Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G235800 Carya illinoinensis HOM05D004571 ORTHO05D005334 1.2e-48 196.4 115 100.0
Haze_21312 Corylus avellana HOM05D004571 ORTHO05D005334 2.6e-40 168.7 88 92.0
CiPaw.08G002900 Carya illinoinensis HOM05D004571 ORTHO05D005334 5.8e-40 167.5 115 73.9
COL.COLO4_24652 Corchorus olitorius HOM05D004571 ORTHO05D005334 1.8e-36 156.0 84 85.7
MD15G1405800 Malus domestica HOM05D004571 ORTHO05D005334 5.1e-36 154.5 87 82.8
MD08G1217900 Malus domestica HOM05D004571 ORTHO05D005334 8.7e-36 153.7 87 81.6
Prupe.1G555400 Prunus persica HOM05D004571 ORTHO05D005334 8.7e-36 153.7 88 80.7
TWI14G1164 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 1.1e-35 153.3 84 82.1
Ca_13497_v3 Cicer arietinum L. HOM05D004571 ORTHO05D005334 7.4e-35 150.6 87 79.3
Glyma.04G256400 Glycine max HOM05D004571 ORTHO05D005334 9.6e-35 150.2 89 76.4
TPR.G25514 Trifolium pratense HOM05D004571 ORTHO05D005334 9.6e-35 150.2 87 79.3
Lj3g0024961 Lotus japonicus HOM05D004571 ORTHO05D005334 1.6e-34 149.4 88 78.4
Glyma.06G325200 Glycine max HOM05D004571 ORTHO05D005334 2.1e-34 149.1 89 75.3
Sp5g27250 Schrenkiella parvula HOM05D004571 ORTHO05D005334 4.8e-34 147.9 92 77.2
CsaV3_5G040560 Cucumis sativus L. HOM05D004571 ORTHO05D005334 8.1e-34 147.1 87 78.2
Psat1g003360 Pisum sativum HOM05D004571 ORTHO05D005334 8.1e-34 147.1 87 79.3
QL02p026432 Quercus lobata HOM05D004571 ORTHO05D005334 8.1e-34 147.1 78 88.5
MELO3C022229.2 Cucumis melo HOM05D004571 ORTHO05D005334 1.1e-33 146.7 87 78.2
CANSAT25G3741 Cannabis sativa HOM05D004571 ORTHO05D005334 1.4e-33 146.4 88 76.1
Medtr3g005050 Medicago truncatula HOM05D004571 ORTHO05D005334 1.4e-33 146.4 84 79.8
Thecc.08G192400 Theobroma cacao HOM05D004571 ORTHO05D005334 1.4e-33 146.4 84 78.6
BcaB03g14960 Brassica carinata HOM05D004571 ORTHO05D005334 1.8e-33 146.0 90 76.7
Ciclev10002721m.g Citrus clementina HOM05D004571 ORTHO05D005334 1.8e-33 146.0 80 82.5
Phvul.005G000100 Phaseolus vulgaris HOM05D004571 ORTHO05D005334 1.8e-33 146.0 85 78.8
Atru.chr13.2366 Acer truncatum HOM05D004571 ORTHO05D005334 3.1e-33 145.2 90 76.7
Cpa.g.sc66.1 Carica papaya HOM05D004571 ORTHO05D005334 5.3e-33 144.4 84 78.6
PGR042G2098 Punica granatum HOM05D004571 ORTHO05D005334 5.3e-33 144.4 85 77.6
FAN13G1323 Fragaria x ananassa HOM05D004571 ORTHO05D005334 9.0e-33 143.7 90 76.7
FAN18G0720 Fragaria x ananassa HOM05D004571 ORTHO05D005334 9.0e-33 143.7 90 76.7
Hma1.2p1_0374F.1_g138460 Hydrangea macrophylla HOM05D004571 ORTHO05D005334 9.0e-33 143.7 84 82.1
FvH4_5g31700 Fragaria vesca HOM05D004571 ORTHO05D005334 1.2e-32 143.3 90 76.7
VMungo1080G1505 Vigna mungo HOM05D004571 ORTHO05D005334 1.5e-32 142.9 83 78.3
