Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G237000 Carya illinoinensis HOM05D003935 ORTHO05D005096 8.7e-190 666.8 328 100.0
Cfa012922 Carpinus fangiana HOM05D003935 ORTHO05D005096 7.0e-147 524.2 326 80.7
TWI14G1423 Tripterygium wilfordii HOM05D003935 ORTHO05D005096 8.5e-145 517.3 326 79.8
Manes.06G132800 Manihot esculenta HOM05D003935 ORTHO05D005096 7.2e-144 514.2 326 79.4
QL02p025668 Quercus lobata HOM05D003935 ORTHO05D005096 2.7e-143 512.3 326 79.4
Rhsim09G0190400 Rhododendron simsii HOM05D003935 ORTHO05D005096 2.7e-143 512.3 325 79.1
CSS0046772 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 1.8e-142 509.6 325 79.7
Eucgr.K00175 Eucalyptus grandis HOM05D003935 ORTHO05D005096 1.8e-142 509.6 325 79.1
Lalb_Chr19g0126281 Lupinus albus HOM05D003935 ORTHO05D005096 4.4e-141 505.0 326 77.0
Nn6g33882 Nelumbo nucifera HOM05D003935 ORTHO05D005096 5.7e-141 504.6 326 77.9
Dinv16851 Davidia involucrata HOM05D003935 ORTHO05D005096 2.2e-140 502.7 325 78.5
SGA_v2.0_scaffold44G16558 Striga asiatica HOM05D003935 ORTHO05D005096 2.2e-140 502.7 325 77.2
vmacro09915 Vaccinium macrocarpon HOM05D003935 ORTHO05D005096 2.2e-140 502.7 325 77.8
PGR142G1672 Punica granatum HOM05D003935 ORTHO05D005096 2.8e-140 502.3 326 77.6
Migut.F00500 Erythranthe guttata HOM05D003935 ORTHO05D005096 6.3e-140 501.1 326 77.0
Actinidia01047 Actinidia chinensis HOM05D003935 ORTHO05D005096 8.3e-140 500.7 325 77.2
Haze_21276 Corylus avellana HOM05D003935 ORTHO05D005096 8.3e-140 500.7 333 77.8
TAR374G1483 Trochodendron aralioides HOM05D003935 ORTHO05D005096 1.4e-139 500.0 326 76.7
CSS0045715 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 2.4e-139 499.2 325 78.5
Glyma.09G231000 Glycine max HOM05D003935 ORTHO05D005096 2.4e-139 499.2 326 76.1
Hma1.2p1_1132F.1_g260170 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 5.4e-139 498.0 325 77.8
Lj1C977G12 Lonicera japonica HOM05D003935 ORTHO05D005096 1.2e-138 496.9 339 74.6
CANSAT21G2109 Cannabis sativa HOM05D003935 ORTHO05D005096 1.6e-138 496.5 326 76.1
Thecc.01G388100 Theobroma cacao HOM05D003935 ORTHO05D005096 2.0e-138 496.1 326 76.7
MSTRG.27208 Avicennia marina HOM05D003935 ORTHO05D005096 3.5e-138 495.4 326 76.7
Hma1.2p1_0432F.1_g151940 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 3.5e-138 495.4 325 77.2
Aqoxy7G00829 Aquilegia oxysepala HOM05D003935 ORTHO05D005096 5.9e-138 494.6 326 75.2
Potri.001G126500 Populus trichocarpa HOM05D003935 ORTHO05D005096 2.3e-137 492.7 327 76.8
Sopen06g010820 Solanum pennellii HOM05D003935 ORTHO05D005096 2.3e-137 492.7 325 76.6
Lalb_Chr01g0000281 Lupinus albus HOM05D003935 ORTHO05D005096 2.9e-137 492.3 326 76.1
