Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G212300 Carya illinoinensis HOM05D004975 ORTHO05D005963 5.7e-25 116.7 56 100.0
CiPaw.01G062200 Carya illinoinensis HOM05D004975 ORTHO05D005963 1.1e-12 75.9 48 77.1
CiPaw.08G019900 Carya illinoinensis HOM05D004975 ORTHO05D005963 1.1e-12 75.9 48 77.1
QL12p025158 Quercus lobata HOM05D004975 ORTHO05D005963 1.5e-12 75.5 48 75.0
Peaxi162Scf00105g00510 Petunia axillaris HOM05D004975 ORTHO05D005963 2.5e-12 74.7 48 75.0
Duzib187G1289 Durio zibethinus HOM05D004975 ORTHO05D005963 3.3e-12 74.3 48 72.9
Duzib168G2230 Durio zibethinus HOM05D004975 ORTHO05D005963 7.3e-12 73.2 48 72.9
MD08G1128100 Malus domestica HOM05D004975 ORTHO05D005963 7.3e-12 73.2 48 70.8
MD15G1107600 Malus domestica HOM05D004975 ORTHO05D005963 7.3e-12 73.2 48 70.8
Prupe.1G459900 Prunus persica HOM05D004975 ORTHO05D005963 7.3e-12 73.2 48 70.8
Solyc08g065760.3 Solanum lycopersicum HOM05D004975 ORTHO05D005963 7.3e-12 73.2 48 72.9
Sopen08g019440 Solanum pennellii HOM05D004975 ORTHO05D005963 7.3e-12 73.2 48 72.9
Sopen10g033590 Solanum pennellii HOM05D004975 ORTHO05D005963 7.3e-12 73.2 48 72.9
Manes.17G086700 Manihot esculenta HOM05D004975 ORTHO05D005963 9.5e-12 72.8 48 70.8
GSVIVG01009932001 Vitis vinifera HOM05D004975 ORTHO05D005963 1.2e-11 72.4 48 70.8
EL10Ac2g04836 Beta vulgaris HOM05D004975 ORTHO05D005963 1.6e-11 72.0 48 70.8
PGSC0003DMG400013829 Solanum tuberosum HOM05D004975 ORTHO05D005963 1.6e-11 72.0 48 70.8
Gohir.A07G060900 Gossypium hirsutum HOM05D004975 ORTHO05D005963 2.1e-11 71.6 48 70.8
Gorai.001G069100 Gossypium raimondii HOM05D004975 ORTHO05D005963 2.1e-11 71.6 48 70.8
MBI16_g41808_MAGBIO Magnolia biondii HOM05D004975 ORTHO05D005963 2.1e-11 71.6 48 68.8
Hund22233 Selenicereus undatus HOM05D004975 ORTHO05D005963 2.1e-11 71.6 48 70.8
Sc24g0001980 Simmondsia chinensis HOM05D004975 ORTHO05D005963 2.1e-11 71.6 48 70.8
MSTRG.11721 Avicennia marina HOM05D004975 ORTHO05D005963 2.8e-11 71.2 48 72.9
ClCG10G000990 Citrullus lanatus HOM05D004975 ORTHO05D005963 2.8e-11 71.2 48 70.8
Nitab4.5_0000250g0160 Nicotiana tabacum HOM05D004975 ORTHO05D005963 2.8e-11 71.2 48 70.8
Nitab4.5_0002393g0070 Nicotiana tabacum HOM05D004975 ORTHO05D005963 2.8e-11 71.2 48 70.8
Os07g0544900 Oryza sativa ssp. japonica HOM05D004975 ORTHO05D005963 2.8e-11 71.2 48 70.8
ATR0580G184 Amborella trichopoda HOM05D004975 ORTHO05D005963 3.6e-11 70.9 48 70.8
AL7G20600 Arabidopsis lyrata HOM05D004975 ORTHO05D005963 3.6e-11 70.9 48 70.8
AT4G31460 Arabidopsis thaliana HOM05D004975 ORTHO05D005963 3.6e-11 70.9 48 70.8
arahy.Tifrunner.gnm1.ann1.1NF0KF Arachis hypogaea HOM05D004975 ORTHO05D005963 3.6e-11 70.9 48 70.8
