Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G004800 Carya illinoinensis HOM05D004383 ORTHO05D005050 1.0e-99 366.7 181 100.0
GSVIVG01035992001 Vitis vinifera HOM05D004383 ORTHO05D005050 2.5e-93 345.5 179 95.0
CiPaw.07G231900 Carya illinoinensis HOM05D004383 ORTHO05D005050 3.2e-93 345.1 181 93.9
CSS0047262 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 2.1e-92 342.4 181 91.2
Gohir.A05G061400 Gossypium hirsutum HOM05D004383 ORTHO05D005050 4.6e-92 341.3 179 92.2
Gorai.009G064600 Gossypium raimondii HOM05D004383 ORTHO05D005050 4.6e-92 341.3 179 92.2
Manes.03G007300 Manihot esculenta HOM05D004383 ORTHO05D005050 7.9e-92 340.5 181 91.2
COL.COLO4_18979 Corchorus olitorius HOM05D002641 ORTHO05D005050 1.0e-91 340.1 181 90.6
RcHm_v2.0_Chr6g0299241 Rosa chinensis HOM05D004383 ORTHO05D005050 1.0e-91 340.1 181 92.8
FvH4_3g24420 Fragaria vesca HOM05D004383 ORTHO05D005050 1.3e-91 339.7 179 92.7
Manes.16G131700 Manihot esculenta HOM05D004383 ORTHO05D005050 1.8e-91 339.3 181 90.6
PGR044G2662 Punica granatum HOM05D004383 ORTHO05D005050 1.8e-91 339.3 181 91.7
FAN21G1236 Fragaria x ananassa HOM05D004383 ORTHO05D005050 3.9e-91 338.2 179 92.2
Thecc.09G012700 Theobroma cacao HOM05D004383 ORTHO05D005050 3.9e-91 338.2 179 92.2
Duzib187G0841 Durio zibethinus HOM05D004383 ORTHO05D005050 5.1e-91 337.8 181 91.2
FAN16G3501 Fragaria x ananassa HOM05D004383 ORTHO05D005050 5.1e-91 337.8 179 91.6
Gohir.D05G063900 Gossypium hirsutum HOM05D004383 ORTHO05D005050 1.1e-90 336.7 179 91.1
Gohir.D06G105600 Gossypium hirsutum HOM05D004383 ORTHO05D005050 1.1e-90 336.7 179 91.6
MELO3C016948.2 Cucumis melo HOM05D004383 ORTHO05D005050 1.9e-90 335.9 181 90.6
Atru.chr7.2584 Acer truncatum HOM05D004383 ORTHO05D005050 3.3e-90 335.1 179 91.6
Hma1.2p1_0355F.1_g133920 Hydrangea macrophylla HOM05D004383 ORTHO05D005050 4.3e-90 334.7 181 91.7
CANSAT64G0435 Cannabis sativa HOM05D004383 ORTHO05D005050 7.4e-90 334.0 181 89.5
Gorai.010G120200 Gossypium raimondii HOM05D004383 ORTHO05D005050 7.4e-90 334.0 179 90.5
Lj7A737G42 Lonicera japonica HOM05D004383 ORTHO05D005050 9.7e-90 333.6 179 92.2
Sed0012000 Sechium edule HOM05D004383 ORTHO05D005050 9.7e-90 333.6 181 89.0
CsaV3_4G036420 Cucumis sativus L. HOM05D004383 ORTHO05D005050 1.3e-89 333.2 181 90.1
Duzib168G1681 Durio zibethinus HOM05D004383 ORTHO05D005050 1.3e-89 333.2 181 90.1
Prupe.1G396200 Prunus persica HOM05D004383 ORTHO05D005050 1.3e-89 333.2 179 91.1
TWI32G1179 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 1.3e-89 333.2 181 90.1
Eucgr.C04036 Eucalyptus grandis HOM05D004383 ORTHO05D005050 2.8e-89 332.0 181 90.1
TWI34G1410 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 4.8e-89 331.3 181 89.5
arahy.Tifrunner.gnm1.ann1.S5PPFL Arachis hypogaea HOM05D004383 ORTHO05D005050 1.4e-88 329.7 182 90.1
MD15G1042900 Malus domestica HOM05D004383 ORTHO05D005050 1.4e-88 329.7 179 89.9
