Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G212500 Carya illinoinensis HOM05D013263 ORTHO05D009846 4.1e-206 721.5 452 100.0
QL12p025151 Quercus lobata HOM05D013263 ORTHO05D009846 9.9e-59 231.9 400 49.0
Cfa013269 Carpinus fangiana HOM05D014278 ORTHO05D009846 2.7e-56 223.8 484 41.5
Haze_21737 Corylus avellana HOM05D014278 ORTHO05D009846 2.4e-41 174.1 451 42.6
Prupe.1G460100 Prunus persica HOM05D013263 ORTHO05D009846 4.8e-37 159.8 426 37.1
MD15G1107800 Malus domestica HOM05D013263 ORTHO05D009846 2.6e-35 154.1 409 37.2
Duzib168G1354 Durio zibethinus HOM05D019025 ORTHO05D009846 6.7e-31 139.4 407 35.1
Potri.006G274600 Populus trichocarpa HOM05D014278 ORTHO05D009846 7.4e-30 136.0 395 36.7
Potri.018G005500 Populus trichocarpa HOM05D014278 ORTHO05D009846 9.6e-30 135.6 397 39.0
Duzib187G1602 Durio zibethinus HOM05D019025 ORTHO05D009846 2.8e-29 134.0 393 37.2
Sabra18G0011200 Salix brachista HOM05D014278 ORTHO05D009846 2.4e-28 131.0 413 37.5
Sabra18G0013600 Salix brachista HOM05D014278 ORTHO05D009846 4.0e-28 130.2 413 37.5
Manes.16G135600 Manihot esculenta HOM05D014278 ORTHO05D009846 2.0e-27 127.9 397 36.5
MD08G1128300 Malus domestica HOM05D013263 ORTHO05D009846 3.8e-26 123.6 406 35.5
Ciclev10010613m.g Citrus clementina HOM05D014278 ORTHO05D009846 4.9e-26 123.2 422 38.4
TWI32G0873 Tripterygium wilfordii HOM05D013263 ORTHO05D009846 5.5e-25 119.8 417 33.8
Rhsim07G0169800 Rhododendron simsii HOM05D033576 ORTHO05D009846 6.1e-24 116.3 396 35.4
FAN27G1111 Fragaria x ananassa HOM05D013263 ORTHO05D009846 1.1e-20 105.5 421 32.8
FvH4_2g36751 Fragaria vesca HOM05D013263 ORTHO05D009846 5.3e-20 103.2 421 32.5
TWI34G1417 Tripterygium wilfordii HOM05D014278 ORTHO05D009846 5.3e-20 103.2 413 34.4
FAN15G3280 Fragaria x ananassa HOM05D013263 ORTHO05D009846 1.2e-19 102.1 420 32.1
RcHm_v2.0_Chr6g0304991 Rosa chinensis HOM05D013263 ORTHO05D009846 1.7e-18 98.2 416 32.7
FAN20G1345 Fragaria x ananassa HOM05D013263 ORTHO05D009846 9.4e-17 92.4 417 30.7
THA.LOC104803324 Tarenaya hassleriana HOM05D008799 ORTHO05D010975 1.8e-15 88.2 393 30.5
Cc00_g05330 Coffea canephora HOM05D009522 ORTHO05D009846 3.9e-15 87.0 390 28.5
Lj1g0027444 Lotus japonicus HOM05D013197 ORTHO05D009846 2.0e-14 84.7 449 34.3
PGR031G3799 Punica granatum HOM05D009522 ORTHO05D009846 2.0e-14 84.7 396 31.8
COL.COLO4_19033 Corchorus olitorius HOM05D019025 ORTHO05D009846 5.7e-14 83.2 415 30.1
THA.LOC104814972 Tarenaya hassleriana HOM05D008799 ORTHO05D010975 9.7e-14 82.4 407 33.4
MELO3C011188.2 Cucumis melo HOM05D019337 ORTHO05D009846 2.8e-13 80.9 414 29.7