arahy.Tifrunner.gnm1.ann1.GL41SS Arachis hypogaea HOM05D004975 ORTHO05D005963 3.6e-11 70.9 48 70.8
BcaB03g12697 Brassica carinata HOM05D004975 ORTHO05D005963 3.6e-11 70.9 48 70.8
BcaC01g01087 Brassica carinata HOM05D004975 ORTHO05D005963 3.6e-11 70.9 48 70.8
BcaC09g51928 Brassica carinata HOM05D004975 ORTHO05D005963 3.6e-11 70.9 48 70.8
BcaNung04586 Brassica carinata HOM05D004975 ORTHO05D005963 3.6e-11 70.9 48 70.8
A01p06810 Brassica napus HOM05D004975 ORTHO05D005963 3.6e-11 70.9 48 70.8
A08p18600 Brassica napus HOM05D004975 ORTHO05D005963 3.6e-11 70.9 48 70.8
C01p07550 Brassica napus HOM05D004975 ORTHO05D005963 3.6e-11 70.9 48 70.8
C03p87960 Brassica napus HOM05D004975 ORTHO05D005963 3.6e-11 70.9 48 70.8
BolC1t00736H Brassica oleracea HOM05D004975 ORTHO05D005963 3.6e-11 70.9 48 70.8
BolC3t21107H Brassica oleracea HOM05D004975 ORTHO05D005963 3.6e-11 70.9 48 70.8
BraA01t00633Z Brassica rapa HOM05D004975 ORTHO05D005963 3.6e-11 70.9 48 70.8
BraA08t33823Z Brassica rapa HOM05D004975 ORTHO05D005963 3.6e-11 70.9 48 70.8
Carub.0007s0909 Capsella rubella HOM05D004975 ORTHO05D005963 3.6e-11 70.9 48 70.8
Cpa.g.sc6.221 Carica papaya HOM05D004975 ORTHO05D005963 3.6e-11 70.9 48 68.8
Thhalv10026230m.g Eutrema salsugineum HOM05D004975 ORTHO05D005963 3.6e-11 70.9 48 70.8
Glyma.11G153169 Glycine max HOM05D004975 ORTHO05D005963 3.6e-11 70.9 48 70.8
Glyma.12G071700 Glycine max HOM05D004975 ORTHO05D005963 3.6e-11 70.9 48 70.8
Gohir.D07G065600 Gossypium hirsutum HOM05D004975 ORTHO05D005963 3.6e-11 70.9 48 70.8
Phvul.011G072600 Phaseolus vulgaris HOM05D004975 ORTHO05D005963 3.6e-11 70.9 48 70.8
Sp7g29320 Schrenkiella parvula HOM05D004975 ORTHO05D005963 3.6e-11 70.9 48 70.8
TWI34G1428 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 3.6e-11 70.9 48 68.8
unitig_46.g18530 Utricularia gibba HOM05D004975 ORTHO05D005963 3.6e-11 70.9 48 70.8
VMungo1127G2243 Vigna mungo HOM05D004975 ORTHO05D005963 3.6e-11 70.9 48 70.8
Dinv30242 Davidia involucrata HOM05D004975 ORTHO05D005963 4.7e-11 70.5 48 70.8
Solyc10g038060.2 Solanum lycopersicum HOM05D004975 ORTHO05D005963 4.7e-11 70.5 48 70.8
SGA_v2.0_scaffold229G43318 Striga asiatica HOM05D004975 ORTHO05D005963 4.7e-11 70.5 48 68.8
Thecc.09G007400 Theobroma cacao HOM05D004975 ORTHO05D005963 4.7e-11 70.5 48 68.8
Aa31LG2G18860 Aethionema arabicum HOM05D004975 ORTHO05D005963 6.2e-11 70.1 48 68.8
EL10Ac4g08846 Beta vulgaris HOM05D004975 ORTHO05D005963 6.2e-11 70.1 48 66.7
Hma1.2p1_0140F.1_g063690 Hydrangea macrophylla HOM05D004975 ORTHO05D005963 6.2e-11 70.1 48 70.8
THA.LOC104803875 Tarenaya hassleriana HOM05D004975 ORTHO05D005963 6.2e-11 70.1 48 68.8
TAR383G0873 Trochodendron aralioides HOM05D004975 ORTHO05D005963 6.2e-11 70.1 50 66.0
