Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G230500 Carya illinoinensis HOM05D003524 ORTHO05D003988 6.4e-51 203.8 101 100.0
Cfa013050 Carpinus fangiana HOM05D003524 ORTHO05D003988 2.8e-38 161.8 101 75.2
Haze_21415 Corylus avellana HOM05D003524 ORTHO05D003988 2.8e-38 161.8 100 77.0
QL02p018819 Quercus lobata HOM05D003524 ORTHO05D003988 3.7e-38 161.4 100 76.0
Haze_21413 Corylus avellana HOM05D003524 ORTHO05D003988 8.2e-38 160.2 99 75.8
MELO3C016955.2 Cucumis melo HOM05D003524 ORTHO05D003988 2.0e-36 155.6 101 72.3
CsaV3_4G036500 Cucumis sativus L. HOM05D003524 ORTHO05D003988 1.0e-35 153.3 101 72.3
TWI34G0563 Tripterygium wilfordii HOM05D003524 ORTHO05D003988 1.7e-35 152.5 101 74.3
CSS0001588 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 6.5e-35 150.6 100 72.0
ClCG05G016230 Citrullus lanatus HOM05D003524 ORTHO05D003988 6.5e-35 150.6 100 71.0
Nn8g39910 Nelumbo nucifera HOM05D003524 ORTHO05D003988 1.4e-34 149.4 101 73.3
Manes.03G008400 Manihot esculenta HOM05D003524 ORTHO05D003988 3.2e-34 148.3 101 72.3
TAR383G0003 Trochodendron aralioides HOM05D003524 ORTHO05D003988 4.2e-34 147.9 101 72.3
Actinidia22287 Actinidia chinensis HOM05D000091 ORTHO05D003988 9.3e-34 146.7 100 69.0
Gohir.D05G062000 Gossypium hirsutum HOM05D003524 ORTHO05D003988 9.3e-34 146.7 97 74.2
Gorai.009G063100 Gossypium raimondii HOM05D003524 ORTHO05D003988 9.3e-34 146.7 97 74.2
PSO339G2253 Papaver somniferum HOM05D003524 ORTHO05D003988 4.6e-33 144.4 104 70.2
Gohir.A05G059800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 1.3e-32 142.9 96 72.9
Oeu009646.1 Olea europaea HOM05D003524 ORTHO05D003988 1.3e-32 142.9 101 67.3
GSVIVG01035971001 Vitis vinifera HOM05D003524 ORTHO05D003988 1.8e-32 142.5 100 67.0
THA.LOC104803862 Tarenaya hassleriana HOM05D003524 ORTHO05D003988 2.3e-32 142.1 100 66.0
Lj5g0009668 Lotus japonicus HOM05D003524 ORTHO05D003988 3.9e-32 141.4 103 68.9
Eucgr.L02917 Eucalyptus grandis HOM05D003524 ORTHO05D003988 5.1e-32 141.0 99 68.7
Lj5g0020130 Lotus japonicus HOM05D003524 ORTHO05D003988 5.1e-32 141.0 103 68.9
PGR044G0872 Punica granatum HOM05D003524 ORTHO05D003988 5.1e-32 141.0 98 65.3
A01p06450 Brassica napus HOM05D003524 ORTHO05D003988 6.7e-32 140.6 101 67.3
C01p07090 Brassica napus HOM05D003524 ORTHO05D003988 6.7e-32 140.6 101 67.3
BraA01t00606Z Brassica rapa HOM05D003524 ORTHO05D003988 6.7e-32 140.6 101 67.3
CANSAT25G3000 Cannabis sativa HOM05D003524 ORTHO05D003988 8.7e-32 140.2 101 67.3
Cpa.g.sc127.42 Carica papaya HOM05D003524 ORTHO05D003988 8.7e-32 140.2 94 70.2
Aqoxy7G03391 Aquilegia oxysepala HOM05D003524 ORTHO05D003988 1.1e-31 139.8 99 67.7
BolC1t00701H Brassica oleracea HOM05D003524 ORTHO05D003988 1.1e-31 139.8 101 67.3
Sp7g29640 Schrenkiella parvula HOM05D003524 ORTHO05D003988 1.1e-31 139.8 101 66.3
Thhalv10026655m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 1.5e-31 139.4 101 66.3
