Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G217500 Carya illinoinensis HOM05D003461 ORTHO05D004386 0.0e+00 1487.6 737 100.0
Haze_21625 Corylus avellana HOM05D003461 ORTHO05D004386 0.0e+00 1089.7 723 76.1
Cfa013213 Carpinus fangiana HOM05D003461 ORTHO05D004386 6.2e-268 927.5 636 74.7
QL12p031223 Quercus lobata HOM05D003461 ORTHO05D004386 6.2e-268 927.5 636 74.1
Prupe.1G466400 Prunus persica HOM05D003461 ORTHO05D004386 1.4e-256 889.8 737 63.6
RcHm_v2.0_Chr6g0312731 Rosa chinensis HOM05D003461 ORTHO05D004386 7.3e-253 877.5 737 63.0
Atru.chr7.2323 Acer truncatum HOM05D003461 ORTHO05D004386 1.5e-250 869.8 746 62.2
FAN27G2808 Fragaria x ananassa HOM05D003461 ORTHO05D004386 9.2e-248 860.5 733 61.8
FvH4_2g30180 Fragaria vesca HOM05D003461 ORTHO05D004386 2.1e-247 859.4 731 61.6
FAN15G0070 Fragaria x ananassa HOM05D003461 ORTHO05D004386 1.1e-243 847.0 733 61.4
MD08G1135800 Malus domestica HOM05D003461 ORTHO05D004386 1.4e-243 846.7 733 60.8
MD15G1115000 Malus domestica HOM05D003461 ORTHO05D004386 2.6e-242 842.4 746 60.5
FAN20G1067 Fragaria x ananassa HOM05D003461 ORTHO05D004386 3.2e-240 835.5 731 60.5
TWI34G1710 Tripterygium wilfordii HOM05D003461 ORTHO05D004386 1.3e-238 830.1 747 60.0
Potri.018G034700 Populus trichocarpa HOM05D003461 ORTHO05D004386 2.3e-238 829.3 743 59.5
TAR383G0906 Trochodendron aralioides HOM05D003461 ORTHO05D004386 2.4e-235 819.3 801 57.2
FAN24G1347 Fragaria x ananassa HOM05D003461 ORTHO05D004386 3.4e-234 815.5 727 59.4
COL.COLO4_24068 Corchorus olitorius HOM05D003461 ORTHO05D004386 7.4e-229 797.7 744 57.4
Ciclev10007226m.g Citrus clementina HOM05D003461 ORTHO05D004386 1.3e-228 797.0 724 59.1
CANSAT01G0438 Cannabis sativa HOM05D003461 ORTHO05D004386 2.8e-228 795.8 733 59.3
Duzib150G1527 Durio zibethinus HOM05D003461 ORTHO05D004386 2.6e-226 789.3 738 57.9
Dinv35880 Davidia involucrata HOM05D003461 ORTHO05D004386 3.4e-226 788.9 754 57.7
Thecc.09G143900 Theobroma cacao HOM05D003461 ORTHO05D004386 4.5e-226 788.5 745 56.8
GSVIVG01035727001 Vitis vinifera HOM05D003461 ORTHO05D004386 3.8e-225 785.4 748 56.4
Duzib168G0147 Durio zibethinus HOM05D003461 ORTHO05D004386 1.4e-224 783.5 745 56.5
Gohir.A05G010700 Gossypium hirsutum HOM05D003461 ORTHO05D004386 1.2e-223 780.4 739 56.4
PGR044G2079 Punica granatum HOM05D003461 ORTHO05D004386 1.6e-223 780.0 729 57.3
Gorai.009G011800 Gossypium raimondii HOM05D003461 ORTHO05D004386 7.9e-223 777.7 741 55.9
CSS0003133 Camellia sinensis var. sinensis HOM05D003461 ORTHO05D004386 1.3e-222 776.9 772 54.5
Gorai.010G053900 Gossypium raimondii HOM05D003461 ORTHO05D004386 6.5e-217 758.1 742 55.0
Gohir.D06G048151 Gossypium hirsutum HOM05D003461 ORTHO05D004386 8.4e-217 757.7 742 55.0
Glyma.14G129500 Glycine max HOM05D003461 ORTHO05D004386 1.9e-213 746.5 744 54.8