GSVIVG01018224001 Vitis vinifera HOM05D003935 ORTHO05D005096 3.8e-137 491.9 326 75.5
Solyc06g034160.3 Solanum lycopersicum HOM05D003935 ORTHO05D005096 5.0e-137 491.5 325 76.3
CAN.G330.5 Capsicum annuum HOM05D003935 ORTHO05D005096 6.6e-137 491.1 325 76.3
AUR62002246 Chenopodium quinoa HOM05D003935 ORTHO05D005096 8.6e-137 490.7 325 75.7
Duzib133G0969 Durio zibethinus HOM05D003935 ORTHO05D005096 1.5e-136 490.0 326 76.4
Peaxi162Scf00304g01342 Petunia axillaris HOM05D003935 ORTHO05D005096 1.9e-136 489.6 324 76.9
Gorai.004G165200 Gossypium raimondii HOM05D003935 ORTHO05D005096 4.3e-136 488.4 326 76.7
THA.LOC104801570 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 5.6e-136 488.0 325 76.0
Gohir.D08G159150 Gossypium hirsutum HOM05D003935 ORTHO05D005096 7.3e-136 487.6 326 76.7
AL8G38190 Arabidopsis lyrata HOM05D003935 ORTHO05D005096 9.5e-136 487.3 325 74.5
Potri.003G107000 Populus trichocarpa HOM05D003935 ORTHO05D005096 9.5e-136 487.3 328 76.2
Glyma.12G005700 Glycine max HOM05D003935 ORTHO05D005096 1.6e-135 486.5 326 75.5
Nitab4.5_0000448g0060 Nicotiana tabacum HOM05D003935 ORTHO05D005096 1.6e-135 486.5 325 76.3
Thhalv10004633m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 2.1e-135 486.1 326 75.5
PSO063G2499 Papaver somniferum HOM05D003935 ORTHO05D005096 2.1e-135 486.1 328 75.9
THA.LOC104819415 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 2.1e-135 486.1 326 75.8
CARHR275270 Cardamine hirsuta HOM05D003935 ORTHO05D005096 3.6e-135 485.3 325 74.5
Carub.0008s2219 Capsella rubella HOM05D003935 ORTHO05D005096 4.7e-135 485.0 325 74.5
Cpa.g.sc16.168 Carica papaya HOM05D003935 ORTHO05D005096 4.7e-135 485.0 326 75.2
PGSC0003DMG400021594 Solanum tuberosum HOM05D003935 ORTHO05D005096 4.7e-135 485.0 325 75.4
Oeu031400.2 Olea europaea HOM05D003935 ORTHO05D005096 6.1e-135 484.6 326 75.2
QL04p034713 Quercus lobata HOM05D003935 ORTHO05D005096 6.1e-135 484.6 327 76.1
COL.COLO4_12445 Corchorus olitorius HOM05D003935 ORTHO05D005096 1.0e-134 483.8 325 75.1
AT5G61500 Arabidopsis thaliana HOM05D003935 ORTHO05D005096 1.4e-134 483.4 325 74.2
Sp2g24700 Schrenkiella parvula HOM05D003935 ORTHO05D005096 1.4e-134 483.4 325 74.5
Atru.chr1.845 Acer truncatum HOM05D003935 ORTHO05D005096 1.8e-134 483.0 325 75.1
PSO782G0781 Papaver somniferum HOM05D003935 ORTHO05D005096 1.8e-134 483.0 328 75.6
Gohir.A08G137866 Gossypium hirsutum HOM05D003935 ORTHO05D005096 3.0e-134 482.3 326 76.1
Lj3g0013928 Lotus japonicus HOM05D003935 ORTHO05D005096 5.2e-134 481.5 326 73.3
Gohir.D07G154200 Gossypium hirsutum HOM05D003935 ORTHO05D005096 6.8e-134 481.1 327 75.2