Dinv41758 Davidia involucrata HOM05D004571 ORTHO05D005334 2.0e-32 142.5 88 78.4
A07p38280 Brassica napus HOM05D004571 ORTHO05D005334 3.4e-32 141.7 86 74.4
FAN04G0250 Fragaria x ananassa HOM05D004571 ORTHO05D005334 3.4e-32 141.7 90 75.6
PSO017G1736 Papaver somniferum HOM05D004571 ORTHO05D005334 4.5e-32 141.4 83 78.3
PSO170G5138 Papaver somniferum HOM05D004571 ORTHO05D005334 4.5e-32 141.4 83 78.3
ClCG08G000160 Citrullus lanatus HOM05D004571 ORTHO05D005334 7.6e-32 140.6 86 75.6
Rhsim11G0053000 Rhododendron simsii HOM05D004571 ORTHO05D005334 7.6e-32 140.6 87 78.2
Gorai.013G137900 Gossypium raimondii HOM05D004571 ORTHO05D005334 1.0e-31 140.2 84 76.2
RcHm_v2.0_Chr7g0227581 Rosa chinensis HOM05D004571 ORTHO05D005334 1.3e-31 139.8 90 73.3
CARHR065020 Cardamine hirsuta HOM05D004571 ORTHO05D005334 1.7e-31 139.4 92 72.8
Potri.013G105766 Populus trichocarpa HOM05D004571 ORTHO05D005334 1.7e-31 139.4 79 82.3
Gohir.D13G122900 Gossypium hirsutum HOM05D004571 ORTHO05D005334 2.2e-31 139.0 84 75.0
GSVIVG01026083001 Vitis vinifera HOM05D004571 ORTHO05D005334 2.2e-31 139.0 87 77.0
C06p46340 Brassica napus HOM05D004571 ORTHO05D005334 2.9e-31 138.7 85 75.3
BolC6t39679H Brassica oleracea HOM05D004571 ORTHO05D005334 2.9e-31 138.7 85 75.3
Gohir.D13G123000 Gossypium hirsutum HOM05D004571 ORTHO05D005334 2.9e-31 138.7 84 75.0
AT1G72170 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 3.8e-31 138.3 94 72.3
CANSAT56G3739 Cannabis sativa HOM05D004571 ORTHO05D005334 3.8e-31 138.3 88 72.7
Gohir.A13G119100 Gossypium hirsutum HOM05D004571 ORTHO05D005334 4.9e-31 137.9 84 73.8
Aa31LG4G8400 Aethionema arabicum HOM05D004571 ORTHO05D005334 6.5e-31 137.5 90 73.3
BraA07t31392Z Brassica rapa HOM05D004571 ORTHO05D005334 6.5e-31 137.5 86 72.1
Potri.019G079101 Populus trichocarpa HOM05D004571 ORTHO05D005334 6.5e-31 137.5 78 82.1
THA.LOC104809727 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 6.5e-31 137.5 101 70.3
TAR381G0940 Trochodendron aralioides HOM05D004571 ORTHO05D005334 6.5e-31 137.5 84 78.6
THA.LOC104800135 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 8.4e-31 137.1 93 72.0
Gohir.A13G119200 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.9e-30 136.0 84 73.8
Carub.0002s1897 Capsella rubella HOM05D004571 ORTHO05D005334 2.5e-30 135.6 89 73.0
Actinidia29414 Actinidia chinensis HOM05D004571 ORTHO05D005334 3.2e-30 135.2 88 77.3
AL2G31830 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 3.2e-30 135.2 89 73.0
TAR628G0297 Trochodendron aralioides HOM05D004571 ORTHO05D005334 4.2e-30 134.8 88 76.1
Sabra19G0089800 Salix brachista HOM05D004571 ORTHO05D005334 5.5e-30 134.4 79 79.7
