Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G206800 Carya illinoinensis HOM05D001880 ORTHO05D005098 2.9e-123 445.3 234 100.0
ClCG11G014050 Citrullus lanatus HOM05D001880 ORTHO05D005098 1.2e-105 386.7 215 91.6
CsaV3_3G047450 Cucumis sativus L. HOM05D001880 ORTHO05D005098 3.6e-105 385.2 215 91.6
CiPaw.08G023800 Carya illinoinensis HOM05D001880 ORTHO05D005098 1.1e-104 383.6 215 91.2
MELO3C003579.2 Cucumis melo HOM05D001880 ORTHO05D005098 2.3e-104 382.5 215 90.7
arahy.Tifrunner.gnm1.ann1.0TS4QU Arachis hypogaea HOM05D001880 ORTHO05D005098 8.9e-104 380.6 215 89.8
arahy.Tifrunner.gnm1.ann1.I4CW6I Arachis hypogaea HOM05D001880 ORTHO05D005098 8.9e-104 380.6 215 89.8
Ciclev10009455m.g Citrus clementina HOM05D001880 ORTHO05D005098 4.4e-103 378.3 215 89.8
Gohir.D08G272200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 4.4e-103 378.3 215 90.2
Gorai.004G290600 Gossypium raimondii HOM05D001880 ORTHO05D005098 4.4e-103 378.3 215 90.2
Cfa013347 Carpinus fangiana HOM05D001880 ORTHO05D005098 9.8e-103 377.1 219 87.7
Glyma.04G080400 Glycine max HOM05D001880 ORTHO05D005098 9.8e-103 377.1 215 90.2
Sed0004320 Sechium edule HOM05D001880 ORTHO05D005098 9.8e-103 377.1 215 89.8
VMungo1309G0461 Vigna mungo HOM05D001880 ORTHO05D005098 9.8e-103 377.1 215 90.2
Gohir.A08G250700 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.3e-102 376.7 215 90.2
Duzib187G1109 Durio zibethinus HOM05D001880 ORTHO05D005098 2.2e-102 375.9 215 89.8
MD15G1097400 Malus domestica HOM05D001880 ORTHO05D005098 2.9e-102 375.6 215 90.7
Manes.16G065900 Manihot esculenta HOM05D001880 ORTHO05D005098 2.9e-102 375.6 215 88.8
Thecc.09G040200 Theobroma cacao HOM05D001880 ORTHO05D005098 2.9e-102 375.6 215 89.3
Nn3g18068 Nelumbo nucifera HOM05D001880 ORTHO05D005098 3.7e-102 375.2 215 89.8
Psat0s4721g0040 Pisum sativum HOM05D001880 ORTHO05D005098 6.4e-102 374.4 215 88.8
CANSAT25G1770 Cannabis sativa HOM05D001880 ORTHO05D005098 1.4e-101 373.2 215 88.8
Duzib150G0439 Durio zibethinus HOM05D001880 ORTHO05D005098 1.4e-101 373.2 215 88.8
MD08G1117900 Malus domestica HOM05D001880 ORTHO05D005098 1.4e-101 373.2 215 89.8
ATR0315G044 Amborella trichopoda HOM05D001880 ORTHO05D005098 2.4e-101 372.5 215 88.8
Lj1g0025868 Lotus japonicus HOM05D001880 ORTHO05D005098 2.4e-101 372.5 219 89.0
Eucgr.C01583 Eucalyptus grandis HOM05D001880 ORTHO05D005098 3.2e-101 372.1 215 87.9
Gorai.001G028600 Gossypium raimondii HOM05D001880 ORTHO05D005098 4.1e-101 371.7 218 87.6
Glyma.06G082100 Glycine max HOM05D001880 ORTHO05D005098 5.4e-101 371.3 215 88.4
Gohir.A07G023800 Gossypium hirsutum HOM05D001880 ORTHO05D005098 5.4e-101 371.3 215 88.4
THA.LOC104799203 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 5.4e-101 371.3 215 87.4
Phvul.009G106500 Phaseolus vulgaris HOM05D001880 ORTHO05D005098 7.1e-101 370.9 215 87.4
Dinv14228 Davidia involucrata HOM05D001880 ORTHO05D005098 9.2e-101 370.5 215 88.8