RcHm_v2.0_Chr6g0299391 Rosa chinensis HOM05D003524 ORTHO05D003988 1.9e-31 139.0 97 69.1
SalBow4G2912 Salvia bowleyana HOM05D003524 ORTHO05D003988 2.5e-31 138.7 100 64.0
COL.COLO4_18953 Corchorus olitorius HOM05D003524 ORTHO05D003988 3.3e-31 138.3 97 67.0
Migut.A00356 Erythranthe guttata HOM05D003524 ORTHO05D003988 4.3e-31 137.9 101 63.4
SGA_v2.0_scaffold22G09905 Striga asiatica HOM05D003524 ORTHO05D003988 4.3e-31 137.9 101 64.4
BcaB03g12722 Brassica carinata HOM05D003524 ORTHO05D003988 5.7e-31 137.5 101 66.3
Eucgr.C02607 Eucalyptus grandis HOM05D003524 ORTHO05D003988 5.7e-31 137.5 99 67.7
Rhsim02G0212800 Rhododendron simsii HOM05D003524 ORTHO05D003988 9.7e-31 136.7 99 66.7
AT4G31830 Arabidopsis thaliana HOM05D003524 ORTHO05D003988 1.3e-30 136.3 101 65.3
BcaC01g01055 Brassica carinata HOM05D003524 ORTHO05D003988 1.3e-30 136.3 101 65.3
A08p18430 Brassica napus HOM05D003524 ORTHO05D003988 1.3e-30 136.3 101 65.3
C03p87500 Brassica napus HOM05D003524 ORTHO05D003988 1.3e-30 136.3 101 65.3
BolC3t21069H Brassica oleracea HOM05D003524 ORTHO05D003988 1.3e-30 136.3 101 65.3
CARHR239750 Cardamine hirsuta HOM05D003524 ORTHO05D003988 1.3e-30 136.3 101 65.3
AL7G20150 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 2.8e-30 135.2 101 64.4
BcaC09g51975 Brassica carinata HOM05D003524 ORTHO05D003988 3.7e-30 134.8 101 65.3
Cc08_g07120 Coffea canephora HOM05D003524 ORTHO05D003988 3.7e-30 134.8 101 65.3
Lj1g0009607 Lotus japonicus HOM05D003524 ORTHO05D003988 3.7e-30 134.8 104 66.3
Carub.0007s0872 Capsella rubella HOM05D003524 ORTHO05D003988 4.8e-30 134.4 101 64.4
Ca_13066_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 6.3e-30 134.0 104 63.5
Prupe.1G394000 Prunus persica HOM05D003524 ORTHO05D003988 8.2e-30 133.7 101 68.3
Aa31LG2G18400 Aethionema arabicum HOM05D003524 ORTHO05D003988 1.1e-29 133.3 101 64.4
Nitab4.5_0002011g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 1.4e-29 132.9 101 66.3
arahy.Tifrunner.gnm1.ann1.PTAL7S Arachis hypogaea HOM05D003524 ORTHO05D003988 2.4e-29 132.1 101 65.3
arahy.Tifrunner.gnm1.ann1.ZW8IXI Arachis hypogaea HOM05D003524 ORTHO05D003988 2.4e-29 132.1 101 65.3
FAN27G2394 Fragaria x ananassa HOM05D003524 ORTHO05D003988 3.1e-29 131.7 98 67.3
Cc08_g07080 Coffea canephora HOM05D003524 ORTHO05D003988 4.1e-29 131.3 101 64.4
Cc08_g07090 Coffea canephora HOM05D003524 ORTHO05D003988 4.1e-29 131.3 101 64.4
Lalb_Chr14g0361751 Lupinus albus HOM05D003524 ORTHO05D003988 4.1e-29 131.3 98 66.3
CAN.G353.11 Capsicum annuum HOM05D003524 ORTHO05D003988 5.3e-29 131.0 100 65.0
MD15G1040800 Malus domestica HOM05D003524 ORTHO05D003988 5.3e-29 131.0 101 64.4
Medtr1g014110 Medicago truncatula HOM05D003524 ORTHO05D003988 5.3e-29 131.0 104 64.4
Atru.chr7.2561 Acer truncatum HOM05D003524 ORTHO05D003988 6.9e-29 130.6 101 63.4
Peaxi162Scf00045g02028 Petunia axillaris HOM05D003524 ORTHO05D003988 9.0e-29 130.2 99 63.6