ClCG05G016150 Citrullus lanatus HOM05D004383 ORTHO05D005050 1.8e-88 329.3 181 89.0
QL02p018464 Quercus lobata HOM05D004383 ORTHO05D005050 3.1e-88 328.6 168 95.8
Potri.006G266300 Populus trichocarpa HOM05D004383 ORTHO05D005050 6.9e-88 327.4 179 87.2
Potri.018G016800 Populus trichocarpa HOM05D004383 ORTHO05D005050 6.9e-88 327.4 181 86.2
Sed0009310 Sechium edule HOM05D004383 ORTHO05D005050 9.0e-88 327.0 181 89.0
Actinidia14139 Actinidia chinensis HOM05D004383 ORTHO05D005050 1.2e-87 326.6 181 89.0
arahy.Tifrunner.gnm1.ann1.W5C21C Arachis hypogaea HOM05D004383 ORTHO05D005050 2.0e-87 325.9 178 90.4
Peaxi162Scf00045g01943 Petunia axillaris HOM05D004383 ORTHO05D005050 2.6e-87 325.5 176 89.8
CSS0026414 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 5.9e-87 324.3 181 87.8
ECA238G1890 Erigeron canadensis HOM05D004383 ORTHO05D005050 1.0e-86 323.6 181 86.7
AUR62024788 Chenopodium quinoa HOM05D004383 ORTHO05D005050 1.7e-86 322.8 179 84.4
AUR62032433 Chenopodium quinoa HOM05D004383 ORTHO05D005050 2.2e-86 322.4 179 84.4
Cc00_g24580 Coffea canephora HOM05D004383 ORTHO05D005050 5.0e-86 321.2 179 85.5
Sopen08g002600 Solanum pennellii HOM05D004383 ORTHO05D005050 6.5e-86 320.9 176 89.2
PGSC0003DMG400026285 Solanum tuberosum HOM05D004383 ORTHO05D005050 6.5e-86 320.9 176 89.2
Rhsim07G0166500 Rhododendron simsii HOM05D004383 ORTHO05D005050 8.5e-86 320.5 203 80.8
Hund25610 Selenicereus undatus HOM05D004383 ORTHO05D005050 8.5e-86 320.5 182 84.6
Ciclev10009603m.g Citrus clementina HOM05D004383 ORTHO05D005050 1.1e-85 320.1 167 94.0
TAR625G0171 Trochodendron aralioides HOM05D004383 ORTHO05D005050 1.1e-85 320.1 181 86.2
TAR625G1552 Trochodendron aralioides HOM05D004383 ORTHO05D005050 1.1e-85 320.1 181 86.2
Phvul.001G042400 Phaseolus vulgaris HOM05D004383 ORTHO05D005050 1.9e-85 319.3 178 89.9
FAN05G0819 Fragaria x ananassa HOM05D004383 ORTHO05D005050 3.2e-85 318.5 172 91.3
Lsat_1_v5_gn_8_16540 Lactuca sativa HOM05D004383 ORTHO05D005050 3.2e-85 318.5 175 88.6
Solyc08g006650.3 Solanum lycopersicum HOM05D004383 ORTHO05D005050 5.5e-85 317.8 176 88.6
CAN.G285.20 Capsicum annuum HOM05D004383 ORTHO05D005050 7.2e-85 317.4 176 87.5
FvH4_6g27370 Fragaria vesca HOM05D004383 ORTHO05D005050 7.2e-85 317.4 172 90.7
Nn1g03128 Nelumbo nucifera HOM05D004383 ORTHO05D005050 7.2e-85 317.4 181 87.8
EL10Ac2g02480 Beta vulgaris HOM05D004383 ORTHO05D005050 9.4e-85 317.0 176 85.8
Lalb_Chr24g0401921 Lupinus albus HOM05D004383 ORTHO05D005050 9.4e-85 317.0 179 87.2
Nitab4.5_0000264g0060 Nicotiana tabacum HOM05D004383 ORTHO05D005050 1.2e-84 316.6 176 88.6
Ah.12g060630 Amaranthus hybridus HOM05D004383 ORTHO05D005050 2.1e-84 315.8 175 86.3
Nn3g19885 Nelumbo nucifera HOM05D004383 ORTHO05D005050 2.1e-84 315.8 181 84.5
VMungo0647G1739 Vigna mungo HOM05D004383 ORTHO05D005050 2.1e-84 315.8 178 88.8
