Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G218200 Carya illinoinensis HOM05D005141 ORTHO05D006250 5.5e-248 860.5 436 100.0
CiPaw.08G014900 Carya illinoinensis HOM05D005141 ORTHO05D006250 3.6e-191 671.8 437 80.1
Cfa021484 Carpinus fangiana HOM05D005141 ORTHO05D006250 7.0e-187 657.5 416 82.2
Haze_21614 Corylus avellana HOM05D005141 ORTHO05D006250 6.8e-182 641.0 442 77.1
QL12p031441 Quercus lobata HOM05D005141 ORTHO05D006250 2.0e-165 586.3 450 71.8
Prupe.1G467500 Prunus persica HOM05D005141 ORTHO05D006250 3.0e-153 545.8 442 67.2
RcHm_v2.0_Chr6g0312851 Rosa chinensis HOM05D005141 ORTHO05D006250 2.5e-152 542.7 444 66.4
FAN27G2430 Fragaria x ananassa HOM05D005141 ORTHO05D006250 7.9e-146 521.2 444 65.3
FAN15G0409 Fragaria x ananassa HOM05D005141 ORTHO05D006250 1.8e-145 520.0 444 64.9
FAN20G1096 Fragaria x ananassa HOM05D005141 ORTHO05D006250 1.5e-144 516.9 444 64.9
MD15G1116100 Malus domestica HOM05D005141 ORTHO05D006250 1.9e-144 516.5 455 64.4
FAN24G3348 Fragaria x ananassa HOM05D005141 ORTHO05D006250 2.1e-143 513.1 444 64.4
MD08G1137500 Malus domestica HOM05D005141 ORTHO05D006250 2.6e-141 506.1 452 64.4
Potri.018G033700 Populus trichocarpa HOM05D005141 ORTHO05D006250 4.3e-136 488.8 403 66.5
GSVIVG01035797001 Vitis vinifera HOM05D005141 ORTHO05D006250 6.9e-134 481.5 450 60.0
Sabra18G0034600 Salix brachista HOM05D005141 ORTHO05D006250 1.9e-131 473.4 401 65.3
Manes.16G067800 Manihot esculenta HOM05D005141 ORTHO05D006250 4.2e-131 472.2 443 62.5
Dinv30204 Davidia involucrata HOM05D005141 ORTHO05D006250 2.7e-130 469.5 425 60.7
Manes.03G065500 Manihot esculenta HOM05D005141 ORTHO05D006250 1.0e-129 467.6 409 64.8
Ciclev10008356m.g Citrus clementina HOM05D005141 ORTHO05D006250 1.4e-123 447.2 439 59.9
Sabra06G0193700 Salix brachista HOM05D005141 ORTHO05D006250 4.2e-123 445.7 412 61.9
CANSAT25G3062 Cannabis sativa HOM05D005141 ORTHO05D006250 9.4e-123 444.5 449 59.0
TWI32G0021 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 3.0e-121 439.5 452 56.6
Thecc.09G145300 Theobroma cacao HOM05D005141 ORTHO05D006250 9.7e-120 434.5 451 57.6
Atru.chr7.2334 Acer truncatum HOM05D005141 ORTHO05D006250 1.3e-119 434.1 418 60.3
Eucgr.C01809 Eucalyptus grandis HOM05D005141 ORTHO05D006250 1.4e-115 420.6 410 56.6
Hma1.2p1_0175F.1_g077130 Hydrangea macrophylla HOM05D005141 ORTHO05D006250 1.4e-113 414.1 423 57.0
Phvul.009G097300 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 2.6e-112 409.8 436 54.1
VMungo1309G3073 Vigna mungo HOM05D005141 ORTHO05D006250 4.4e-112 409.1 435 53.6
TAR383G0458 Trochodendron aralioides HOM05D005141 ORTHO05D006250 1.7e-111 407.1 449 55.9
Glyma.04G071400 Glycine max HOM05D005141 ORTHO05D006250 2.2e-111 406.8 437 53.5
Glyma.06G072700 Glycine max HOM05D005141 ORTHO05D006250 2.8e-111 406.4 436 53.9
Ca_15703_v3 Cicer arietinum L. HOM05D005141 ORTHO05D006250 1.1e-110 404.4 440 53.2
TWI34G0135 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 1.1e-110 404.4 345 63.2
TAR626G1320 Trochodendron aralioides HOM05D005141 ORTHO05D006250 2.4e-110 403.3 427 56.4