Gorai.001G176400 Gossypium raimondii HOM05D003935 ORTHO05D005096 6.8e-134 481.1 327 75.2
TPR.G3680 Trifolium pratense HOM05D003935 ORTHO05D005096 1.2e-133 480.3 326 74.8
VMungo1127G0071 Vigna mungo HOM05D003935 ORTHO05D005096 2.0e-133 479.6 326 73.9
Psat7g207040 Pisum sativum HOM05D003935 ORTHO05D005096 2.6e-133 479.2 326 74.5
Duzib138G0818 Durio zibethinus HOM05D003935 ORTHO05D005096 3.4e-133 478.8 326 75.5
Sabra01G0097600 Salix brachista HOM05D003935 ORTHO05D005096 5.7e-133 478.0 327 73.7
Phvul.011G006500 Phaseolus vulgaris HOM05D003935 ORTHO05D005096 9.8e-133 477.2 326 74.2
BcaC06g33155 Brassica carinata HOM05D003935 ORTHO05D005096 1.7e-132 476.5 326 73.6
CiPaw.14G023500 Carya illinoinensis HOM05D003935 ORTHO05D005096 1.7e-132 476.5 326 74.2
Gohir.A07G148000 Gossypium hirsutum HOM05D003935 ORTHO05D005096 2.2e-132 476.1 327 74.0
SalBow1G3743 Salvia bowleyana HOM05D003935 ORTHO05D005096 4.9e-132 474.9 326 73.3
MSTRG.8834 Avicennia marina HOM05D003935 ORTHO05D005096 8.3e-132 474.2 326 72.1
CsaV3_6G008640 Cucumis sativus L. HOM05D003935 ORTHO05D005096 1.1e-131 473.8 328 72.0
HanXRQChr15g0485951 Helianthus annuus HOM05D003935 ORTHO05D005096 1.4e-131 473.4 325 72.0
Sabra03G0073800 Salix brachista HOM05D003935 ORTHO05D005096 1.4e-131 473.4 377 68.2
Sed0016106 Sechium edule HOM05D003935 ORTHO05D005096 5.4e-131 471.5 328 72.0
Medtr4g036265 Medicago truncatula HOM05D003935 ORTHO05D005096 7.0e-131 471.1 326 73.3
arahy.Tifrunner.gnm1.ann1.YZL4IN Arachis hypogaea HOM05D003935 ORTHO05D005096 1.2e-130 470.3 328 72.9
ClCG06G002480 Citrullus lanatus HOM05D003935 ORTHO05D005096 1.2e-130 470.3 328 72.0
HanXRQChr16g0512861 Helianthus annuus HOM05D003935 ORTHO05D005096 1.6e-130 469.9 325 71.7
Sp6g35250 Schrenkiella parvula HOM05D003935 ORTHO05D005096 1.6e-130 469.9 325 72.0
Actinidia13591 Actinidia chinensis HOM05D003935 ORTHO05D005096 2.7e-130 469.2 321 75.4
Cc02_g04470 Coffea canephora HOM05D003935 ORTHO05D005096 3.5e-130 468.8 330 70.6
DCAR_020181 Daucus carota HOM05D003935 ORTHO05D005096 3.5e-130 468.8 325 72.0
Nitab4.5_0000262g0090 Nicotiana tabacum HOM05D003935 ORTHO05D005096 3.5e-130 468.8 325 74.5
MELO3C022280.2 Cucumis melo HOM05D003935 ORTHO05D005096 4.6e-130 468.4 328 71.3
Thhalv10014155m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 7.8e-130 467.6 325 72.0
Aa31LG11G1910 Aethionema arabicum HOM05D003935 ORTHO05D005096 1.5e-128 463.4 324 72.5
Rhsim03G0165100 Rhododendron simsii HOM05D003935 ORTHO05D005096 2.8e-127 459.1 349 69.3
CDE04G2838 Ceratophyllum demersum HOM05D003935 ORTHO05D005096 3.6e-127 458.8 322 72.0