CSS0025027 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 6.1e-84 314.3 170 91.2
Haze_21384 Corylus avellana HOM05D004383 ORTHO05D005050 7.9e-84 313.9 200 81.0
Glyma.17G222100 Glycine max HOM05D004383 ORTHO05D005050 1.8e-83 312.8 178 88.2
FAN14G2933 Fragaria x ananassa HOM05D004383 ORTHO05D005050 8.8e-83 310.5 173 89.0
Medtr1g013660 Medicago truncatula HOM05D004383 ORTHO05D005050 1.1e-82 310.1 182 85.7
Cpa.g.sc148.37 Carica papaya HOM05D004383 ORTHO05D005050 1.5e-82 309.7 177 86.4
ECA233G1452 Erigeron canadensis HOM05D004383 ORTHO05D005050 1.5e-82 309.7 173 85.5
Glyma.14G103800 Glycine max HOM05D004383 ORTHO05D005050 2.0e-82 309.3 178 87.1
THA.LOC104824960 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 2.0e-82 309.3 177 83.6
TPR.G38877 Trifolium pratense HOM05D004383 ORTHO05D005050 2.5e-82 308.9 178 87.1
Migut.E01443 Erythranthe guttata HOM05D004383 ORTHO05D005050 3.3e-82 308.5 181 83.4
HanXRQChr12g0370101 Helianthus annuus HOM05D004383 ORTHO05D005050 3.3e-82 308.5 173 85.0
THA.LOC104799028 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 4.3e-82 308.1 177 83.6
Aa31LG3G16320 Aethionema arabicum HOM05D004383 ORTHO05D005050 5.7e-82 307.8 177 83.1
MSTRG.13961 Avicennia marina HOM05D004383 ORTHO05D005050 5.7e-82 307.8 181 81.8
Thhalv10014802m.g Eutrema salsugineum HOM05D004383 ORTHO05D005050 1.7e-81 306.2 176 84.1
Psat6g025120 Pisum sativum HOM05D004383 ORTHO05D005050 2.2e-81 305.8 178 86.5
Carub.0006s0928 Capsella rubella HOM05D004383 ORTHO05D005050 2.8e-81 305.4 176 84.1
Sabra18G0020200 Salix brachista HOM05D004383 ORTHO05D005050 2.8e-81 305.4 170 85.9
SGA_v2.0_scaffold4G02162 Striga asiatica HOM05D004383 ORTHO05D005050 2.8e-81 305.4 179 83.2
Lj6g0009294 Lotus japonicus HOM05D004383 ORTHO05D005050 3.7e-81 305.1 183 83.6
Sp6g32680 Schrenkiella parvula HOM05D004383 ORTHO05D005050 4.8e-81 304.7 176 83.0
BcaB01g06278 Brassica carinata HOM05D004383 ORTHO05D005050 6.3e-81 304.3 176 83.0
Sabra06G0208900 Salix brachista HOM05D004383 ORTHO05D005050 8.2e-81 303.9 169 86.4
BcaB01g05499 Brassica carinata HOM05D004383 ORTHO05D005050 1.1e-80 303.5 176 83.0
CARHR202520 Cardamine hirsuta HOM05D004383 ORTHO05D005050 1.1e-80 303.5 176 83.5
Ca_13075_v3 Cicer arietinum L. HOM05D004383 ORTHO05D005050 1.1e-80 303.5 178 85.4
vmacro05117 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 1.1e-80 303.5 168 89.3
AL6G21360 Arabidopsis lyrata HOM05D004383 ORTHO05D005050 1.4e-80 303.1 176 83.5
AT5G10780 Arabidopsis thaliana HOM05D004383 ORTHO05D005050 1.4e-80 303.1 176 83.5
BcaB05g21506 Brassica carinata HOM05D004383 ORTHO05D005050 1.8e-80 302.8 176 81.8
Oeu010290.1 Olea europaea HOM05D004383 ORTHO05D005050 4.1e-80 301.6 181 77.9
SGA_v2.0_scaffold169G38599 Striga asiatica HOM05D004383 ORTHO05D005050 4.1e-80 301.6 179 81.6
BcaC03g13332 Brassica carinata HOM05D004383 ORTHO05D005050 2.0e-79 299.3 177 81.9