TPR.G34685 Trifolium pratense HOM05D005141 ORTHO05D006250 3.1e-110 402.9 404 56.4
FvH4_2g30050 Fragaria vesca HOM05D005141 ORTHO05D006250 5.3e-110 402.1 338 66.3
Duzib187G0541 Durio zibethinus HOM05D005141 ORTHO05D006250 9.1e-110 401.4 449 53.5
Potri.006G247500 Populus trichocarpa HOM05D005141 ORTHO05D006250 9.1e-110 401.4 299 71.2
Lalb_Chr23g0268881 Lupinus albus HOM05D005141 ORTHO05D006250 5.9e-109 398.7 406 53.9
Medtr3g107950 Medicago truncatula HOM05D005141 ORTHO05D006250 5.0e-108 395.6 399 56.1
PGSC0003DMG400026089 Solanum tuberosum HOM05D005141 ORTHO05D006250 8.5e-108 394.8 428 54.9
Nn2g11855 Nelumbo nucifera HOM05D005141 ORTHO05D006250 2.5e-107 393.3 455 53.0
Duzib168G0094 Durio zibethinus HOM05D005141 ORTHO05D006250 5.5e-107 392.1 448 53.8
Duzib150G1154 Durio zibethinus HOM05D005141 ORTHO05D006250 9.4e-107 391.3 486 50.8
Gorai.009G011200 Gossypium raimondii HOM05D005141 ORTHO05D006250 9.4e-107 391.3 446 52.9
Actinidia13429 Actinidia chinensis HOM05D005141 ORTHO05D006250 2.7e-106 389.8 408 54.9
CAN.G199.28 Capsicum annuum HOM05D005141 ORTHO05D006250 3.6e-106 389.4 407 56.5
Lj1g0018494 Lotus japonicus HOM05D005141 ORTHO05D006250 6.1e-106 388.7 420 53.6
Solyc06g065650.3 Solanum lycopersicum HOM05D005141 ORTHO05D006250 2.0e-104 383.6 432 53.5
vmacro11124 Vaccinium macrocarpon HOM05D005141 ORTHO05D006250 7.4e-104 381.7 477 49.1
Sopen06g024010 Solanum pennellii HOM05D005141 ORTHO05D006250 9.7e-104 381.3 432 53.2
arahy.Tifrunner.gnm1.ann1.WUI646 Arachis hypogaea HOM05D005141 ORTHO05D006250 2.8e-103 379.8 377 56.2
Nitab4.5_0011669g0010 Nicotiana tabacum HOM05D005141 ORTHO05D006250 6.3e-103 378.6 439 50.8
Lj7A714G44 Lonicera japonica HOM05D005141 ORTHO05D006250 1.8e-102 377.1 353 58.6
TAR636G0300 Trochodendron aralioides HOM05D005141 ORTHO05D006250 2.4e-102 376.7 453 53.6
Nitab4.5_0005873g0030 Nicotiana tabacum HOM05D005141 ORTHO05D006250 1.2e-101 374.4 441 51.9
ClCG08G012940 Citrullus lanatus HOM05D005141 ORTHO05D006250 1.7e-100 370.5 452 52.9
Sed0000645 Sechium edule HOM05D005141 ORTHO05D006250 2.7e-98 363.2 450 50.7
Peaxi162Scf00545g00034 Petunia axillaris HOM05D005141 ORTHO05D006250 8.0e-98 361.7 454 50.2
Cpa.g.sc91.20 Carica papaya HOM05D005141 ORTHO05D006250 5.2e-97 359.0 317 61.8
arahy.Tifrunner.gnm1.ann1.29TRSQ Arachis hypogaea HOM05D005141 ORTHO05D006250 1.5e-96 357.5 411 50.9
Cc08_g08010 Coffea canephora HOM05D005141 ORTHO05D006250 3.7e-95 352.8 440 49.3
Gohir.A05G010100 Gossypium hirsutum HOM05D005141 ORTHO05D006250 1.6e-93 347.4 445 48.5
Lalb_Chr08g0243831 Lupinus albus HOM05D005141 ORTHO05D006250 1.6e-93 347.4 416 50.0
MELO3C011217.2 Cucumis melo HOM05D005141 ORTHO05D006250 1.2e-90 337.8 478 47.7
Gohir.D05G010800 Gossypium hirsutum HOM05D005141 ORTHO05D006250 1.6e-90 337.4 445 48.3
DCAR_022871 Daucus carota HOM05D005141 ORTHO05D006250 2.1e-90 337.0 434 48.2
Rhsim02G0188600 Rhododendron simsii HOM05D005141 ORTHO05D006250 1.0e-89 334.7 646 37.3
COL.COLO4_24046 Corchorus olitorius HOM05D005141 ORTHO05D006250 3.1e-86 323.2 288 60.8
Actinidia13280 Actinidia chinensis HOM05D005141 ORTHO05D006250 7.0e-86 322.0 290 60.7