ClCG08G012670 Citrullus lanatus HOM05D019337 ORTHO05D009846 8.2e-13 79.3 403 30.3
Nn8g40403 Nelumbo nucifera HOM05D021794 ORTHO05D016335 1.4e-12 78.6 434 28.6
Thecc.09G007200 Theobroma cacao HOM05D019025 ORTHO05D009846 1.8e-12 78.2 389 32.6
Atru.chr7.2642 Acer truncatum HOM05D019337 ORTHO05D009846 3.1e-12 77.4 421 34.7
CsaV3_2G031380 Cucumis sativus L. HOM05D019337 ORTHO05D009846 9.1e-12 75.9 409 30.8
Oeu018569.1 Olea europaea HOM05D009522 ORTHO05D009846 9.1e-12 75.9 385 32.2
Gorai.009G067700 Gossypium raimondii HOM05D019025 ORTHO05D009846 1.5e-11 75.1 476 27.3
Aqoxy7G02994 Aquilegia oxysepala HOM05D021794 ORTHO05D009846 2.6e-11 74.3 398 29.6
Sed0008235 Sechium edule HOM05D019337 ORTHO05D009846 3.4e-11 73.9 398 31.4
Lalb_Chr08g0243541 Lupinus albus HOM05D013197 ORTHO05D012811 7.7e-11 72.8 411 32.1
EL10Ac2g03757 Beta vulgaris HOM05D016385 ORTHO05D018262 1.7e-10 71.6 406 31.0
Sed0003431 Sechium edule HOM05D019337 ORTHO05D009846 1.7e-10 71.6 402 31.1
ECA240G3142 Erigeron canadensis HOM05D009522 ORTHO05D009846 5.0e-10 70.1 63 65.1
MBI14_g19445_MAGBIO Magnolia biondii HOM05D021794 ORTHO05D009846 6.5e-10 69.7 387 29.7
Cpa.g.sc23.16 Carica papaya HOM05D013263 ORTHO05D009846 1.9e-09 68.2 173 38.2
Gohir.D05G066900 Gossypium hirsutum HOM05D019025 ORTHO05D009846 1.9e-09 68.2 502 25.5
Dinv21138 Davidia involucrata HOM05D003021 ORTHO05D009846 1.2e-08 65.5 48 75.0
CAN.G908.7 Capsicum annuum HOM05D009522 ORTHO05D009846 1.6e-08 65.1 398 31.9
Gohir.A05G064300 Gossypium hirsutum HOM05D019025 ORTHO05D009846 2.7e-08 64.3 494 25.9
Lalb_Chr11g0064151 Lupinus albus HOM05D013197 ORTHO05D012811 2.7e-08 64.3 403 32.8
Solyc12g096400.2 Solanum lycopersicum HOM05D009522 ORTHO05D009846 4.7e-08 63.5 422 30.8
PGSC0003DMG400029280 Solanum tuberosum HOM05D009522 ORTHO05D009846 6.1e-08 63.2 422 30.1
Lalb_Chr23g0269121 Lupinus albus HOM05D013197 ORTHO05D012811 1.0e-07 62.4 445 30.3
SGA_v2.0_scaffold27G11671 Striga asiatica HOM05D009522 ORTHO05D009846 1.8e-07 61.6 383 30.3
Nitab4.5_0002023g0020 Nicotiana tabacum HOM05D009522 ORTHO05D009846 3.9e-07 60.5 60 66.7
Glyma.06G076700 Glycine max HOM05D013197 ORTHO05D012811 5.1e-07 60.1 398 30.7
Medtr3g108830 Medicago truncatula HOM05D013197 ORTHO05D009846 5.1e-07 60.1 45 75.6
CAN.G566.64 Capsicum annuum HOM05D009522 ORTHO05D009846 6.7e-07 59.7 423 29.6
Nitab4.5_0001159g0190 Nicotiana tabacum HOM05D009522 ORTHO05D009846 6.7e-07 59.7 404 28.5
Nitab4.5_0010092g0020 Nicotiana tabacum HOM05D009522 ORTHO05D009846 6.7e-07 59.7 405 27.9
