8.8e-64 250.0 270 51.9
MD08G1153900 Malus domestica HOM05D004589 ORTHO05D005848 4.5e-52 211.1 116 84.5
CSS0039966 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 1.1e-50 206.5 209 60.3
Zm00001eb426000 Zea mays HOM05D004589 ORTHO05D005848 1.2e-49 203.0 159 67.9
Cre07.g316100 Chlamydomonas reinhardtii HOM05D004589 ORTHO05D005848 4.8e-46 191.0 729 26.1
HPP92_024790 Vanilla planifolia HOM05D004589 ORTHO05D005848 2.4e-45 188.7 138 64.5
HPP92_020311 Vanilla planifolia HOM05D004589 ORTHO05D005848 2.9e-43 181.8 194 53.6
SMO361G0808 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 9.8e-39 166.8 268 41.0
Nn2g16054 Nelumbo nucifera HOM05D004589 ORTHO05D005848 8.0e-33 147.1 83 88.0
TAR383G0934 Trochodendron aralioides HOM05D004589 ORTHO05D005848 2.3e-27 129.0 90 73.3
arahy.Tifrunner.gnm1.ann1.6TA6W9 Arachis hypogaea HOM05D004589 ORTHO05D005848 4.7e-25 121.3 91 67.0
TWI34G0107 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 5.2e-24 117.9 89 73.0
arahy.Tifrunner.gnm1.ann1.6PY749 Arachis hypogaea HOM05D004589 ORTHO05D005848 1.3e-22 113.2 89 64.0
Sp3g28070 Schrenkiella parvula HOM05D004589 ORTHO05D005848 5.6e-18 97.8 62 77.4
Cpa.g.sc187.28 Carica papaya HOM05D004589 ORTHO05D005848 1.1e-13 83.6 44 86.4
RcHm_v2.0_Chr2g0096161 Rosa chinensis HOM05D004589 ORTHO05D005848 3.2e-13 82.0 52 71.2
SMO164G0067 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.6e-12 79.7 235 31.5
arahy.Tifrunner.gnm1.ann1.E2IMN8 Arachis hypogaea HOM05D004589 ORTHO05D005848 7.8e-12 77.4 52 65.4
Sabra19G0134500 Salix brachista HOM05D001978 ORTHO05D000005 5.1e-11 74.7 70 57.1
C02p04820 Brassica napus HOM05D004589 ORTHO05D023960 1.9e-10 72.8 74 62.2
BolC2t06439H Brassica oleracea HOM05D004589 ORTHO05D023960 1.9e-10 72.8 74 62.2
A02p00800 Brassica napus HOM05D004589 ORTHO05D023960 5.6e-10 71.2 60 66.7
Cc00_g21220 Coffea canephora HOM05D004589 ORTHO05D005848 2.1e-09 69.3 55 60.0
Nn4g24965 Nelumbo nucifera HOM05D004589 ORTHO05D005848 2.8e-09 68.9 54 70.4
GSVIVG01037947001 Vitis vinifera HOM05D004589 ORTHO05D005848 4.7e-09 68.2 38 81.6
SMO364G0797 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 8.4e-06 57.4 122 35.2


User provided reference genes

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