PSO782G1260 Papaver somniferum HOM05D005141 ORTHO05D006250 2.7e-85 320.1 439 47.2
Nn8g39307 Nelumbo nucifera HOM05D005141 ORTHO05D006250 1.1e-83 314.7 307 56.7
MBI04_g39529_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 2.1e-82 310.5 409 47.4
Dinv11587 Davidia involucrata HOM05D005141 ORTHO05D006250 2.8e-82 310.1 262 64.9
ECA233G0036 Erigeron canadensis HOM05D005141 ORTHO05D006250 4.7e-82 309.3 403 50.4
SalBow4G0713 Salvia bowleyana HOM05D005141 ORTHO05D006250 1.0e-81 308.1 375 49.9
MSTRG.25868 Avicennia marina HOM05D005141 ORTHO05D006250 2.2e-79 300.4 362 51.4
ClCG05G017130 Citrullus lanatus HOM05D005141 ORTHO05D006250 1.8e-78 297.4 422 46.7
Sed0008448 Sechium edule HOM05D005141 ORTHO05D006250 3.2e-78 296.6 414 47.3
PGR031G2456 Punica granatum HOM05D005141 ORTHO05D006250 7.0e-78 295.4 440 43.4
HanXRQChr02g0050641 Helianthus annuus HOM05D005141 ORTHO05D006250 1.6e-77 294.3 364 50.8
MELO3C003675.2 Cucumis melo HOM05D005141 ORTHO05D006250 2.3e-73 280.4 428 44.9
CsaV3_3G046630 Cucumis sativus L. HOM05D005141 ORTHO05D006250 8.9e-73 278.5 340 51.2
Psat0s1782g0240 Pisum sativum HOM05D005141 ORTHO05D006250 1.5e-72 277.7 313 51.8
Migut.A00282 Erythranthe guttata HOM05D005141 ORTHO05D006250 2.0e-72 277.3 399 46.6
Lsat_1_v5_gn_1_43100 Lactuca sativa HOM05D005141 ORTHO05D006250 9.8e-72 275.0 418 46.7
MBI01_g37337_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 1.7e-71 274.2 312 49.7
PSO063G0687 Papaver somniferum HOM05D005141 ORTHO05D006250 6.4e-71 272.3 438 43.6
Oeu014659.3 Olea europaea HOM05D005141 ORTHO05D006250 7.0e-70 268.9 383 45.7
Oeu032487.3 Olea europaea HOM05D005141 ORTHO05D006250 1.2e-69 268.1 326 51.2
Phvul.001G055100 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 3.5e-69 266.5 348 48.0
EL10Ac2g02550 Beta vulgaris HOM05D005141 ORTHO05D006250 3.3e-67 260.0 359 48.5
Lsat_1_v5_gn_6_22941 Lactuca sativa HOM05D005141 ORTHO05D006250 1.1e-62 245.0 383 46.2
HanXRQChr13g0402161 Helianthus annuus HOM05D005141 ORTHO05D006250 5.1e-60 236.1 355 44.8
AUR62024850 Chenopodium quinoa HOM05D005141 ORTHO05D006250 1.2e-58 231.5 334 45.5
CsaV3_2G031660 Cucumis sativus L. HOM05D005141 ORTHO05D006250 2.6e-56 223.8 272 53.3
THA.LOC104803820 Tarenaya hassleriana HOM05D005141 ORTHO05D006250 5.8e-56 222.6 431 42.0
SGA_v2.0_scaffold27G11478 Striga asiatica HOM05D005141 ORTHO05D006250 3.7e-55 219.9 373 41.6
ATR0083G007 Amborella trichopoda HOM05D005141 ORTHO05D006250 2.3e-52 210.7 319 42.0
AL7G19190 Arabidopsis lyrata HOM05D005141 ORTHO05D006250 1.8e-49 201.1 377 40.8
Sp7g30350 Schrenkiella parvula HOM05D005141 ORTHO05D006250 1.2e-48 198.4 430 37.4
Carub.0007s0798 Capsella rubella HOM05D005141 ORTHO05D006250 5.8e-48 196.1 452 37.4
AT4G32570 Arabidopsis thaliana HOM05D005141 ORTHO05D006250 1.9e-46 191.0 441 36.7
Thhalv10025562m.g Eutrema salsugineum HOM05D005141 ORTHO05D006250 2.4e-46 190.7 431 37.6
C03p87260 Brassica napus HOM05D005141 ORTHO05D006250 2.1e-45 187.6 435 37.7
BolC3t21027H Brassica oleracea HOM05D005141 ORTHO05D006250 6.0e-45 186.0 435 37.5
