Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G001700 Carya illinoinensis HOM05D002766 ORTHO05D002809 6.9e-98 360.9 220 100.0
Cfa012925 Carpinus fangiana HOM05D002766 ORTHO05D002809 1.5e-57 226.9 220 58.6
Prupe.2G275300 Prunus persica HOM05D002766 ORTHO05D002809 6.1e-38 161.8 171 53.8
Hma1.2p1_0432F.1_g151920 Hydrangea macrophylla HOM05D002766 ORTHO05D002809 2.6e-36 156.4 185 53.5
TWI39G0974 Tripterygium wilfordii HOM05D002766 ORTHO05D002809 2.6e-36 156.4 188 52.7
QL02p025713 Quercus lobata HOM05D002766 ORTHO05D002809 4.8e-35 152.1 226 44.2
Haze_21283 Corylus avellana HOM05D002766 ORTHO05D002809 1.4e-34 150.6 159 55.3
Duzib084G0704 Durio zibethinus HOM05D002766 ORTHO05D002809 7.7e-33 144.8 181 51.9
Manes.14G037400 Manihot esculenta HOM05D002766 ORTHO05D002809 1.3e-32 144.1 190 48.9
GSVIVG01014040001 Vitis vinifera HOM05D002766 ORTHO05D002809 6.5e-32 141.7 182 50.0
MD01G1181500 Malus domestica HOM05D002766 ORTHO05D002809 4.2e-31 139.0 171 53.2
MD01G1181400 Malus domestica HOM05D002766 ORTHO05D002809 7.2e-31 138.3 171 53.2
TWI23G0718 Tripterygium wilfordii HOM05D002766 ORTHO05D002809 2.1e-30 136.7 166 50.6
MD07G1251500 Malus domestica HOM05D002766 ORTHO05D002809 3.6e-30 136.0 170 51.8
RcHm_v2.0_Chr1g0374081 Rosa chinensis HOM05D002766 ORTHO05D002809 8.0e-30 134.8 171 52.6
vmacro22809 Vaccinium macrocarpon HOM05D002766 ORTHO05D002809 8.0e-30 134.8 171 48.5
Thecc.03G152900 Theobroma cacao HOM05D002766 ORTHO05D002809 1.0e-29 134.4 171 50.9
Sabra01G0097400 Salix brachista HOM05D002766 ORTHO05D002809 1.4e-29 134.0 191 47.6
PGR042G3253 Punica granatum HOM05D002766 ORTHO05D002809 1.8e-29 133.7 163 48.5
Rhsim03G0165400 Rhododendron simsii HOM05D002766 ORTHO05D002809 1.8e-29 133.7 172 48.3
TWI14G0760 Tripterygium wilfordii HOM05D002766 ORTHO05D002809 4.0e-29 132.5 230 42.6
Ciclev10005283m.g Citrus clementina HOM05D002766 ORTHO05D002809 6.8e-29 131.7 170 50.0
Eucgr.A02904 Eucalyptus grandis HOM05D002766 ORTHO05D002809 1.2e-28 131.0 186 48.9
Potri.001G126300 Populus trichocarpa HOM05D002766 ORTHO05D002809 4.4e-28 129.0 187 48.1
Sabra03G0074200 Salix brachista HOM05D002766 ORTHO05D002809 9.8e-28 127.9 173 47.4
TAR375G0286 Trochodendron aralioides HOM05D002766 ORTHO05D002809 9.8e-28 127.9 118 57.6
Atru.chr1.819 Acer truncatum HOM05D002766 ORTHO05D002809 6.3e-27 125.2 176 43.8
FAN06G1573 Fragaria x ananassa HOM05D002766 ORTHO05D002809 8.3e-27 124.8 174 50.6
FAN06G5039 Fragaria x ananassa HOM05D002766 ORTHO05D002809 8.3e-27 124.8 174 50.6