Lsat_1_v5_gn_5_9340 Lactuca sativa HOM05D003935 ORTHO05D005096 3.6e-127 458.8 325 70.2
arahy.Tifrunner.gnm1.ann1.2B4GQV Arachis hypogaea HOM05D003935 ORTHO05D005096 5.2e-126 454.9 321 72.0
BolC7t45044H Brassica oleracea HOM05D003935 ORTHO05D005096 5.2e-126 454.9 327 71.3
unitig_37.g12492 Utricularia gibba HOM05D003935 ORTHO05D005096 8.9e-126 454.1 326 71.8
Prupe.2G123000 Prunus persica HOM05D003935 ORTHO05D005096 1.2e-125 453.8 326 71.2
arahy.Tifrunner.gnm1.ann1.16SP4W Arachis hypogaea HOM05D003935 ORTHO05D005096 1.5e-125 453.4 328 70.7
C07p45210 Brassica napus HOM05D003935 ORTHO05D005096 1.5e-125 453.4 327 71.3
FAN06G4162 Fragaria x ananassa HOM05D003935 ORTHO05D005096 6.4e-124 448.0 328 70.4
FvH4_7g09530 Fragaria vesca HOM05D003935 ORTHO05D005096 8.3e-124 447.6 328 70.4
FAN03G1633 Fragaria x ananassa HOM05D003935 ORTHO05D005096 8.3e-124 447.6 328 70.7
FAN06G5089 Fragaria x ananassa HOM05D003935 ORTHO05D005096 8.3e-124 447.6 328 70.4
FAN01G1603 Fragaria x ananassa HOM05D003935 ORTHO05D005096 1.1e-123 447.2 328 70.1
BcaB05g21604 Brassica carinata HOM05D003935 ORTHO05D005096 1.9e-123 446.4 327 70.6
FAN10G2569 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.4e-123 446.0 328 70.1
FAN10G4028 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.4e-123 446.0 328 70.1
MD02G1218100 Malus domestica HOM05D003935 ORTHO05D005096 9.2e-123 444.1 326 70.6
arahy.Tifrunner.gnm1.ann1.9TCX0P Arachis hypogaea HOM05D003935 ORTHO05D005096 1.6e-122 443.4 321 71.0
Ciclev10005442m.g Citrus clementina HOM05D003935 ORTHO05D005096 2.0e-122 443.0 332 69.0
RcHm_v2.0_Chr1g0346321 Rosa chinensis HOM05D003935 ORTHO05D005096 6.0e-122 441.4 328 70.7
BolC2t06285H Brassica oleracea HOM05D003935 ORTHO05D005096 7.8e-122 441.0 328 70.1
Hund04562 Selenicereus undatus HOM05D003935 ORTHO05D005096 6.6e-121 438.0 322 68.6
Haze_02753 Corylus avellana HOM05D003935 ORTHO05D005096 1.9e-120 436.4 459 54.0
EL10Ac3g05885 Beta vulgaris HOM05D003935 ORTHO05D005096 1.2e-119 433.7 297 73.4
BcaC03g13194 Brassica carinata HOM05D003935 ORTHO05D005096 1.1e-118 430.6 328 68.9
Aa31LG3G18800 Aethionema arabicum HOM05D003935 ORTHO05D005096 8.9e-118 427.6 324 68.8
BraA02t04926Z Brassica rapa HOM05D003935 ORTHO05D005096 2.0e-117 426.4 325 68.6
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 7.5e-117 424.5 324 68.8
ECA232G4201 Erigeron canadensis HOM05D003935 ORTHO05D005096 7.5e-117 424.5 310 67.7
Ah.07g207480 Amaranthus hybridus HOM05D003935 ORTHO05D005096 9.8e-117 424.1 300 72.0
Sc10g0008570 Simmondsia chinensis HOM05D003935 ORTHO05D005096 2.9e-116 422.5 295 71.5