BcaC01g01013 Brassica carinata HOM05D005141 ORTHO05D006250 7.8e-45 185.7 387 39.0
BraA08t33764Z Brassica rapa HOM05D005141 ORTHO05D006250 7.8e-45 185.7 438 37.0
A08p18120 Brassica napus HOM05D005141 ORTHO05D006250 3.0e-44 183.7 439 36.9
Glyma.17G205200 Glycine max HOM05D005141 ORTHO05D006250 1.1e-43 181.8 193 53.4
BraA01t00550Z Brassica rapa HOM05D005141 ORTHO05D006250 1.5e-43 181.4 407 37.3
BcaB03g12752 Brassica carinata HOM05D005141 ORTHO05D006250 2.5e-43 180.6 425 36.9
Aqoxy7G01897 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 1.6e-42 177.9 313 40.9
A01p05810 Brassica napus HOM05D005141 ORTHO05D006250 4.8e-42 176.4 325 40.0
C01p06380 Brassica napus HOM05D005141 ORTHO05D006250 3.4e-40 170.2 425 36.5
BolC1t00634H Brassica oleracea HOM05D005141 ORTHO05D006250 1.7e-39 167.9 342 38.9
Aa31LG4G11720 Aethionema arabicum HOM05D005141 ORTHO05D006250 2.4e-38 164.1 362 36.2
HPP92_009098 Vanilla planifolia HOM05D005141 ORTHO05D006250 9.3e-38 162.2 325 40.3
BcaC09g52048 Brassica carinata HOM05D005141 ORTHO05D006250 2.3e-36 157.5 434 35.5
SHI18604 Sapria himalayana HOM05D005141 ORTHO05D006250 2.5e-35 154.1 294 39.8
unitig_37.g12225 Utricularia gibba HOM05D005141 ORTHO05D006250 3.4e-32 143.7 354 33.9
SEGI_18535 Sequoiadendron giganteum HOM05D005141 ORTHO05D006250 1.9e-27 127.9 294 36.1
CSS0000568 Camellia sinensis var. sinensis HOM05D005141 ORTHO05D006250 2.1e-26 124.4 124 57.3
unitig_46.g18533 Utricularia gibba HOM05D005141 ORTHO05D006250 2.0e-24 117.9 162 46.9
Ah.10g025860 Amaranthus hybridus HOM05D005141 ORTHO05D006250 2.6e-24 117.5 214 40.7
AagrBONN_evm.TU.Sc2ySwM_117.408 Anthoceros agrestis HOM05D005141 ORTHO05D006250 2.7e-21 107.5 344 32.6
Pp3c22_12420 Physcomitrium patens HOM05D005141 ORTHO05D006250 3.9e-20 103.6 295 31.5
Pp3c19_8700 Physcomitrium patens HOM05D005141 ORTHO05D006250 6.7e-20 102.8 300 32.3
Aqoxy81s001 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 2.8e-18 97.4 132 46.2
Mapoly0079s0053 Marchantia polymorpha HOM05D005141 ORTHO05D006250 6.3e-18 96.3 360 32.2
SMO143G0273 Selaginella moellendorffii HOM05D005141 ORTHO05D006250 1.4e-17 95.1 249 34.1
C06p25010 Brassica napus HOM05D000698 ORTHO05D006250 3.1e-17 94.0 192 37.0
Haze_10527 Corylus avellana HOM05D005141 ORTHO05D006250 5.9e-16 89.7 79 58.2
BcaC08g44885 Brassica carinata HOM05D005141 ORTHO05D006250 7.6e-16 89.4 175 36.6
A06p26660 Brassica napus HOM05D005141 ORTHO05D006250 1.3e-15 88.6 176 36.9
Cpa.g.sc91.24 Carica papaya HOM05D005141 ORTHO05D006250 1.4e-14 85.1 103 49.5
C07p35200 Brassica napus HOM05D005141 ORTHO05D006250 5.3e-09 66.6 107 42.1
BolC7t44052H Brassica oleracea HOM05D005141 ORTHO05D006250 5.3e-09 66.6 107 42.1
BolC9t58511H Brassica oleracea HOM05D005141 ORTHO05D006250 2.6e-08 64.3 60 56.7
CSS0012514 Camellia sinensis var. sinensis HOM05D002346 ORTHO05D002452 5.0e-07 60.1 125 36.8
CSS0022053 Camellia sinensis var. sinensis HOM05D002346 ORTHO05D002452 5.0e-07 60.1 125 36.8
Lj7C714T1 Lonicera japonica HOM05D005141 ORTHO05D030953 9.4e-06 55.8 90 44.4


User provided reference genes

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