Gohir.A06G048100 Gossypium hirsutum HOM05D003461 ORTHO05D004386 1.9e-213 746.5 741 54.3
Rhsim07G0154200 Rhododendron simsii HOM05D003461 ORTHO05D004386 7.4e-213 744.6 762 54.5
Sabra18G0035500 Salix brachista HOM05D003461 ORTHO05D004386 4.1e-211 738.8 744 54.6
DCAR_006261 Daucus carota HOM05D003461 ORTHO05D004386 4.6e-207 725.3 783 52.1
Lj5g0000879 Lotus japonicus HOM05D003461 ORTHO05D004386 1.4e-206 723.8 744 53.5
VMungo0647G1896 Vigna mungo HOM05D003461 ORTHO05D004386 1.5e-205 720.3 742 53.6
Phvul.001G055800 Phaseolus vulgaris HOM05D003461 ORTHO05D004386 2.8e-204 716.1 743 53.7
Eucgr.C02859 Eucalyptus grandis HOM05D003461 ORTHO05D004386 3.7e-204 715.7 739 54.9
Nn2g11834 Nelumbo nucifera HOM05D003461 ORTHO05D004386 1.1e-200 704.1 805 50.3
Sp4g05280 Schrenkiella parvula HOM05D003461 ORTHO05D004386 1.1e-200 704.1 748 52.7
Glyma.17G204000 Glycine max HOM05D003461 ORTHO05D004386 1.0e-198 697.6 749 53.1
Nitab4.5_0009600g0020 Nicotiana tabacum HOM05D003461 ORTHO05D004386 2.8e-196 689.5 790 49.0
Nitab4.5_0000125g0120 Nicotiana tabacum HOM05D003461 ORTHO05D004386 3.7e-196 689.1 789 48.3
THA.LOC104819890 Tarenaya hassleriana HOM05D003461 ORTHO05D004386 3.7e-196 689.1 730 52.2
Aa31sc76G80 Aethionema arabicum HOM05D003461 ORTHO05D004386 1.1e-195 687.6 739 51.2
Lalb_Chr11g0063991 Lupinus albus HOM05D003461 ORTHO05D004386 7.0e-195 684.9 735 52.7
Dinv30215 Davidia involucrata HOM05D003461 ORTHO05D004386 3.5e-194 682.6 670 56.1
Thhalv10000008m.g Eutrema salsugineum HOM05D003461 ORTHO05D004386 3.5e-194 682.6 738 51.8
Gohir.D05G011400 Gossypium hirsutum HOM05D003461 ORTHO05D004386 6.5e-193 678.3 621 57.8
AL4G17260 Arabidopsis lyrata HOM05D003461 ORTHO05D004386 8.5e-193 677.9 737 51.3
Sopen08g021790 Solanum pennellii HOM05D003461 ORTHO05D004386 1.6e-191 673.7 789 48.4
SGA_v2.0_scaffold27G11498 Striga asiatica HOM05D003461 ORTHO05D004386 1.8e-190 670.2 752 49.9
arahy.Tifrunner.gnm1.ann1.4R6GA4 Arachis hypogaea HOM05D003461 ORTHO05D004386 5.2e-190 668.7 742 51.2
Solyc08g067870.2 Solanum lycopersicum HOM05D003461 ORTHO05D004386 6.7e-190 668.3 790 48.2
EL10Ac2g02534 Beta vulgaris HOM05D003461 ORTHO05D004386 5.7e-189 665.2 773 50.2
Migut.A00272 Erythranthe guttata HOM05D003461 ORTHO05D004386 5.7e-189 665.2 780 48.1
Sc09g0008870 Simmondsia chinensis HOM05D003461 ORTHO05D004386 1.7e-188 663.7 781 49.8
AT2G25660 Arabidopsis thaliana HOM05D003461 ORTHO05D004386 3.7e-188 662.5 742 50.3
CAN.G21.14 Capsicum annuum HOM05D003461 ORTHO05D004386 1.4e-187 660.6 794 47.4
arahy.Tifrunner.gnm1.ann1.3VS957 Arachis hypogaea HOM05D003461 ORTHO05D004386 1.2e-186 657.5 690 53.3
Carub.0004s0545 Capsella rubella HOM05D003461 ORTHO05D004386 2.0e-186 656.8 739 49.9
AUR62024833 Chenopodium quinoa HOM05D003461 ORTHO05D004386 2.2e-185 653.3 764 49.0
Medtr1g010300 Medicago truncatula HOM05D003461 ORTHO05D004386 2.9e-185 652.9 767 49.3