A02p00660 Brassica napus HOM05D004383 ORTHO05D005050 2.0e-79 299.3 177 81.9
C02p04660 Brassica napus HOM05D004383 ORTHO05D005050 2.0e-79 299.3 177 81.9
A03p04760 Brassica napus HOM05D004383 ORTHO05D005050 2.6e-79 298.9 177 81.9
PSO017G0706 Papaver somniferum HOM05D004383 ORTHO05D005050 3.4e-79 298.5 182 83.5
PSO170G1218 Papaver somniferum HOM05D004383 ORTHO05D005050 3.4e-79 298.5 182 83.5
HanXRQChr07g0201211 Helianthus annuus HOM05D004383 ORTHO05D005050 4.5e-79 298.1 176 83.5
Nitab4.5_0001362g0040 Nicotiana tabacum HOM05D004383 ORTHO05D005050 4.5e-79 298.1 169 86.4
BraA02t05050Z Brassica rapa HOM05D004383 ORTHO05D005050 5.9e-79 297.7 177 81.4
DCAR_003054 Daucus carota HOM05D004383 ORTHO05D005050 1.0e-78 297.0 168 88.1
BraA03t09816Z Brassica rapa HOM05D004383 ORTHO05D005050 2.2e-78 295.8 177 81.4
FAN02G2967 Fragaria x ananassa HOM05D004383 ORTHO05D005050 2.2e-78 295.8 161 91.3
MD08G1052600 Malus domestica HOM05D004383 ORTHO05D005050 3.8e-78 295.0 177 84.7
C03p05470 Brassica napus HOM05D004383 ORTHO05D005050 1.1e-77 293.5 169 83.4
CDE05G2494 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 7.2e-77 290.8 181 81.2
Oeu021906.1 Olea europaea HOM05D004383 ORTHO05D005050 1.2e-76 290.0 168 82.7
Migut.A00383 Erythranthe guttata HOM05D004383 ORTHO05D005050 3.6e-76 288.5 179 79.3
SalBow8G1520 Salvia bowleyana HOM05D004383 ORTHO05D005050 3.6e-76 288.5 168 82.1
CDE02G0236 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 1.0e-75 287.0 181 79.6
MBI14_g31383_MAGBIO Magnolia biondii HOM05D004383 ORTHO05D005050 1.8e-75 286.2 180 80.0
BolC3t13057H Brassica oleracea HOM05D004383 ORTHO05D005050 2.3e-75 285.8 168 82.1
ATR0580G398 Amborella trichopoda HOM05D004383 ORTHO05D005050 5.1e-75 284.6 178 80.3
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 6.7e-75 284.3 169 81.7
vmacro11269 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 7.4e-74 280.8 258 60.9
Dinv10290 Davidia involucrata HOM05D004383 ORTHO05D005050 1.1e-72 276.9 150 92.0
unitig_32.g11121 Utricularia gibba HOM05D004383 ORTHO05D005050 1.1e-72 276.9 168 81.5
SEGI_36915 Sequoiadendron giganteum HOM05D004383 ORTHO05D005050 4.5e-71 271.6 178 74.7
Os03g0360500 Oryza sativa ssp. japonica HOM05D004383 ORTHO05D005050 2.2e-70 269.2 182 73.1
Zm00001eb394360 Zea mays HOM05D004383 ORTHO05D005050 9.4e-69 263.8 179 71.5
Sc23g0006160 Simmondsia chinensis HOM05D004383 ORTHO05D005050 5.7e-66 254.6 148 85.8
Actinidia10531 Actinidia chinensis HOM05D004383 ORTHO05D005050 2.4e-64 249.2 179 73.7
SMO367G0045 Selaginella moellendorffii HOM05D004383 ORTHO05D005050 9.1e-64 247.3 176 69.3
Mapoly0039s0015 Marchantia polymorpha HOM05D004383 ORTHO05D005050 5.0e-62 241.5 170 67.1
AagrBONN_evm.TU.Sc2ySwM_368.2778 Anthoceros agrestis HOM05D004383 ORTHO05D005050 2.5e-61 239.2 175 65.7
Pp3c18_15950 Physcomitrium patens HOM05D004383 ORTHO05D005050 4.7e-60 235.0 171 66.1