Solyc08g006800.3 Solanum lycopersicum HOM05D003524 ORTHO05D003988 1.5e-28 129.4 100 64.0
MD08G1056200 Malus domestica HOM05D003524 ORTHO05D003988 2.0e-28 129.0 101 61.4
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 2.6e-28 128.6 98 63.3
TPR.G38873 Trifolium pratense HOM05D003524 ORTHO05D003988 2.6e-28 128.6 100 65.0
Psat6g025880 Pisum sativum HOM05D003524 ORTHO05D003988 1.7e-27 125.9 102 59.8
EL10Ac2g02500 Beta vulgaris HOM05D003524 ORTHO05D003988 2.2e-27 125.6 103 66.0
FAN20G2483 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.9e-27 125.2 98 64.3
BraA08t33803Z Brassica rapa HOM05D003524 ORTHO05D003988 8.5e-27 123.6 93 63.4
ECA232G2703 Erigeron canadensis HOM05D003524 ORTHO05D003988 8.5e-27 123.6 98 60.2
HanXRQChr09g0274741 Helianthus annuus HOM05D003524 ORTHO05D003988 1.1e-26 123.2 98 61.2
BcaNung03115 Brassica carinata HOM05D003524 ORTHO05D003988 1.4e-26 122.9 101 62.4
DCAR_022861 Daucus carota HOM05D003524 ORTHO05D003988 5.5e-26 120.9 89 67.4
unitig_748.g7378 Utricularia gibba HOM05D003524 ORTHO05D003988 5.5e-26 120.9 100 60.0
Ah.12g060790 Amaranthus hybridus HOM05D003524 ORTHO05D003988 7.2e-26 120.6 101 63.4
PGSC0003DMG400026298 Solanum tuberosum HOM05D003524 ORTHO05D003988 9.4e-26 120.2 91 64.8
Potri.018G018300 Populus trichocarpa HOM05D003524 ORTHO05D003988 3.6e-25 118.2 94 63.8
AUR62024806 Chenopodium quinoa HOM05D003524 ORTHO05D003988 4.6e-25 117.9 99 63.6
Manes.16G130000 Manihot esculenta HOM05D003524 ORTHO05D003988 2.3e-24 115.5 89 64.0
Sopen08g002750 Solanum pennellii HOM05D003524 ORTHO05D003988 1.1e-23 113.2 91 61.5
Duzib168G0976 Durio zibethinus HOM05D003524 ORTHO05D003988 2.0e-23 112.5 97 61.9
Sed0019715 Sechium edule HOM05D003524 ORTHO05D003988 4.3e-23 111.3 98 61.2
Glyma.17G223300 Glycine max HOM05D003524 ORTHO05D003988 4.1e-21 104.8 98 53.1
unitig_32.g11664 Utricularia gibba HOM05D006934 ORTHO05D008743 4.1e-21 104.8 85 56.5
Phvul.001G041500 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 9.1e-21 103.6 87 59.8
FAN15G0945 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.2e-20 103.2 79 63.3
Sc08g0005190 Simmondsia chinensis HOM05D003524 ORTHO05D003988 1.2e-20 103.2 80 65.0
Sc08g0005200 Simmondsia chinensis HOM05D003524 ORTHO05D003988 1.2e-20 103.2 80 65.0
Haze_19201 Corylus avellana HOM05D003524 ORTHO05D003988 2.6e-20 102.1 83 63.9
Glyma.14G101900 Glycine max HOM05D003524 ORTHO05D003988 7.7e-20 100.5 82 59.8
Cfa020822 Carpinus fangiana HOM05D003524 ORTHO05D003988 1.3e-19 99.8 83 61.4
CiPaw.03G202100 Carya illinoinensis HOM05D003524 ORTHO05D003988 1.7e-19 99.4 85 61.2
Os09g0127700 Oryza sativa ssp. japonica HOM05D003524 ORTHO05D003988 1.7e-19 99.4 93 52.7
TAR625G1231 Trochodendron aralioides HOM05D003524 ORTHO05D003988 1.7e-19 99.4 101 57.4
Zm00001eb095580 Zea mays HOM05D003524 ORTHO05D003988 1.1e-18 96.7 93 52.7
BcaC01g01054 Brassica carinata HOM05D003524 ORTHO05D003988 9.4e-18 93.6 72 62.5