Nn1g08340 Nelumbo nucifera HOM05D004571 ORTHO05D005334 7.1e-30 134.0 84 73.8
Manes.02G223200 Manihot esculenta HOM05D004571 ORTHO05D005334 1.6e-29 132.9 73 82.2
Oeu044957.1 Olea europaea HOM05D004571 ORTHO05D005334 2.7e-29 132.1 88 75.0
Thhalv10019513m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 3.5e-29 131.7 92 70.7
C06p35100 Brassica napus HOM05D004571 ORTHO05D005334 4.6e-29 131.3 93 68.8
Sabra13G0091300 Salix brachista HOM05D004571 ORTHO05D005334 4.6e-29 131.3 79 79.7
Migut.C01321 Erythranthe guttata HOM05D004571 ORTHO05D005334 6.0e-29 131.0 77 79.2
BolC6t38614H Brassica oleracea HOM05D004571 ORTHO05D005334 7.9e-29 130.6 93 67.7
Sed0021715 Sechium edule HOM05D004571 ORTHO05D005334 7.9e-29 130.6 88 71.6
Actinidia03516 Actinidia chinensis HOM05D004571 ORTHO05D005334 1.0e-28 130.2 88 73.9
CDE08G1034 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 1.3e-28 129.8 77 79.2
Duzib116G0804 Durio zibethinus HOM05D004571 ORTHO05D005334 2.3e-28 129.0 97 67.0
A07p30330 Brassica napus HOM05D004571 ORTHO05D005334 3.0e-28 128.6 88 67.0
BraA07t30670Z Brassica rapa HOM05D004571 ORTHO05D005334 3.0e-28 128.6 88 67.0
CDE02G1838 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 3.9e-28 128.3 93 68.8
Nn5g27495 Nelumbo nucifera HOM05D004571 ORTHO05D005334 3.9e-28 128.3 81 76.5
ECA247G3605 Erigeron canadensis HOM05D004571 ORTHO05D005334 5.1e-28 127.9 79 74.7
MD17G1233400 Malus domestica HOM05D004571 ORTHO05D005334 6.7e-28 127.5 88 70.5
DCAR_014081 Daucus carota HOM05D004571 ORTHO05D005334 1.5e-27 126.3 80 75.0
Aa31LG7G6430 Aethionema arabicum HOM05D004571 ORTHO05D005334 1.9e-27 125.9 92 68.5
AT1G22520 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 1.9e-27 125.9 81 74.1
AUR62004601 Chenopodium quinoa HOM05D004571 ORTHO05D005334 2.5e-27 125.6 88 68.2
AUR62023543 Chenopodium quinoa HOM05D004571 ORTHO05D005334 2.5e-27 125.6 88 68.2
HanXRQChr02g0036591 Helianthus annuus HOM05D004571 ORTHO05D005334 3.3e-27 125.2 76 80.3
HanXRQChr04g0101791 Helianthus annuus HOM05D004571 ORTHO05D005334 3.3e-27 125.2 76 76.3
Ah.05g178570 Amaranthus hybridus HOM05D004571 ORTHO05D005334 5.7e-27 124.4 79 78.5
Sc23g0001520 Simmondsia chinensis HOM05D004571 ORTHO05D005334 5.7e-27 124.4 87 69.0
Nitab4.5_0001463g0030 Nicotiana tabacum HOM05D004571 ORTHO05D005334 9.6e-27 123.6 87 67.8
Nitab4.5_0005616g0050 Nicotiana tabacum HOM05D004571 ORTHO05D005334 9.6e-27 123.6 87 67.8
Hund27115 Selenicereus undatus HOM05D004571 ORTHO05D005334 9.6e-27 123.6 84 71.4
Zm00001eb063990 Zea mays HOM05D004571 ORTHO05D005334 9.6e-27 123.6 85 69.4
AL1G36060 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 1.6e-26 122.9 81 72.8