Nitab4.5_0001267g0110 Nicotiana tabacum HOM05D003935 ORTHO05D005096 1.9e-115 419.9 294 73.5
Ca_12623_v3 Cicer arietinum L. HOM05D003935 ORTHO05D005096 1.6e-114 416.8 326 66.9
Mapoly0003s0208 Marchantia polymorpha HOM05D003935 ORTHO05D005096 4.6e-114 415.2 329 63.8
A03p47100 Brassica napus HOM05D003935 ORTHO05D005096 1.7e-113 413.3 329 66.0
BraA03t13837Z Brassica rapa HOM05D003935 ORTHO05D005096 1.7e-113 413.3 329 66.0
Pp3c8_11900 Physcomitrium patens HOM05D003935 ORTHO05D005096 4.0e-110 402.1 322 64.9
Os01g0200000 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 2.4e-107 392.9 327 61.8
Lsat_1_v5_gn_9_51820 Lactuca sativa HOM05D003935 ORTHO05D005096 4.1e-107 392.1 325 63.4
Actinidia24986 Actinidia chinensis HOM05D003935 ORTHO05D005096 2.6e-101 372.9 257 75.1
ATR0057G070 Amborella trichopoda HOM05D003935 ORTHO05D005096 1.3e-100 370.5 296 63.5
SMO134G0003 Selaginella moellendorffii HOM05D003935 ORTHO05D005096 2.2e-100 369.8 325 58.8
Zm00001eb391210 Zea mays HOM05D003935 ORTHO05D005096 1.6e-98 363.6 325 58.8
BcaC06g33158 Brassica carinata HOM05D003935 ORTHO05D005096 1.0e-97 360.9 277 69.0
AUR62015457 Chenopodium quinoa HOM05D003935 ORTHO05D005096 5.1e-81 305.4 230 67.8
Nitab4.5_0001358g0020 Nicotiana tabacum HOM05D003935 ORTHO05D005096 6.9e-78 295.0 172 82.0
Dinv06578 Davidia involucrata HOM05D003935 ORTHO05D005096 1.5e-77 293.9 168 83.9
CBR_g28076 Chara braunii HOM05D003935 ORTHO05D000002 9.0e-70 268.1 269 52.8
SEGI_20183 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 7.7e-61 238.4 168 66.1
AagrBONN_evm.TU.Sc2ySwM_369.216 Anthoceros agrestis HOM05D003935 ORTHO05D005096 3.2e-59 233.0 268 48.9
MCO14G260 Micromonas commoda HOM05D003935 ORTHO05D005096 7.2e-59 231.9 321 43.0
Cre02.g102350 Chlamydomonas reinhardtii HOM05D003935 ORTHO05D005096 4.6e-58 229.2 322 42.2
MD07G1099100 Malus domestica HOM05D003935 ORTHO05D005096 4.6e-58 229.2 209 59.8
arahy.Tifrunner.gnm1.ann1.VY970J Arachis hypogaea HOM05D003935 ORTHO05D005096 4.4e-56 222.6 185 64.9
Nn051s41922 Nelumbo nucifera HOM05D003935 ORTHO05D005096 3.8e-52 209.5 168 65.5
Nn1g09078 Nelumbo nucifera HOM05D003935 ORTHO05D005096 3.8e-52 209.5 168 65.5
Os10g0560450 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 3.2e-51 206.5 182 58.2
PRCOL_00004022 Prasinoderma coloniale HOM05D003935 ORTHO05D005096 3.3e-48 196.4 317 38.5
arahy.Tifrunner.gnm1.ann1.XHAQ77 Arachis hypogaea HOM05D003935 ORTHO05D005096 7.4e-48 195.3 205 55.1
CsaV3_4G004080 Cucumis sativus L. HOM05D003935 ORTHO05D044846 4.1e-46 189.5 294 44.2
Rhsim01G0073400 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.3e-44 184.5 149 66.4
