Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 0.0e+00 4927.8 2536 100.0
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 0.0e+00 3972.2 2552 80.0
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3893.6 2554 78.6
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 0.0e+00 3871.6 2544 78.5
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 0.0e+00 3853.1 2544 78.4
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 3841.6 2570 77.7
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 0.0e+00 3835.8 2576 77.3
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 0.0e+00 3818.9 2543 77.2
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 0.0e+00 3812.3 2544 77.0
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 0.0e+00 3809.2 2546 77.1
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 0.0e+00 3804.6 2552 76.7
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3796.5 2539 77.1
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 0.0e+00 3762.6 2545 75.9
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 0.0e+00 3753.0 2563 76.2
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 0.0e+00 3744.5 2540 76.8
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3743.0 2557 76.1
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3724.5 2539 76.1
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3717.5 2555 75.7
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 0.0e+00 3699.1 2581 74.0
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 0.0e+00 3695.2 2539 75.2
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 0.0e+00 3692.9 2540 75.7
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 0.0e+00 3692.5 2537 75.3
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 0.0e+00 3664.8 2537 74.5
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 3664.4 2551 74.6
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 0.0e+00 3662.8 2542 75.1
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 0.0e+00 3636.7 2537 74.2
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 0.0e+00 3634.7 2545 74.5
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 0.0e+00 3614.7 2534 73.6
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 0.0e+00 3613.5 2616 73.2
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 0.0e+00 3608.5 2543 73.0
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3578.5 2537 72.8
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 3558.1 2541 73.4
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 0.0e+00 3526.5 2549 71.7
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 0.0e+00 3513.4 2543 72.0
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 0.0e+00 3474.9 2542 71.0
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 0.0e+00 3458.7 2545 70.7
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 0.0e+00 3447.5 2547 70.4
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 0.0e+00 3429.0 2553 70.4
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 0.0e+00 3422.9 2866 65.2
Phvul.009G099400 Phaseolus vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 3370.1 2233 77.9
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 0.0e+00 3365.5 2547 68.7
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 3340.4 2565 68.4
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 3334.3 2566 68.4
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 0.0e+00 3308.9 2559 68.3
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 0.0e+00 3305.4 2544 68.1
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 0.0e+00 3302.7 2545 68.5
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 0.0e+00 3297.3 2544 68.4