FAN01G2484 Fragaria x ananassa HOM05D002766 ORTHO05D002809 4.1e-26 122.5 170 49.4
FAN10G0777 Fragaria x ananassa HOM05D002766 ORTHO05D002809 5.4e-26 122.1 174 50.6
Potri.003G107400 Populus trichocarpa HOM05D002766 ORTHO05D002809 7.0e-26 121.7 185 44.9
FvH4_7g27250 Fragaria vesca HOM05D002766 ORTHO05D002809 9.2e-26 121.3 174 49.4
Duzib205G1127 Durio zibethinus HOM05D002766 ORTHO05D002809 1.6e-25 120.6 192 44.3
Peaxi162Scf00271g00833 Petunia axillaris HOM05D002766 ORTHO05D002809 1.6e-25 120.6 167 44.3
Oeu017784.1 Olea europaea HOM05D002766 ORTHO05D002809 3.5e-25 119.4 163 49.1
CANSAT56G2422 Cannabis sativa HOM05D002766 ORTHO05D002809 5.9e-25 118.6 161 47.2
Nitab4.5_0001358g0090 Nicotiana tabacum HOM05D002766 ORTHO05D002809 3.8e-24 115.9 184 38.0
FAN03G2268 Fragaria x ananassa HOM05D002766 ORTHO05D002809 5.0e-24 115.5 174 48.3
MSTRG.133 Avicennia marina HOM05D002766 ORTHO05D002809 1.1e-23 114.4 204 42.6
Sopen03g024140 Solanum pennellii HOM05D002766 ORTHO05D002809 1.2e-22 110.9 168 38.7
Nn1g00944 Nelumbo nucifera HOM05D002766 ORTHO05D002809 2.1e-22 110.2 181 40.9
THA.LOC104808277 Tarenaya hassleriana HOM05D002766 ORTHO05D002809 2.1e-22 110.2 171 43.9
Manes.06G133000 Manihot esculenta HOM05D002766 ORTHO05D002809 2.8e-22 109.8 171 46.8
PGSC0003DMG400018857 Solanum tuberosum HOM05D002766 ORTHO05D002809 3.6e-22 109.4 185 37.8
BcaB03g12457 Brassica carinata HOM05D002766 ORTHO05D002809 4.0e-21 105.9 174 41.4
HanXRQChr05g0142591 Helianthus annuus HOM05D002766 ORTHO05D002809 5.2e-21 105.5 169 37.3
CAN.G48.48 Capsicum annuum HOM05D002766 ORTHO05D002809 1.2e-20 104.4 167 39.5
Nitab4.5_0001267g0160 Nicotiana tabacum HOM05D002766 ORTHO05D002809 1.5e-20 104.0 187 36.9
Sc25g0000010 Simmondsia chinensis HOM05D002766 ORTHO05D002809 1.5e-20 104.0 186 40.3
Sc26g0000010 Simmondsia chinensis HOM05D002766 ORTHO05D002809 1.5e-20 104.0 186 40.3
Gohir.D11G043100 Gossypium hirsutum HOM05D002766 ORTHO05D002809 4.4e-20 102.4 232 37.5
Gorai.007G046400 Gossypium raimondii HOM05D002766 ORTHO05D002809 4.4e-20 102.4 232 37.5
THA.LOC104825057 Tarenaya hassleriana HOM05D002766 ORTHO05D002809 4.4e-20 102.4 186 39.2
Actinidia01048 Actinidia chinensis HOM05D002766 ORTHO05D002809 9.8e-20 101.3 159 44.7
Thhalv10025619m.g Eutrema salsugineum HOM05D002766 ORTHO05D002809 9.8e-20 101.3 185 40.5
DCAR_020182 Daucus carota HOM05D002766 ORTHO05D002809 2.2e-19 100.1 187 40.6
DCAR_018118 Daucus carota HOM05D002766 ORTHO05D002809 2.9e-19 99.8 184 38.6