THA.LOC104815053 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 9.2e-101 370.5 215 87.4
CSS0008123 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 1.6e-100 369.8 215 87.9
CSS0050171 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 1.6e-100 369.8 215 87.9
Gohir.D07G027400 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.6e-100 369.8 215 87.9
TAR626G0694 Trochodendron aralioides HOM05D001880 ORTHO05D005098 2.7e-100 369.0 215 87.4
vmacro07643 Vaccinium macrocarpon HOM05D001880 ORTHO05D005098 2.7e-100 369.0 215 87.4
Lalb_Chr08g0243251 Lupinus albus HOM05D001880 ORTHO05D005098 3.5e-100 368.6 215 88.4
PSO210G6462 Papaver somniferum HOM05D001880 ORTHO05D005098 3.5e-100 368.6 215 87.9
Medtr3g110022 Medicago truncatula HOM05D001880 ORTHO05D005098 6.0e-100 367.9 215 86.5
Potri.006G241900 Populus trichocarpa HOM05D001880 ORTHO05D005098 6.0e-100 367.9 215 87.4
TWI63G1366 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 6.0e-100 367.9 215 88.4
PSO210G1422 Papaver somniferum HOM05D001880 ORTHO05D005098 7.8e-100 367.5 215 87.4
Potri.018G037800 Populus trichocarpa HOM05D001880 ORTHO05D005098 7.8e-100 367.5 215 86.0
Atru.chr7.2156 Acer truncatum HOM05D001880 ORTHO05D005098 1.3e-99 366.7 215 86.5
CDE05G1188 Ceratophyllum demersum HOM05D001880 ORTHO05D005098 1.3e-99 366.7 215 87.9
Sed0015028 Sechium edule HOM05D001880 ORTHO05D005098 1.3e-99 366.7 215 87.0
Prupe.1G452200 Prunus persica HOM05D001880 ORTHO05D005098 1.7e-99 366.3 226 85.4
Nn2g11707 Nelumbo nucifera HOM05D001880 ORTHO05D005098 2.3e-99 365.9 215 87.4
Hma1.2p1_0422F.1_g150140 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 3.9e-99 365.2 215 86.0
Nitab4.5_0007240g0010 Nicotiana tabacum HOM05D001880 ORTHO05D005098 3.9e-99 365.2 215 86.0
Migut.A00247 Erythranthe guttata HOM05D001880 ORTHO05D005098 5.1e-99 364.8 215 86.0
TAR383G0375 Trochodendron aralioides HOM05D001880 ORTHO05D005098 5.1e-99 364.8 215 86.5
Manes.03G063100 Manihot esculenta HOM05D001880 ORTHO05D005098 6.6e-99 364.4 215 86.5
Nitab4.5_0000052g0180 Nicotiana tabacum HOM05D001880 ORTHO05D005098 6.6e-99 364.4 214 86.4
Sp6g32100 Schrenkiella parvula HOM05D001880 ORTHO05D005098 6.6e-99 364.4 215 85.1
TWI32G1114 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 6.6e-99 364.4 215 87.4
CAN.G21.29 Capsicum annuum HOM05D001880 ORTHO05D005098 1.1e-98 363.6 215 85.1
Peaxi162Scf00523g00111 Petunia axillaris HOM05D001880 ORTHO05D005098 1.1e-98 363.6 215 86.0
PGSC0003DMG400010834 Solanum tuberosum HOM05D001880 ORTHO05D005098 1.1e-98 363.6 215 85.6
Zm00001eb350500 Zea mays HOM05D001880 ORTHO05D005098 1.1e-98 363.6 215 84.7
BcaB01g05480 Brassica carinata HOM05D001880 ORTHO05D005098 1.5e-98 363.2 215 84.7
A03p05050 Brassica napus HOM05D001880 ORTHO05D005098 1.5e-98 363.2 215 84.7
BraA03t09839Z Brassica rapa HOM05D001880 ORTHO05D005098 1.5e-98 363.2 215 84.7