Peaxi162Scf00105g01315 Petunia axillaris HOM05D003461 ORTHO05D004386 5.0e-185 652.1 794 46.9
Cc08_g08280 Coffea canephora HOM05D003461 ORTHO05D004386 6.5e-185 651.7 793 46.7
PSO063G5065 Papaver somniferum HOM05D003461 ORTHO05D004386 1.2e-183 647.5 797 47.3
SalBow4G0560 Salvia bowleyana HOM05D003461 ORTHO05D004386 1.6e-183 647.1 782 45.9
PSO782G2185 Papaver somniferum HOM05D003461 ORTHO05D004386 6.1e-183 645.2 796 46.9
ECA240G1832 Erigeron canadensis HOM05D003461 ORTHO05D004386 1.5e-181 640.6 730 49.0
BcaB06g28084 Brassica carinata HOM05D003461 ORTHO05D004386 2.6e-181 639.8 728 50.0
BraA04t17575Z Brassica rapa HOM05D003461 ORTHO05D004386 9.7e-181 637.9 729 51.3
A04p19870 Brassica napus HOM05D003461 ORTHO05D004386 1.7e-180 637.1 729 51.2
ClCG05G017220 Citrullus lanatus HOM05D003461 ORTHO05D004386 2.2e-180 636.7 730 49.2
Glyma.06G073700 Glycine max HOM05D003461 ORTHO05D004386 2.2e-180 636.7 731 49.9
BcaC02g08333 Brassica carinata HOM05D003461 ORTHO05D004386 4.8e-180 635.6 732 50.8
BolC4t27084H Brassica oleracea HOM05D003461 ORTHO05D004386 4.8e-180 635.6 732 50.8
C04p55600 Brassica napus HOM05D003461 ORTHO05D004386 2.4e-179 633.3 732 50.7
Glyma.04G072400 Glycine max HOM05D003461 ORTHO05D004386 1.6e-178 630.6 677 52.4
Aqoxy7G01835 Aquilegia oxysepala HOM05D003461 ORTHO05D004386 8.5e-177 624.8 800 45.2
CsaV3_3G046700 Cucumis sativus L. HOM05D003461 ORTHO05D004386 1.5e-176 624.0 726 48.6
AUR62032384 Chenopodium quinoa HOM05D003461 ORTHO05D004386 1.8e-174 617.1 743 47.8
VMungo1309G0474 Vigna mungo HOM05D003461 ORTHO05D004386 2.3e-174 616.7 729 48.8
Hund03002 Selenicereus undatus HOM05D003461 ORTHO05D004386 3.0e-174 616.3 769 47.2
Ah.12g063310 Amaranthus hybridus HOM05D003461 ORTHO05D004386 4.0e-174 615.9 756 47.2
Sed0017351 Sechium edule HOM05D003461 ORTHO05D004386 2.0e-173 613.6 733 47.9
MELO3C003666.2 Cucumis melo HOM05D003461 ORTHO05D004386 3.4e-173 612.8 726 47.9
AUR62011223 Chenopodium quinoa HOM05D003461 ORTHO05D004386 1.4e-171 607.4 742 47.4
Lsat_1_v5_gn_5_45581 Lactuca sativa HOM05D003461 ORTHO05D004386 9.1e-171 604.7 734 47.7
Oeu019417.3 Olea europaea HOM05D003461 ORTHO05D004386 2.0e-170 603.6 749 47.3
TPR.G20094 Trifolium pratense HOM05D003461 ORTHO05D004386 2.7e-170 603.2 746 48.1
Phvul.009G098100 Phaseolus vulgaris HOM05D003461 ORTHO05D004386 5.5e-168 595.5 731 49.0
Psat6g031040 Pisum sativum HOM05D003461 ORTHO05D004386 9.5e-168 594.7 748 47.2
Lj1g0021913 Lotus japonicus HOM05D003461 ORTHO05D004386 6.8e-166 588.6 725 47.0
unitig_747.g21880 Utricularia gibba HOM05D003461 ORTHO05D004386 5.9e-162 575.5 747 45.0
HanXRQChr08g0221141 Helianthus annuus HOM05D003461 ORTHO05D004386 1.0e-161 574.7 680 48.2
Lj7C712G2 Lonicera japonica HOM05D003461 ORTHO05D004386 1.2e-157 561.2 651 49.9
Psat5g027760 Pisum sativum HOM05D003461 ORTHO05D004386 2.2e-148 530.4 716 45.7