SHI21076 Sapria himalayana HOM05D003524 ORTHO05D003988 2.7e-17 92.0 77 61.0
Prupe.7G263500 Prunus persica HOM05D003524 ORTHO05D003988 6.1e-17 90.9 86 58.1
ClCG06G012430 Citrullus lanatus HOM05D003524 ORTHO05D003988 2.3e-16 89.0 77 61.0
MBI15_g18244_MAGBIO Magnolia biondii HOM05D003524 ORTHO05D003988 3.0e-16 88.6 83 54.2
vmacro06076 Vaccinium macrocarpon HOM05D003524 ORTHO05D003988 3.0e-16 88.6 89 56.2
MELO3C010217.2 Cucumis melo HOM05D003524 ORTHO05D003988 4.4e-15 84.7 81 54.3
MSTRG.6141 Avicennia marina HOM05D003524 ORTHO05D003988 1.3e-14 83.2 72 58.3
Psat0s2403g0200 Pisum sativum HOM05D003524 ORTHO05D003988 1.3e-14 83.2 75 56.0
QL02p093340 Quercus lobata HOM05D003524 ORTHO05D003988 1.7e-14 82.8 74 59.5
Lalb_Chr08g0234291 Lupinus albus HOM05D003524 ORTHO05D003988 3.7e-14 81.6 85 49.4
CSS0041430 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 4.8e-14 81.3 84 56.0
Dinv42850 Davidia involucrata HOM05D003524 ORTHO05D003988 4.8e-14 81.3 77 58.4
Dinv43250 Davidia involucrata HOM05D003524 ORTHO05D003988 4.8e-14 81.3 77 58.4
Lalb_Chr11g0072661 Lupinus albus HOM05D003524 ORTHO05D003988 1.1e-13 80.1 75 54.7
Sopen07g001680 Solanum pennellii HOM05D003524 ORTHO05D003988 1.1e-13 80.1 69 59.4
Cc06_g14890 Coffea canephora HOM05D003524 ORTHO05D003988 3.1e-13 78.6 70 55.7
Migut.K00320 Erythranthe guttata HOM05D003524 ORTHO05D003988 3.1e-13 78.6 67 58.2
MD15G1144300 Malus domestica HOM05D003524 ORTHO05D003988 3.1e-13 78.6 69 56.5
Medtr4g130810 Medicago truncatula HOM05D003524 ORTHO05D003988 4.1e-13 78.2 70 55.7
Hma1.2p1_0028F.1_g017600 Hydrangea macrophylla HOM05D003524 ORTHO05D003988 5.3e-13 77.8 63 60.3
Potri.006G183800 Populus trichocarpa HOM05D003524 ORTHO05D003988 7.0e-13 77.4 67 58.2
Ca_21130_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 9.1e-13 77.0 70 54.3
Ca_28168_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 9.1e-13 77.0 70 54.3
AUR62029823 Chenopodium quinoa HOM05D003524 ORTHO05D003988 1.6e-12 76.3 63 60.3
Oeu021302.1 Olea europaea HOM05D003524 ORTHO05D003988 2.0e-12 75.9 85 49.4
TPR.G24858 Trifolium pratense HOM05D003524 ORTHO05D003988 2.0e-12 75.9 70 54.3
SalBow1G7165 Salvia bowleyana HOM05D003524 ORTHO05D003988 2.6e-12 75.5 67 58.2
EL10Ac4g10348 Beta vulgaris HOM05D003524 ORTHO05D003988 3.5e-12 75.1 72 56.9
Thecc.09G029400 Theobroma cacao HOM05D003524 ORTHO05D003988 3.5e-12 75.1 65 60.0
Sed0002480 Sechium edule HOM05D003524 ORTHO05D003988 4.5e-12 74.7 69 55.1
arahy.Tifrunner.gnm1.ann1.36ASSY Arachis hypogaea HOM05D003524 ORTHO05D003988 5.9e-12 74.3 66 56.1
arahy.Tifrunner.gnm1.ann1.YXTM1W Arachis hypogaea HOM05D003524 ORTHO05D003988 5.9e-12 74.3 66 56.1
FAN23G1251 Fragaria x ananassa HOM05D003524 ORTHO05D003988 5.9e-12 74.3 86 47.7
FAN26G0389 Fragaria x ananassa HOM05D003524 ORTHO05D003988 5.9e-12 74.3 86 47.7
FAN28G2066 Fragaria x ananassa HOM05D003524 ORTHO05D003988 5.9e-12 74.3 86 47.7
Rhsim03G0257300 Rhododendron simsii HOM05D000122 ORTHO05D000139 5.9e-12 74.3 69 56.5