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 0.0e+00 3284.6 2546 68.1
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 0.0e+00 3267.6 2553 67.8
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 0.0e+00 3259.5 2365 71.5
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 0.0e+00 3249.1 2542 67.5
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 0.0e+00 3235.3 2599 67.2
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 0.0e+00 3231.8 2548 67.3
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3198.7 2542 66.0
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 0.0e+00 3191.0 2569 66.3
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 3178.7 2539 66.5
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 3178.7 2542 66.6
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 0.0e+00 3169.8 2572 65.9
QL12p030977 Quercus lobata HOM05D004019 ORTHO05D005136 0.0e+00 3169.4 1894 86.7
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 0.0e+00 3167.1 2551 65.2
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 0.0e+00 3161.3 2571 65.8
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 0.0e+00 3145.5 2412 68.4
Manes.03G064200 Manihot esculenta HOM05D004019 ORTHO05D005136 0.0e+00 3135.5 2087 78.0
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 0.0e+00 3113.6 2567 65.2
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 3064.2 2548 64.4
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 3062.7 2551 64.2
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 3030.4 2553 63.7
Thhalv10000005m.g Eutrema salsugineum HOM05D004019 ORTHO05D005136 0.0e+00 3014.2 2234 70.8
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 0.0e+00 2940.2 2646 61.8
Lj8C607G10 Lonicera japonica HOM05D004019 ORTHO05D005136 0.0e+00 2898.6 1872 79.6
MELO3C003655.2 Cucumis melo HOM05D004019 ORTHO05D005136 0.0e+00 2869.7 2036 72.8
VMungo1309G1295 Vigna mungo HOM05D004019 ORTHO05D005136 0.0e+00 2753.0 1732 81.5
Gohir.D05G051300 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2681.4 1643 83.0
FAN20G0521 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 2611.3 1836 73.6
Gohir.A05G049400 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2400.9 1741 71.2
Zm00001eb161040 Zea mays HOM05D004019 ORTHO05D005136 0.0e+00 2375.9 2314 55.7
Oeu063261.5 Olea europaea HOM05D004019 ORTHO05D005136 0.0e+00 2280.4 1725 70.1
DCAR_006256 Daucus carota HOM05D004019 ORTHO05D005136 0.0e+00 2244.2 1775 67.7
unitig_747.g21875 Utricularia gibba HOM05D004019 ORTHO05D005136 0.0e+00 2132.5 1699 66.5
Pp3c19_2530 Physcomitrium patens HOM05D004019 ORTHO05D005136 0.0e+00 2107.4 2708 46.9
Mapoly0049s0060 Marchantia polymorpha HOM05D004019 ORTHO05D005136 0.0e+00 2062.7 2770 45.1
Hma1.2p1_0140F.1_g063770 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1783.8 1177 78.2
Hma1.2p1_0140F.1_g063760 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1756.9 1187 75.7
Solyc08g068010.2 Solanum lycopersicum HOM05D004019 ORTHO05D005136 0.0e+00 1705.6 1146 77.5
Cpa.g.sc205.26 Carica papaya HOM05D004019 ORTHO05D005136 0.0e+00 1700.3 1099 81.2
SMO172G0089 Selaginella moellendorffii HOM05D004019 ORTHO05D005136 0.0e+00 1692.9 2562 42.0
Ah.12g060340 Amaranthus hybridus HOM05D004019 ORTHO05D005136 0.0e+00 1691.0 1420 64.8
vmacro08818 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 0.0e+00 1585.1 1153 73.7
Peaxi162Scf00105g00818 Petunia axillaris HOM05D004019 ORTHO05D005136 0.0e+00 1571.2 1144 73.3
CBR_g31401 Chara braunii HOM05D004019 ORTHO05D005136 0.0e+00 1538.9 2536 39.7
Nitab4.5_0000250g0110 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1486.5 1497 55.0