Aqoxy7G00181 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 8.0e-11 69.7 48 68.8
CsaV3_3G001030 Cucumis sativus L. HOM05D004975 ORTHO05D005963 8.0e-11 69.7 48 68.8
Migut.A00251 Erythranthe guttata HOM05D004975 ORTHO05D005963 8.0e-11 69.7 48 68.8
Hund06848 Selenicereus undatus HOM05D004975 ORTHO05D005963 8.0e-11 69.7 48 68.8
Ah.06g191340 Amaranthus hybridus HOM05D004975 ORTHO05D005963 1.1e-10 69.3 48 66.7
Cc08_g08560 Coffea canephora HOM05D004975 ORTHO05D005963 1.1e-10 69.3 48 68.8
COL.COLO4_19031 Corchorus olitorius HOM05D004975 ORTHO05D005963 1.1e-10 69.3 48 68.8
MELO3C013792.2 Cucumis melo HOM05D004975 ORTHO05D005963 1.1e-10 69.3 48 68.8
Lalb_Chr18g0045061 Lupinus albus HOM05D004975 ORTHO05D005963 1.1e-10 69.3 48 68.8
TAR383G0773 Trochodendron aralioides HOM05D004975 ORTHO05D005963 1.1e-10 69.3 48 66.7
TAR625G0147 Trochodendron aralioides HOM05D004975 ORTHO05D005963 1.1e-10 69.3 48 66.7
BcaC01g01097 Brassica carinata HOM05D004975 ORTHO05D005963 1.4e-10 68.9 48 68.8
C03p88060 Brassica napus HOM05D004975 ORTHO05D005963 1.4e-10 68.9 48 68.8
SGA_v2.0_scaffold27G11528 Striga asiatica HOM05D004975 ORTHO05D005963 1.4e-10 68.9 48 66.7
arahy.Tifrunner.gnm1.ann1.KS8K1P Arachis hypogaea HOM05D004975 ORTHO05D005963 1.8e-10 68.6 48 68.8
Medtr1g007480 Medicago truncatula HOM05D004975 ORTHO05D005963 1.8e-10 68.6 48 66.7
PGR044G1665 Punica granatum HOM05D004975 ORTHO05D005963 1.8e-10 68.6 48 66.7
TPR.G24523 Trifolium pratense HOM05D004975 ORTHO05D005963 1.8e-10 68.6 48 66.7
CSS0002597 Camellia sinensis var. sinensis HOM05D004975 ORTHO05D005963 2.3e-10 68.2 48 66.7
CDE02G4585 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 2.3e-10 68.2 46 67.4
CDE05G0021 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 2.3e-10 68.2 46 67.4
CARHR239350 Cardamine hirsuta HOM05D004975 ORTHO05D005963 3.1e-10 67.8 48 64.6
Lsat_1_v5_gn_1_49060 Lactuca sativa HOM05D004975 ORTHO05D005963 3.1e-10 67.8 48 64.6
Lj3g0002799 Lotus japonicus HOM05D004975 ORTHO05D005963 3.1e-10 67.8 48 66.7
Lj3g0015990 Lotus japonicus HOM05D004975 ORTHO05D005963 3.1e-10 67.8 48 66.7
TWI63G0658 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 3.1e-10 67.8 48 66.7
CANSAT25G3538 Cannabis sativa HOM05D004975 ORTHO05D005963 4.0e-10 67.4 48 64.6
CANSAT64G0033 Cannabis sativa HOM05D004975 ORTHO05D005963 4.0e-10 67.4 48 64.6
PSO063G2087 Papaver somniferum HOM05D004975 ORTHO05D005963 4.0e-10 67.4 48 68.8
PSO170G1562 Papaver somniferum HOM05D004975 ORTHO05D005963 4.0e-10 67.4 48 68.8
Potri.018G006900 Populus trichocarpa HOM05D004975 ORTHO05D005963 4.0e-10 67.4 48 64.6
Sed0019969 Sechium edule HOM05D004975 ORTHO05D005963 4.0e-10 67.4 48 66.7