Glyma.02G204400 Glycine max HOM05D003524 ORTHO05D003988 1.0e-11 73.6 69 53.6
Gohir.D05G054800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 1.0e-11 73.6 65 60.0
Phvul.003G155700 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 1.0e-11 73.6 67 55.2
COL.COLO4_18813 Corchorus olitorius HOM05D003524 ORTHO05D003988 1.7e-11 72.8 65 56.9
PGSC0003DMG401011138 Solanum tuberosum HOM05D003524 ORTHO05D003988 1.7e-11 72.8 69 55.1
Cpa.g.sc46.161 Carica papaya HOM05D000332 ORTHO05D000268 2.2e-11 72.4 67 55.2
Ciclev10010389m.g Citrus clementina HOM05D003524 ORTHO05D003988 5.0e-11 71.2 67 58.2
Potri.018G106300 Populus trichocarpa HOM05D003524 ORTHO05D003988 5.0e-11 71.2 67 53.7
AUR62032414 Chenopodium quinoa HOM05D003524 ORTHO05D003988 6.5e-11 70.9 98 43.9
Sabra06G0139800 Salix brachista HOM05D003524 ORTHO05D003988 6.5e-11 70.9 65 56.9
SGA_v2.0_scaffold12G06006 Striga asiatica HOM05D003524 ORTHO05D003988 6.5e-11 70.9 82 50.0
Prupe.1G394100 Prunus persica HOM05D003524 ORTHO05D003988 8.5e-11 70.5 90 47.8
ECA240G1327 Erigeron canadensis HOM05D003524 ORTHO05D003988 3.2e-10 68.6 64 56.2
Cpa.g.sc136.44 Carica papaya HOM05D003524 ORTHO05D003988 4.2e-10 68.2 63 57.1
Nn7g38002 Nelumbo nucifera HOM05D003524 ORTHO05D003988 4.2e-10 68.2 89 47.2
Atru.chr7.178 Acer truncatum HOM05D003524 ORTHO05D003988 9.4e-10 67.0 63 55.6
Nitab4.5_0006523g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 1.2e-09 66.6 81 49.4
Eucgr.C00343 Eucalyptus grandis HOM05D003524 ORTHO05D003988 2.7e-09 65.5 64 54.7
Nn2g14054 Nelumbo nucifera HOM05D003524 ORTHO05D003988 2.7e-09 65.5 80 46.2
Nn2g14056 Nelumbo nucifera HOM05D003524 ORTHO05D003988 2.7e-09 65.5 80 46.2
Lsat_1_v5_gn_7_49941 Lactuca sativa HOM05D003524 ORTHO05D003988 3.6e-09 65.1 64 53.1
Gohir.A05G053200 Gossypium hirsutum HOM05D003524 ORTHO05D003988 8.0e-09 63.9 46 65.2
Gorai.009G056500 Gossypium raimondii HOM05D003524 ORTHO05D003988 1.8e-08 62.8 46 65.2
AagrBONN_evm.TU.Sc2ySwM_368.420 Anthoceros agrestis HOM05D003524 ORTHO05D003988 3.0e-08 62.0 45 62.2
Mapoly0006s0148 Marchantia polymorpha HOM05D003524 ORTHO05D003988 3.0e-08 62.0 79 41.8
HPP92_010736 Vanilla planifolia HOM05D003524 ORTHO05D003988 4.0e-08 61.6 63 49.2
Nn2g12399 Nelumbo nucifera HOM05D003524 ORTHO05D003988 1.5e-07 59.7 48 60.4
Nitab4.5_0002011g0090 Nicotiana tabacum HOM05D003524 ORTHO05D003988 1.5e-07 59.7 60 43.3
Nitab4.5_0003563g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 5.7e-07 57.8 62 41.9
Nitab4.5_0002947g0020 Nicotiana tabacum HOM05D003524 ORTHO05D003988 1.3e-06 56.6 47 61.7
DCAR_019373 Daucus carota HOM05D003524 ORTHO05D003988 3.7e-06 55.1 67 44.8
A03p29240 Brassica napus HOM05D003524 ORTHO05D003988 8.2e-06 53.9 64 53.1
BraA03t12119Z Brassica rapa HOM05D003524 ORTHO05D003988 8.2e-06 53.9 64 53.1


User provided reference genes

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