Actinidia14640 Actinidia chinensis HOM05D003461 ORTHO05D004386 6.0e-146 522.3 620 48.5
Medtr3g108080 Medicago truncatula HOM05D003461 ORTHO05D004386 7.8e-146 521.9 722 42.9
TPR.G34693 Trifolium pratense HOM05D003461 ORTHO05D004386 5.1e-145 519.2 731 43.0
Actinidia15712 Actinidia chinensis HOM05D003461 ORTHO05D004386 5.2e-142 509.2 542 52.4
Os01g0179400 Oryza sativa ssp. japonica HOM05D003461 ORTHO05D004386 3.5e-138 496.5 647 45.1
Zm00001eb122270 Zea mays HOM05D003461 ORTHO05D004386 2.3e-137 493.8 646 45.2
Ca_15696_v3 Cicer arietinum L. HOM05D003461 ORTHO05D004386 2.1e-135 487.3 575 48.9
HPP92_015178 Vanilla planifolia HOM05D003461 ORTHO05D004386 8.4e-132 475.3 715 40.6
ATR0037G074 Amborella trichopoda HOM05D003461 ORTHO05D004386 2.1e-127 460.7 728 38.6
Ca_12907_v3 Cicer arietinum L. HOM05D003461 ORTHO05D004386 1.4e-126 458.0 519 50.9
Cpa.g.c45312 Carica papaya HOM05D003461 ORTHO05D004386 2.0e-93 347.8 393 51.9
Lsat_1_v5_gn_2_27900 Lactuca sativa HOM05D003461 ORTHO05D004386 4.1e-70 270.4 269 53.5
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 4.1e-70 270.4 269 53.5
Lsat_1_v5_gn_5_111480 Lactuca sativa HOM05D003461 ORTHO05D004386 4.1e-70 270.4 269 53.5
Lsat_1_v5_gn_4_58000 Lactuca sativa HOM05D003461 ORTHO05D004386 1.1e-67 262.3 269 52.4
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 3.2e-67 260.8 269 52.4
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 2.9e-60 237.7 189 63.0
AagrBONN_evm.TU.Sc2ySwM_228.5632 Anthoceros agrestis HOM05D003461 ORTHO05D004386 2.5e-59 234.6 641 30.4
Pp3c4_150 Physcomitrium patens HOM05D003461 ORTHO05D004386 2.7e-53 214.5 627 28.4
Manes.13G069700 Manihot esculenta HOM05D003461 ORTHO05D004386 1.0e-52 212.6 117 82.9
Mapoly0004s0170 Marchantia polymorpha HOM05D003461 ORTHO05D004386 4.2e-51 207.2 841 26.2
SEGI_30777 Sequoiadendron giganteum HOM05D003461 ORTHO05D004386 1.7e-47 195.3 430 34.9
SMO347G0057 Selaginella moellendorffii HOM05D003461 ORTHO05D004386 1.7e-36 158.7 605 22.8
SEGI_20580 Sequoiadendron giganteum HOM05D003461 ORTHO05D004386 2.8e-34 151.4 121 56.2
CBR_g20101 Chara braunii HOM05D003461 ORTHO05D004386 2.7e-29 134.8 281 33.1
Cfa013212 Carpinus fangiana HOM05D003461 ORTHO05D004386 4.6e-29 134.0 68 83.8
HPP92_015152 Vanilla planifolia HOM05D003461 ORTHO05D004386 1.1e-27 129.4 96 64.6
vmacro05447 Vaccinium macrocarpon HOM05D003461 ORTHO05D004386 1.6e-21 109.0 63 74.6
Actinidia15711 Actinidia chinensis HOM05D003461 ORTHO05D004386 7.8e-21 106.7 63 74.6
Lj7C712G4 Lonicera japonica HOM05D003461 ORTHO05D004386 4.2e-14 84.3 46 71.7
vmacro14339 Vaccinium macrocarpon HOM05D005386 ORTHO05D006981 4.3e-11 74.3 60 60.0
Lsat_1_v5_gn_7_102601 Lactuca sativa HOM05D002374 ORTHO05D014488 5.8e-08 63.9 105 37.1


User provided reference genes

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