Carub.0001s2205 Capsella rubella HOM05D004571 ORTHO05D005334 2.1e-26 122.5 80 76.2
Os03g0840900 Oryza sativa ssp. japonica HOM05D004571 ORTHO05D005334 2.1e-26 122.5 82 67.1
ATR1136G048 Amborella trichopoda HOM05D004571 ORTHO05D005334 2.8e-26 122.1 88 68.2
BcaB03g11911 Brassica carinata HOM05D004571 ORTHO05D005334 2.8e-26 122.1 81 72.8
EL10Ac1g00135 Beta vulgaris HOM05D004571 ORTHO05D005334 4.8e-26 121.3 84 69.0
SEGI_09168 Sequoiadendron giganteum HOM05D004571 ORTHO05D005334 6.3e-26 120.9 89 62.9
arahy.Tifrunner.gnm1.ann1.ET922W Arachis hypogaea HOM05D004571 ORTHO05D005334 8.2e-26 120.6 76 73.7
arahy.Tifrunner.gnm1.ann1.Q0KDHL Arachis hypogaea HOM05D008831 ORTHO05D005334 8.2e-26 120.6 76 73.7
Lsat_1_v5_gn_1_25881 Lactuca sativa HOM05D004571 ORTHO05D005334 8.2e-26 120.6 76 77.6
Solyc11g027870.2 Solanum lycopersicum HOM05D004571 ORTHO05D005334 1.4e-25 119.8 80 68.8
Sopen11g022630 Solanum pennellii HOM05D004571 ORTHO05D005334 1.4e-25 119.8 80 68.8
PGSC0003DMG400025645 Solanum tuberosum HOM05D004571 ORTHO05D005334 1.4e-25 119.8 80 67.5
BraA08t34777Z Brassica rapa HOM05D004571 ORTHO05D005334 2.4e-25 119.0 82 70.7
CARHR022880 Cardamine hirsuta HOM05D004571 ORTHO05D005334 2.4e-25 119.0 78 73.1
Zm00001eb211000 Zea mays HOM05D004571 ORTHO05D005334 2.4e-25 119.0 82 67.1
BcaB03g14198 Brassica carinata HOM05D004571 ORTHO05D005334 3.1e-25 118.6 79 70.9
SalBow7G4145 Salvia bowleyana HOM05D004571 ORTHO05D005334 3.1e-25 118.6 81 66.7
BcaC07g39167 Brassica carinata HOM05D004571 ORTHO05D005334 4.1e-25 118.2 82 70.7
C08p21600 Brassica napus HOM05D004571 ORTHO05D005334 4.1e-25 118.2 82 70.7
CSS0010340 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 4.1e-25 118.2 89 65.2
Thhalv10009192m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 4.1e-25 118.2 80 71.2
Sp1g20030 Schrenkiella parvula HOM05D004571 ORTHO05D005334 4.1e-25 118.2 80 71.2
Aqoxy5G02645 Aquilegia oxysepala HOM05D004571 ORTHO05D005334 5.3e-25 117.9 88 69.3
BolC8t49798H Brassica oleracea HOM05D004571 ORTHO05D005334 1.5e-24 116.3 82 68.3
unitig_26.g9866 Utricularia gibba HOM05D004571 ORTHO05D005334 2.6e-24 115.5 80 68.8
SGA_v2.0_scaffold24G10606 Striga asiatica HOM05D004571 ORTHO05D005334 4.5e-24 114.8 79 65.8
A08p28490 Brassica napus HOM05D004571 ORTHO05D005334 1.0e-23 113.6 64 79.7
ECA246G2468 Erigeron canadensis HOM05D004571 ORTHO05D005334 5.0e-23 111.3 79 68.4
DCAR_017443 Daucus carota HOM05D004571 ORTHO05D005334 1.1e-22 110.2 69 73.9
SalBow5G3518 Salvia bowleyana HOM05D002016 ORTHO05D002251 1.1e-22 110.2 90 58.9
HPP92_012688 Vanilla planifolia HOM05D004571 ORTHO05D005334 1.4e-22 109.8 76 69.7