AagrBONN_evm.TU.Sc2ySwM_340.130 Anthoceros agrestis HOM05D004019 ORTHO05D005136 0.0e+00 1436.0 2667 36.9
FAN20G1524 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 1432.2 854 85.6
CDE10G0881 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1407.1 1632 48.7
SEGI_05898 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 0.0e+00 1390.6 1191 62.8
HPP92_006443 Vanilla planifolia HOM05D004019 ORTHO05D005136 0.0e+00 1357.0 1176 62.5
Nitab4.5_0002393g0030 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1342.8 1487 51.2
Gohir.A05G049350 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 1240.7 745 84.7
CDE10G0547 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1227.2 901 69.4
Haze_21656 Corylus avellana HOM05D004019 ORTHO05D005136 0.0e+00 1208.4 907 70.8
Haze_21654 Corylus avellana HOM05D004019 ORTHO05D005136 0.0e+00 1093.2 609 92.8
Haze_21655 Corylus avellana HOM05D004019 ORTHO05D005136 1.2e-302 1044.6 633 85.2
vmacro11105 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 3.8e-301 1039.6 673 80.7
HPP92_006442 Vanilla planifolia HOM05D004019 ORTHO05D005136 5.9e-286 989.2 1128 48.9
vmacro11102 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 2.3e-266 924.1 1032 51.7
QL12p030952 Quercus lobata HOM05D004019 ORTHO05D005136 1.5e-260 904.8 741 66.9
SHI11646 Sapria himalayana HOM05D004019 ORTHO05D000023 2.9e-256 890.6 1040 50.7
Ah.12g060350 Amaranthus hybridus HOM05D004019 ORTHO05D005136 5.5e-223 780.0 908 49.0
Cpa.g.sc205.24 Carica papaya HOM05D004019 ORTHO05D005136 3.2e-215 754.2 496 76.8
SHI11647 Sapria himalayana HOM05D004019 ORTHO05D005136 2.9e-208 731.1 856 47.7
ClCG05G017320 Citrullus lanatus HOM05D004019 ORTHO05D005136 3.1e-202 711.1 677 56.4
Nitab4.5_0000250g0120 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.1e-199 702.6 843 51.7
Solyc08g068040.3 Solanum lycopersicum HOM05D004019 ORTHO05D005136 4.7e-182 644.0 668 52.7
Peaxi162Scf00105g00812 Petunia axillaris HOM05D004019 ORTHO05D005136 9.8e-180 636.3 668 50.9
Hund02996 Selenicereus undatus HOM05D004019 ORTHO05D005136 2.4e-178 631.7 613 59.9
Peaxi162Scf00105g00817 Petunia axillaris HOM05D004019 ORTHO05D005136 1.2e-177 629.4 489 65.0
Nitab4.5_0002393g0010 Nicotiana tabacum HOM05D004019 ORTHO05D005136 5.0e-176 624.0 386 81.3
Cpa.g.sc205.19 Carica papaya HOM05D004019 ORTHO05D005136 6.3e-171 607.1 491 64.0
vmacro11103 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 6.6e-168 597.0 548 59.7
DCAR_006255 Daucus carota HOM05D004019 ORTHO05D005136 6.8e-149 533.9 501 59.5
SalBow4G2655 Salvia bowleyana HOM05D004019 ORTHO05D005136 2.4e-130 472.2 486 52.5
SEGI_01785 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 3.4e-124 451.8 513 48.3
Os01g0593000 Oryza sativa ssp. japonica HOM05D004019 ORTHO05D005136 2.4e-114 419.1 264 76.9
vmacro11104 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 2.1e-110 406.0 239 87.9
vmacro11106 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 5.9e-92 344.7 229 74.2
Nitab4.5_0000250g0090 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.3e-91 343.6 180 91.1
Cpa.g.sc205.16 Carica papaya HOM05D004019 ORTHO05D005136 5.5e-90 338.2 328 57.0
Haze_21653 Corylus avellana HOM05D004019 ORTHO05D005136 2.1e-89 336.3 219 78.5
Cfa013229 Carpinus fangiana HOM05D004019 ORTHO05D005136 4.7e-89 335.1 207 82.1
Hma1.2p1_0140F.1_g063780 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 1.0e-88 334.0 204 85.8
unitig_747.g21874 Utricularia gibba HOM05D004019 ORTHO05D005136 4.8e-86 325.1 347 51.0
Ah.12g060330 Amaranthus hybridus HOM05D004019 ORTHO05D005136 9.1e-85 320.9 180 84.4
DCAR_006257 Daucus carota HOM05D004019 ORTHO05D005136 5.9e-76 291.6 151 95.4
SEGI_29718 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 8.0e-73 281.2 158 84.2