Aa31LG7G10410 Aethionema arabicum HOM05D002766 ORTHO05D002809 3.7e-19 99.4 178 41.6
Rhsim09G0190500 Rhododendron simsii HOM05D002766 ORTHO05D002809 4.9e-19 99.0 183 39.3
A08p21270 Brassica napus HOM05D004509 ORTHO05D005568 6.4e-19 98.6 110 50.0
BraA08t34076Z Brassica rapa HOM05D004509 ORTHO05D005568 1.4e-18 97.4 170 40.6
Solyc03g093340.4 Solanum lycopersicum HOM05D002766 ORTHO05D002809 1.4e-18 97.4 169 36.7
Dinv06576 Davidia involucrata HOM05D002766 ORTHO05D002809 1.8e-18 97.1 108 53.7
Lj1A977T69 Lonicera japonica HOM05D002766 ORTHO05D002809 1.8e-18 97.1 169 43.2
BcaC07g38177 Brassica carinata HOM05D002766 ORTHO05D002809 2.4e-18 96.7 176 38.1
BolC8t48599H Brassica oleracea HOM05D002766 ORTHO05D002809 2.4e-18 96.7 176 38.1
Gohir.A11G039800 Gossypium hirsutum HOM05D002766 ORTHO05D002809 2.4e-18 96.7 232 36.2
BcaC09g50801 Brassica carinata HOM05D002766 ORTHO05D002809 4.1e-18 95.9 186 38.7
C01p20580 Brassica napus HOM05D002766 ORTHO05D002809 4.1e-18 95.9 186 38.7
AT4G25170 Arabidopsis thaliana HOM05D002766 ORTHO05D002809 7.0e-18 95.1 179 38.5
Migut.F00490 Erythranthe guttata HOM05D002766 ORTHO05D002809 1.2e-17 94.4 116 48.3
AL7G27980 Arabidopsis lyrata HOM05D002766 ORTHO05D002809 1.6e-17 94.0 151 42.4
A01p16430 Brassica napus HOM05D002766 ORTHO05D002809 1.6e-17 94.0 186 38.2
BcaNung04006 Brassica carinata HOM05D002766 ORTHO05D002809 2.0e-17 93.6 189 39.2
RcHm_v2.0_Chr5g0058361 Rosa chinensis HOM05D002766 ORTHO05D002809 2.0e-17 93.6 127 47.2
Carub.0007s1586 Capsella rubella HOM05D002766 ORTHO05D002809 4.6e-17 92.4 192 38.0
Eucgr.K00169 Eucalyptus grandis HOM05D002766 ORTHO05D002809 5.9e-17 92.0 147 43.5
Lsat_1_v5_gn_8_10400 Lactuca sativa HOM05D002766 ORTHO05D002809 1.0e-16 91.3 158 42.4
Cc02_g04440 Coffea canephora HOM05D002766 ORTHO05D002809 5.0e-16 89.0 142 39.4
Haze_21282 Corylus avellana HOM05D002766 ORTHO05D002809 5.0e-16 89.0 72 63.9
ClCG01G001130 Citrullus lanatus HOM05D002766 ORTHO05D002809 1.5e-15 87.4 157 41.4
MELO3C005821.2 Cucumis melo HOM05D002766 ORTHO05D002809 3.3e-15 86.3 161 40.4
vmacro09914 Vaccinium macrocarpon HOM05D002766 ORTHO05D002809 4.3e-15 85.9 229 34.1
Aqoxy5G03825 Aquilegia oxysepala HOM05D002766 ORTHO05D002809 5.6e-15 85.5 129 41.9
Lsat_1_v5_gn_2_128541 Lactuca sativa HOM05D002766 ORTHO05D002809 1.6e-14 84.0 161 39.8
Cpa.g.sc13.285 Carica papaya HOM05D002766 ORTHO05D002809 2.1e-14 83.6 99 52.5
CsaV3_5G001260 Cucumis sativus L. HOM05D002766 ORTHO05D002809 2.8e-14 83.2 176 35.8
ECA233G0134 Erigeron canadensis HOM05D002766 ORTHO05D002809 2.8e-14 83.2 195 36.4