PSO063G5953 Papaver somniferum HOM05D021794 ORTHO05D016335 6.7e-07 59.7 427 28.3
Peaxi162Scf00045g01739 Petunia axillaris HOM05D017514 ORTHO05D009846 8.8e-07 59.3 83 50.6
Hund03292 Selenicereus undatus HOM05D016385 ORTHO05D018262 1.1e-06 58.9 437 28.4
BcaB05g21498 Brassica carinata HOM05D008799 ORTHO05D010975 1.5e-06 58.5 79 54.4
AUR62009070 Chenopodium quinoa HOM05D016385 ORTHO05D018262 1.5e-06 58.5 419 29.1
CARHR188570 Cardamine hirsuta HOM05D008799 ORTHO05D010975 2.6e-06 57.8 407 30.5
HanXRQChr03g0082551 Helianthus annuus HOM05D014278 ORTHO05D009846 2.6e-06 57.8 79 50.6
AUR62018150 Chenopodium quinoa HOM05D003021 ORTHO05D002235 3.3e-06 57.4 50 60.0
CsaV3_5G038410 Cucumis sativus L. HOM05D003021 ORTHO05D002235 3.3e-06 57.4 60 56.7
arahy.Tifrunner.gnm1.ann1.5VU8UR Arachis hypogaea HOM05D041085 ORTHO05D012811 4.4e-06 57.0 49 63.3
arahy.Tifrunner.gnm1.ann1.8MY5LV Arachis hypogaea HOM05D041085 ORTHO05D012811 4.4e-06 57.0 49 63.3
MSTRG.11810 Avicennia marina HOM05D009522 ORTHO05D009846 4.4e-06 57.0 42 71.4
AUR62042563 Chenopodium quinoa HOM05D003021 ORTHO05D002235 4.4e-06 57.0 37 78.4
Hma1.2p1_1813F.1_g303770 Hydrangea macrophylla HOM05D003021 ORTHO05D002235 4.4e-06 57.0 67 52.2
Hma1.2p1_3044F.1_g332070 Hydrangea macrophylla HOM05D003021 ORTHO05D002235 4.4e-06 57.0 67 52.2
Lj8P444T9 Lonicera japonica HOM05D009522 ORTHO05D009846 4.4e-06 57.0 133 40.6
TAR629G0828 Trochodendron aralioides HOM05D003021 ORTHO05D002235 4.4e-06 57.0 43 72.1
Aa31LG11G4080 Aethionema arabicum HOM05D008799 ORTHO05D010975 5.7e-06 56.6 47 72.3
MELO3C022022.2 Cucumis melo HOM05D003021 ORTHO05D002235 5.7e-06 56.6 52 63.5
Dinv33810 Davidia involucrata HOM05D005960 ORTHO05D007537 5.7e-06 56.6 40 75.0
Migut.E01423 Erythranthe guttata HOM05D009522 ORTHO05D009846 5.7e-06 56.6 51 60.8
Oeu000855.1 Olea europaea HOM05D003021 ORTHO05D002235 5.7e-06 56.6 40 75.0
Oeu062145.1 Olea europaea HOM05D003021 ORTHO05D002235 5.7e-06 56.6 40 75.0
Rhsim08G0073600 Rhododendron simsii HOM05D003021 ORTHO05D002235 5.7e-06 56.6 40 75.0
Actinidia01976 Actinidia chinensis HOM05D003021 ORTHO05D002235 7.4e-06 56.2 40 75.0
Ah.10g033870 Amaranthus hybridus HOM05D016385 ORTHO05D018262 7.4e-06 56.2 468 26.3
ClCG11G004640 Citrullus lanatus HOM05D003021 ORTHO05D002235 7.4e-06 56.2 40 75.0
QL02p039488 Quercus lobata HOM05D003021 ORTHO05D002235 7.4e-06 56.2 40 75.0
A03p04690 Brassica napus HOM05D008799 ORTHO05D010975 9.7e-06 55.8 56 64.3
Lsat_1_v5_gn_4_170321 Lactuca sativa HOM05D003021 ORTHO05D002235 9.7e-06 55.8 43 69.8


User provided reference genes

Program Settings