SHI11644 Sapria himalayana HOM05D004019 ORTHO05D000014 7.7e-68 264.6 253 56.5
DCAR_006254 Daucus carota HOM05D004019 ORTHO05D005136 3.6e-57 229.2 309 45.0
Cc00_g31360 Coffea canephora HOM05D004019 ORTHO05D005136 1.5e-55 223.8 311 41.2
Cc08_g08730 Coffea canephora HOM05D000021 ORTHO05D000010 8.3e-54 218.0 309 42.7
Nitab4.5_0000250g0100 Nicotiana tabacum HOM05D004019 ORTHO05D005136 5.4e-53 215.3 339 42.8
PRCOL_00001920 Prasinoderma coloniale HOM05D004019 ORTHO05D005136 3.3e-50 206.1 1964 22.5
unitig_747.g21873 Utricularia gibba HOM05D004019 ORTHO05D005136 1.8e-48 200.3 310 41.0
SHI11640 Sapria himalayana HOM05D004019 ORTHO05D000023 3.4e-47 196.1 258 45.7
Hma1.2p1_0140F.1_g063800 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 1.3e-38 167.5 116 74.1
HanXRQChr03g0075941 Helianthus annuus HOM05D004019 ORTHO05D005136 1.4e-37 164.1 103 77.7
PGR042G0250 Punica granatum HOM05D004019 ORTHO05D005136 1.6e-36 160.6 147 53.1
AUR62038490 Chenopodium quinoa HOM05D004019 ORTHO05D005136 2.3e-35 156.8 116 74.1
Prupe.5G099400 Prunus persica HOM05D004019 ORTHO05D005136 3.2e-29 136.3 96 72.9
Solyc08g068030.1 Solanum lycopersicum HOM05D004019 ORTHO05D005136 3.2e-29 136.3 143 50.3
Lsat_1_v5_gn_4_165520 Lactuca sativa HOM05D004019 ORTHO05D005136 1.6e-25 124.0 144 49.3
Prupe.5G112400 Prunus persica HOM05D004019 ORTHO05D005136 3.6e-25 122.9 120 57.5
MD00G1060000 Malus domestica HOM05D004019 ORTHO05D005136 1.8e-24 120.6 101 69.3
MD08G1211900 Malus domestica HOM05D004019 ORTHO05D005136 1.8e-24 120.6 101 69.3
Oeu022768.1 Olea europaea HOM05D004019 ORTHO05D005136 5.2e-24 119.0 120 50.8
Medtr3g108370 Medicago truncatula HOM05D004019 ORTHO05D005136 1.6e-20 107.5 183 42.1
Actinidia14324 Actinidia chinensis HOM05D004019 ORTHO05D005136 8.7e-19 101.7 129 53.5
Medtr3g109982 Medicago truncatula HOM05D000051 ORTHO05D000015 2.8e-17 96.7 205 36.6
TPR.G12424 Trifolium pratense HOM05D004019 ORTHO05D005136 4.7e-17 95.9 88 58.0
Medtr3g107940 Medicago truncatula HOM05D004019 ORTHO05D000015 5.2e-16 92.4 96 55.2
SHI11643 Sapria himalayana HOM05D004019 ORTHO05D035247 1.5e-15 90.9 81 58.0
Actinidia36698 Actinidia chinensis HOM05D004019 ORTHO05D005136 3.4e-15 89.7 123 52.0
Haze_21651 Corylus avellana HOM05D004019 ORTHO05D005136 7.6e-15 88.6 47 91.5
FvH4_2g30421 Fragaria vesca HOM05D004019 ORTHO05D035788 9.9e-15 88.2 84 56.0
FvH4_2g30290 Fragaria vesca HOM05D004019 ORTHO05D035247 1.1e-13 84.7 67 67.2
FAN24G2522 Fragaria x ananassa HOM05D004019 ORTHO05D035247 1.1e-13 84.7 67 67.2
Glyma.04G073626 Glycine max HOM05D004019 ORTHO05D005136 1.4e-13 84.3 51 82.4
Hund02993 Selenicereus undatus HOM05D004019 ORTHO05D000004 1.2e-12 81.3 75 60.0
Actinidia31247 Actinidia chinensis HOM05D004019 ORTHO05D005136 7.8e-12 78.6 74 60.8
Hund02997 Selenicereus undatus HOM05D004019 ORTHO05D005136 2.3e-11 77.0 48 81.2
Actinidia23592 Actinidia chinensis HOM05D004019 ORTHO05D005136 8.7e-11 75.1 79 62.0
Potri.018G035601 Populus trichocarpa HOM05D004019 ORTHO05D005136 8.7e-11 75.1 61 62.3
Cpa.g.sc205.23 Carica papaya HOM05D004019 ORTHO05D005136 5.6e-10 72.4 61 68.9
TPR.G26502 Trifolium pratense HOM05D000051 ORTHO05D000015 9.6e-10 71.6 100 50.0
Cc08_g08790 Coffea canephora HOM05D004019 ORTHO05D005136 3.1e-08 66.6 58 56.9
Medtr3g110010 Medicago truncatula HOM05D001346 ORTHO05D001205 5.3e-08 65.9 137 36.5
Psat5g042320 Pisum sativum HOM05D000051 ORTHO05D000015 5.3e-08 65.9 137 35.0
Nitab4.5_0005144g0040 Nicotiana tabacum HOM05D004019 ORTHO05D005136 9.0e-08 65.1 70 50.0
Cc00_g28950 Coffea canephora HOM05D004019 ORTHO05D005136 2.6e-07 63.5 58 56.9


User provided reference genes

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