MBI04_g09526_MAGBIO Magnolia biondii HOM05D002766 ORTHO05D002809 6.2e-14 82.0 168 35.7
BolC1t01988H Brassica oleracea HOM05D002766 ORTHO05D002809 8.0e-14 81.6 209 34.0
BraA01t01598Z Brassica rapa HOM05D002766 ORTHO05D002809 1.0e-13 81.3 208 34.1
SGA_v2.0_scaffold2G01226 Striga asiatica HOM05D002766 ORTHO05D002809 1.0e-13 81.3 116 40.5
PSO782G1550 Papaver somniferum HOM05D002766 ORTHO05D002809 1.8e-13 80.5 109 45.0
Actinidia24989 Actinidia chinensis HOM05D002766 ORTHO05D002809 5.2e-13 79.0 83 48.2
Migut.F01190 Erythranthe guttata HOM05D002766 ORTHO05D002809 6.8e-13 78.6 146 38.4
PSO063G4256 Papaver somniferum HOM05D002766 ORTHO05D002809 6.8e-13 78.6 218 32.6
Gohir.A11G077300 Gossypium hirsutum HOM05D002766 ORTHO05D002809 8.9e-13 78.2 151 37.7
FAN03G1252 Fragaria x ananassa HOM05D002766 ORTHO05D002809 1.5e-12 77.4 164 40.9
Lalb_Chr01g0000251 Lupinus albus HOM05D002766 ORTHO05D002809 2.6e-12 76.6 92 51.1
Thecc.01G387300 Theobroma cacao HOM05D002766 ORTHO05D002809 4.4e-12 75.9 104 42.3
BolC7t45043H Brassica oleracea HOM05D002766 ORTHO05D002809 1.7e-11 73.9 119 37.8
Carub.0008s2218 Capsella rubella HOM05D002766 ORTHO05D002809 1.7e-11 73.9 112 37.5
Sp2g24690 Schrenkiella parvula HOM05D002766 ORTHO05D002809 2.9e-11 73.2 110 39.1
Gorai.007G087400 Gossypium raimondii HOM05D002766 ORTHO05D002809 3.7e-11 72.8 154 35.7
Medtr4g036465 Medicago truncatula HOM05D002766 ORTHO05D002809 3.7e-11 72.8 91 45.1
HPP92_022467 Vanilla planifolia HOM05D002766 ORTHO05D002809 4.9e-11 72.4 176 31.2
Actinidia13587 Actinidia chinensis HOM05D002766 ORTHO05D002809 8.3e-11 71.6 111 38.7
Dinv44099 Davidia involucrata HOM05D002766 ORTHO05D002809 8.3e-11 71.6 166 36.7
Gohir.D11G081700 Gossypium hirsutum HOM05D002766 ORTHO05D002809 8.3e-11 71.6 155 35.5
BraA03t13836Z Brassica rapa HOM05D002766 ORTHO05D002809 1.1e-10 71.2 160 35.0
AT5G61490 Arabidopsis thaliana HOM05D002766 ORTHO05D002809 1.4e-10 70.9 110 38.2
arahy.Tifrunner.gnm1.ann1.C8D70D Arachis hypogaea HOM05D002766 ORTHO05D002809 2.4e-10 70.1 158 41.8
Glyma.12G006100 Glycine max HOM05D002766 ORTHO05D002809 2.4e-10 70.1 95 46.3
arahy.Tifrunner.gnm1.ann1.EL3WER Arachis hypogaea HOM05D002766 ORTHO05D002809 4.1e-10 69.3 158 41.8
A03p47090 Brassica napus HOM05D002766 ORTHO05D002809 4.1e-10 69.3 160 34.4
Thhalv10004733m.g Eutrema salsugineum HOM05D002766 ORTHO05D002809 4.1e-10 69.3 112 35.7
HanXRQChr14g0461291 Helianthus annuus HOM05D002766 ORTHO05D002809 7.0e-10 68.6 125 34.4