BcaNung06638 Brassica carinata HOM05D004383 ORTHO05D005050 2.2e-49 199.5 134 74.6
CBR_g29297 Chara braunii HOM05D004383 ORTHO05D005050 6.3e-49 198.0 172 56.4
Aqoxy7G03322 Aquilegia oxysepala HOM05D004383 ORTHO05D005050 2.4e-48 196.1 172 62.8
Dinv01903 Davidia involucrata HOM05D004383 ORTHO05D005050 4.2e-45 185.3 100 93.0
TAR383G0062 Trochodendron aralioides HOM05D004383 ORTHO05D005050 1.0e-38 164.1 102 81.4
HPP92_021944 Vanilla planifolia HOM05D004383 ORTHO05D005050 1.6e-36 156.8 116 70.7
HPP92_021971 Vanilla planifolia HOM05D004383 ORTHO05D005050 9.2e-32 141.0 80 86.2
MCO09G762 Micromonas commoda HOM05D004383 ORTHO05D005050 1.7e-30 136.7 176 42.0
PRCOL_00000905 Prasinoderma coloniale HOM05D004383 ORTHO05D005050 5.0e-30 135.2 174 40.8
TAR383G0705 Trochodendron aralioides HOM05D004383 ORTHO05D005050 2.1e-28 129.8 69 88.4
arahy.Tifrunner.gnm1.ann1.76P32W Arachis hypogaea HOM05D004383 ORTHO05D005050 4.7e-28 128.6 75 86.7
arahy.Tifrunner.gnm1.ann1.90HH72 Arachis hypogaea HOM05D004383 ORTHO05D005050 4.7e-28 128.6 75 86.7
DCAR_031730 Daucus carota HOM05D004383 ORTHO05D005050 4.6e-23 112.1 100 61.0
CSS0013447 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 6.0e-23 111.7 57 91.2
CSS0012906 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.9e-21 106.7 54 92.6
Medtr8g027900 Medicago truncatula HOM05D000337 ORTHO05D000297 2.1e-20 103.2 51 96.1
DCAR_030622 Daucus carota HOM05D001936 ORTHO05D005050 3.1e-19 99.4 83 66.3
Oeu048647.1 Olea europaea HOM05D004383 ORTHO05D005050 8.9e-19 97.8 62 74.2
Cre07.g351700 Chlamydomonas reinhardtii HOM05D004383 ORTHO05D005050 1.3e-17 94.0 165 35.2
Cfa024789 Carpinus fangiana HOM05D004383 ORTHO05D005050 6.4e-17 91.7 165 34.5
Lalb_Chr15g0080471 Lupinus albus HOM05D004383 ORTHO05D005050 1.1e-13 80.9 90 50.0
Atru.chr7.2585 Acer truncatum HOM05D004383 ORTHO05D005050 3.1e-11 72.8 45 75.6
arahy.Tifrunner.gnm1.ann1.54XXT5 Arachis hypogaea HOM05D004383 ORTHO05D005050 3.1e-11 72.8 37 91.9
Lalb_Chr15g0078021 Lupinus albus HOM05D004383 ORTHO05D005050 3.1e-11 72.8 88 48.9
Atru.chr7.2578 Acer truncatum HOM05D004610 ORTHO05D001148 4.0e-11 72.4 51 70.6
Lalb_Chr10g0093521 Lupinus albus HOM05D004383 ORTHO05D005050 4.4e-10 68.9 38 89.5
MD10G1133700 Malus domestica HOM05D004383 ORTHO05D005050 2.2e-09 66.6 55 63.6
RcHm_v2.0_Chr3g0494951 Rosa chinensis HOM05D004383 ORTHO05D005050 4.9e-09 65.5 42 76.2
Lalb_Chr01g0013281 Lupinus albus HOM05D004383 ORTHO05D005050 6.4e-09 65.1 50 66.0
C03p33160 Brassica napus HOM05D004383 ORTHO05D005050 9.3e-08 61.2 38 73.7
BolC3t15641H Brassica oleracea HOM05D004383 ORTHO05D005050 9.3e-08 61.2 38 73.7
MD03G1162600 Malus domestica HOM05D004383 ORTHO05D005050 1.2e-07 60.8 43 69.8
MD10G1176800 Malus domestica HOM05D004383 ORTHO05D005050 1.2e-07 60.8 33 84.8


User provided reference genes

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