MBI16_g31756_MAGBIO Magnolia biondii HOM05D004571 ORTHO05D005334 3.2e-22 108.6 67 76.1
HPP92_012699 Vanilla planifolia HOM05D004571 ORTHO05D005334 4.2e-22 108.2 76 68.4
HanXRQChr13g0402341 Helianthus annuus HOM05D004571 ORTHO05D005334 9.3e-22 107.1 81 66.7
A07p14330 Brassica napus HOM05D004571 ORTHO05D005334 7.9e-21 104.0 77 63.6
BraA07t29189Z Brassica rapa HOM05D004571 ORTHO05D005334 7.9e-21 104.0 77 63.6
Peaxi162Scf00076g00210 Petunia axillaris HOM05D004571 ORTHO05D005334 1.0e-20 103.6 98 56.1
CANSAT80G2522 Cannabis sativa HOM05D004571 ORTHO05D005334 3.0e-20 102.1 78 64.1
Cc10_g09660 Coffea canephora HOM05D004571 ORTHO05D005334 3.9e-20 101.7 74 58.1
HPP92_016944 Vanilla planifolia HOM05D004571 ORTHO05D005334 6.7e-20 100.9 67 68.7
AagrBONN_evm.TU.Sc2ySwM_344.525 Anthoceros agrestis HOM05D004571 ORTHO05D005334 1.5e-19 99.8 81 59.3
Pp3c5_3370 Physcomitrium patens HOM05D004571 ORTHO05D005334 7.4e-19 97.4 68 66.2
Peaxi162Scf00688g00440 Petunia axillaris HOM05D004571 ORTHO05D005334 1.3e-18 96.7 87 54.0
Pp3c6_25110 Physcomitrium patens HOM05D004571 ORTHO05D005334 1.3e-18 96.7 68 66.2
CBR_g28554 Chara braunii HOM05D004571 ORTHO05D005334 2.2e-18 95.9 83 59.0
Pp3c16_13970 Physcomitrium patens HOM05D004571 ORTHO05D005334 2.4e-17 92.4 65 66.2
PSO170G6605 Papaver somniferum HOM05D004571 ORTHO05D005334 4.1e-17 91.7 74 59.5
Mapoly0097s0059 Marchantia polymorpha HOM05D004571 ORTHO05D005334 6.9e-17 90.9 63 63.5
SalBow8G4375 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.2e-16 90.1 58 70.7
SalBow1G4736 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.5e-16 89.7 71 62.0
SalBow7G3147 Salvia bowleyana HOM05D004571 ORTHO05D005334 2.0e-16 89.4 58 70.7
SMO170G0007 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 7.7e-16 87.4 60 65.0
CSS0023243 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 1.0e-15 87.0 61 65.6
AagrBONN_evm.TU.Sc2ySwM_117.1227 Anthoceros agrestis HOM05D004571 ORTHO05D005334 5.0e-15 84.7 64 59.4
C07p21100 Brassica napus HOM05D004571 ORTHO05D005334 1.1e-14 83.6 115 42.6
SalBow1G5773 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.6e-13 79.7 52 69.2
Gorai.013G138000 Gossypium raimondii HOM05D004571 ORTHO05D005334 1.4e-12 76.6 44 75.0
SMO356G0601 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 6.7e-12 74.3 63 49.2
TWI23G0269 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 1.1e-11 73.6 39 82.1
BcaC06g34972 Brassica carinata HOM05D004571 ORTHO05D005334 8.2e-10 67.4 44 72.7
PRCOL_00006286 Prasinoderma coloniale HOM05D004571 ORTHO05D005334 4.1e-09 65.1 72 44.4


User provided reference genes

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