Aa31LG11G1920 Aethionema arabicum HOM05D002766 ORTHO05D002809 9.2e-10 68.2 165 37.0
Psat3g167080 Pisum sativum HOM05D002766 ORTHO05D002809 1.2e-09 67.8 90 44.4
BcaC06g33157 Brassica carinata HOM05D002766 ORTHO05D002809 2.0e-09 67.0 160 34.4
SalBow2G0493 Salvia bowleyana HOM05D002766 ORTHO05D002809 4.6e-09 65.9 147 34.7
TPR.G3654 Trifolium pratense HOM05D002766 ORTHO05D002809 4.6e-09 65.9 97 46.4
COL.COLO4_12453 Corchorus olitorius HOM05D002766 ORTHO05D002809 1.0e-08 64.7 105 37.1
BcaC06g33154 Brassica carinata HOM05D002766 ORTHO05D002809 1.3e-08 64.3 151 33.8
Duzib138G1521 Durio zibethinus HOM05D002766 ORTHO05D002809 1.3e-08 64.3 163 34.4
Hund11841 Selenicereus undatus HOM05D002766 ORTHO05D002809 1.3e-08 64.3 159 30.2
C07p45200 Brassica napus HOM05D002766 ORTHO05D002809 1.7e-08 63.9 160 33.1
Migut.F00491 Erythranthe guttata HOM05D002766 ORTHO05D002809 1.7e-08 63.9 116 41.4
SGA_v2.0_scaffold44G16556 Striga asiatica HOM05D002766 ORTHO05D002809 1.7e-08 63.9 152 34.9
ATR0057G106 Amborella trichopoda HOM05D002766 ORTHO05D002809 2.3e-08 63.5 102 39.2
Ca_12620_v3 Cicer arietinum L. HOM05D002766 ORTHO05D002809 2.3e-08 63.5 94 41.5
ECA238G1863 Erigeron canadensis HOM05D002766 ORTHO05D002809 2.3e-08 63.5 180 32.2
Ah.10g031490 Amaranthus hybridus HOM05D002766 ORTHO05D002809 3.9e-08 62.8 166 31.3
AL8G38180 Arabidopsis lyrata HOM05D002766 ORTHO05D002809 5.0e-08 62.4 151 32.5
THA.LOC104818512 Tarenaya hassleriana HOM05D002766 ORTHO05D002809 1.1e-07 61.2 148 34.5
Lj3g0017052 Lotus japonicus HOM05D002766 ORTHO05D002809 1.9e-07 60.5 132 37.9
GSVIVG01026926001 Vitis vinifera HOM05D002766 ORTHO05D002809 1.9e-07 60.5 57 50.9
CARHR232560 Cardamine hirsuta HOM05D002766 ORTHO05D002809 7.3e-07 58.5 83 39.8
PGR105G0004 Punica granatum HOM05D002766 ORTHO05D002809 9.5e-07 58.2 176 33.5
QL04p035311 Quercus lobata HOM05D002766 ORTHO05D002809 1.2e-06 57.8 104 33.7
Ciclev10021662m.g Citrus clementina HOM05D002766 ORTHO05D002809 1.6e-06 57.4 107 38.3
Sp7g23180 Schrenkiella parvula HOM05D002766 ORTHO05D002809 1.6e-06 57.4 41 58.5
EL10Ac3g05862 Beta vulgaris HOM05D002766 ORTHO05D002809 3.6e-06 56.2 48 54.2
MD07G1110800 Malus domestica HOM05D002766 ORTHO05D002809 4.7e-06 55.8 91 37.4
CAN.G899.25 Capsicum annuum HOM05D002766 ORTHO05D002809 6.2e-06 55.5 121 33.1
vmacro21045 Vaccinium macrocarpon HOM05D002766 ORTHO05D002809 6.2e-06 55.5 163 29.4
VMungo1127G1434 Vigna mungo HOM05D002766 ORTHO05D002809 8.1e-06 55.1 103 35.9


User provided reference genes

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