Zm00001eb216570 Zea mays HOM05D003935 ORTHO05D005096 6.5e-44 182.2 129 68.2
Rhsim06G0236800 Rhododendron simsii HOM05D003935 ORTHO05D005096 3.2e-43 179.9 142 66.2
Haze_27326 Corylus avellana HOM05D003935 ORTHO05D005096 5.5e-43 179.1 325 34.8
Zm00001eb003720 Zea mays HOM05D003935 ORTHO05D005096 1.0e-41 174.9 108 74.1
Zm00001eb078430 Zea mays HOM05D003935 ORTHO05D005096 1.0e-41 174.9 108 74.1
Zm00001eb363440 Zea mays HOM05D003935 ORTHO05D005096 8.8e-41 171.8 108 73.1
Rhsim11G0131000 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.7e-39 167.5 179 54.7
Nitab4.5_0001358g0040 Nicotiana tabacum HOM05D003935 ORTHO05D001473 1.1e-38 164.9 129 69.0
AL7G47000 Arabidopsis lyrata HOM05D003935 ORTHO05D003430 1.8e-38 164.1 109 70.6
BcaB05g21605 Brassica carinata HOM05D003935 ORTHO05D005096 1.8e-38 164.1 134 61.2
MELO3C032833.2 Cucumis melo HOM05D003935 ORTHO05D044846 5.0e-36 156.0 318 39.6
Rhsim06G0096100 Rhododendron simsii HOM05D003935 ORTHO05D005096 9.4e-35 151.8 116 70.7
SEGI_13739 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 4.1e-30 136.3 117 62.4
BcaB01g00746 Brassica carinata HOM05D003935 ORTHO05D005096 1.7e-28 131.0 103 61.2
BcaC04g19029 Brassica carinata HOM05D003935 ORTHO05D005096 1.5e-27 127.9 119 58.8
SEGI_32586 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 8.8e-25 118.6 67 80.6
Lj2A404G32 Lonicera japonica HOM05D000092 ORTHO05D000042 1.7e-23 114.4 294 29.6
A09p20840 Brassica napus HOM05D000772 ORTHO05D003239 4.1e-22 109.8 75 70.7
BraA09t37687Z Brassica rapa HOM05D000772 ORTHO05D003239 4.1e-22 109.8 75 70.7
MD07G1099000 Malus domestica HOM05D003935 ORTHO05D005096 5.9e-21 105.9 55 83.6
CBR_g28077 Chara braunii HOM05D003935 ORTHO05D005096 2.9e-20 103.6 72 65.3
Actinidia10778 Actinidia chinensis HOM05D003935 ORTHO05D005096 4.3e-19 99.8 90 64.4
Rhsim12G0075300 Rhododendron simsii HOM05D016728 ORTHO05D338590 1.3e-15 88.2 102 51.0
arahy.Tifrunner.gnm1.ann1.W2J7UU Arachis hypogaea HOM05D003935 ORTHO05D023770 1.7e-15 87.8 48 79.2
Zm00001eb269920 Zea mays HOM05D001580 ORTHO05D001517 1.7e-15 87.8 52 78.8
C03p26610 Brassica napus HOM05D003935 ORTHO05D023770 1.1e-14 85.1 48 77.1
SalBow2G0135 Salvia bowleyana HOM05D003935 ORTHO05D357983 1.4e-14 84.7 42 90.5
Lj9A23G20 Lonicera japonica HOM05D000092 ORTHO05D000042 1.9e-11 74.3 135 34.8
BcaC03g17887 Brassica carinata HOM05D003935 ORTHO05D005096 8.9e-09 65.5 49 63.3
Zm00001eb395010 Zea mays HOM05D034860 ORTHO05D442630 1.4e-06 58.2 37 62.2
Zm00001eb363380 Zea mays HOM05D003935 ORTHO05D445556 3.2e-06 57.0 39 59.0


User provided reference genes

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