Ciclev10009422m.g Citrus clementina HOM05D004975 ORTHO05D005963 5.2e-10 67.0 48 64.6
ECA248G0122 Erigeron canadensis HOM05D004975 ORTHO05D005963 5.2e-10 67.0 48 62.5
ECA248G2823 Erigeron canadensis HOM05D004975 ORTHO05D005963 5.2e-10 67.0 48 62.5
RcHm_v2.0_Chr6g0305011 Rosa chinensis HOM05D004975 ORTHO05D005963 5.2e-10 67.0 48 64.6
SEGI_29047 Sequoiadendron giganteum HOM05D004975 ORTHO05D005963 5.2e-10 67.0 48 64.6
Atru.chr7.2646 Acer truncatum HOM05D004975 ORTHO05D005963 6.8e-10 66.6 48 64.6
Eucgr.H01931 Eucalyptus grandis HOM05D004975 ORTHO05D005963 6.8e-10 66.6 48 64.6
Zm00001eb323470 Zea mays HOM05D004975 ORTHO05D005963 6.8e-10 66.6 48 64.6
Actinidia13302 Actinidia chinensis HOM05D004975 ORTHO05D005963 8.9e-10 66.2 48 66.7
Actinidia13417 Actinidia chinensis HOM05D004975 ORTHO05D005963 8.9e-10 66.2 48 66.7
FvH4_2g36661 Fragaria vesca HOM05D004975 ORTHO05D005963 8.9e-10 66.2 48 64.6
FvH4_7g03740 Fragaria vesca HOM05D004975 ORTHO05D005963 8.9e-10 66.2 48 64.6
FAN06G0478 Fragaria x ananassa HOM05D004975 ORTHO05D005963 8.9e-10 66.2 48 64.6
FAN20G1154 Fragaria x ananassa HOM05D007251 ORTHO05D009266 8.9e-10 66.2 48 64.6
HanXRQChr01g0029381 Helianthus annuus HOM05D004975 ORTHO05D005963 8.9e-10 66.2 48 64.6
HanXRQChr11g0341541 Helianthus annuus HOM05D004975 ORTHO05D005963 8.9e-10 66.2 48 64.6
Psat6g036480 Pisum sativum HOM05D004975 ORTHO05D005963 8.9e-10 66.2 48 64.6
Zm00001eb106440 Zea mays HOM05D004975 ORTHO05D005963 8.9e-10 66.2 48 62.5
PSO782G1312 Papaver somniferum HOM05D004975 ORTHO05D005963 1.2e-09 65.9 48 66.7
Rhsim04G0150100 Rhododendron simsii HOM05D004975 ORTHO05D005963 1.2e-09 65.9 48 64.6
HPP92_011116 Vanilla planifolia HOM05D004975 ORTHO05D005963 1.2e-09 65.9 48 62.5
HPP92_011121 Vanilla planifolia HOM05D004975 ORTHO05D005963 1.2e-09 65.9 48 62.5
DCAR_007697 Daucus carota HOM05D004975 ORTHO05D005963 1.5e-09 65.5 48 64.6
AagrBONN_evm.TU.Sc2ySwM_117.1642 Anthoceros agrestis HOM05D004975 ORTHO05D005963 2.0e-09 65.1 48 62.5
Ca_12771_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 2.0e-09 65.1 48 62.5
PSO063G4606 Papaver somniferum HOM05D004975 ORTHO05D005963 2.0e-09 65.1 48 66.7
Pp3c2_35700 Physcomitrium patens HOM05D004975 ORTHO05D005963 2.0e-09 65.1 48 66.7
Mapoly0026s0002 Marchantia polymorpha HOM05D004975 ORTHO05D005963 3.4e-09 64.3 48 64.6
SHI04272 Sapria himalayana HOM05D004975 ORTHO05D005963 1.3e-08 62.4 67 47.8
SMO367G1088 Selaginella moellendorffii HOM05D004975 ORTHO05D005963 1.7e-08 62.0 48 58.3
arahy.Tifrunner.gnm1.ann1.57HDZK Arachis hypogaea HOM05D004975 ORTHO05D005963 7.8e-06 53.1 48 56.2


User provided reference genes

Program Settings