COL.COLO4_18693 Corchorus olitorius HOM05D001880 ORTHO05D005098 1.5e-98 363.2 215 86.5
C03p05780 Brassica napus HOM05D001880 ORTHO05D005098 1.9e-98 362.8 215 84.2
BolC3t13091H Brassica oleracea HOM05D001880 ORTHO05D005098 1.9e-98 362.8 215 84.2
HanXRQChr07g0188141 Helianthus annuus HOM05D001880 ORTHO05D005098 1.9e-98 362.8 215 86.0
Solyc08g068300.3 Solanum lycopersicum HOM05D001880 ORTHO05D005098 2.5e-98 362.5 215 85.6
Sopen08g022150 Solanum pennellii HOM05D001880 ORTHO05D005098 2.5e-98 362.5 215 85.6
Carub.0006s0996 Capsella rubella HOM05D001880 ORTHO05D005098 4.3e-98 361.7 215 83.7
Hma1.2p1_0140F.1_g063500 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 4.3e-98 361.7 215 86.0
Aqoxy7G03843 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 5.6e-98 361.3 215 84.7
Aqoxy7G01618 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 7.3e-98 360.9 215 85.6
Thhalv10014652m.g Eutrema salsugineum HOM05D001880 ORTHO05D005098 7.3e-98 360.9 215 83.7
AL6G22170 Arabidopsis lyrata HOM05D001880 ORTHO05D005098 9.5e-98 360.5 215 83.3
AT5G11500 Arabidopsis thaliana HOM05D001880 ORTHO05D005098 9.5e-98 360.5 215 83.3
C09p65340 Brassica napus HOM05D001880 ORTHO05D005098 9.5e-98 360.5 215 83.3
CARHR201720 Cardamine hirsuta HOM05D001880 ORTHO05D005098 9.5e-98 360.5 215 84.2
MSTRG.1651 Avicennia marina HOM05D001880 ORTHO05D005098 1.2e-97 360.1 215 85.1
MSTRG.25891 Avicennia marina HOM05D001880 ORTHO05D005098 1.2e-97 360.1 215 86.0
BcaB08g37053 Brassica carinata HOM05D001880 ORTHO05D005098 1.2e-97 360.1 215 83.3
Lalb_Chr11g0064351 Lupinus albus HOM05D001880 ORTHO05D005098 1.2e-97 360.1 215 85.1
A10p26250 Brassica napus HOM05D001880 ORTHO05D005098 1.6e-97 359.8 215 82.8
BraA10t44682Z Brassica rapa HOM05D001880 ORTHO05D005098 1.6e-97 359.8 215 82.8
BcaC04g19219 Brassica carinata HOM05D001880 ORTHO05D005098 2.8e-97 359.0 215 82.8
BolC9t59360H Brassica oleracea HOM05D001880 ORTHO05D005098 2.8e-97 359.0 215 82.8
Cc08_g09010 Coffea canephora HOM05D001880 ORTHO05D005098 2.8e-97 359.0 215 84.7
DCAR_000746 Daucus carota HOM05D001880 ORTHO05D005098 2.8e-97 359.0 215 85.1
DCAR_004495 Daucus carota HOM05D001880 ORTHO05D005098 3.6e-97 358.6 215 84.7
Gohir.D05G049500 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.1e-96 357.1 215 85.6
unitig_748.g7799 Utricularia gibba HOM05D001880 ORTHO05D005098 1.1e-96 357.1 215 82.8
HPP92_023949 Vanilla planifolia HOM05D001880 ORTHO05D005098 1.1e-96 357.1 215 83.3
BcaC03g13368 Brassica carinata HOM05D001880 ORTHO05D005098 1.4e-96 356.7 215 82.8
Gohir.A05G048200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 3.1e-96 355.5 215 85.1
PGR044G1166 Punica granatum HOM05D001880 ORTHO05D005098 3.1e-96 355.5 215 84.2
Gorai.009G050800 Gossypium raimondii HOM05D001880 ORTHO05D005098 5.2e-96 354.8 215 85.1
Cpa.g.sc78.78 Carica papaya HOM05D001880 ORTHO05D005098 6.8e-96 354.4 215 83.3
C02p05070 Brassica napus HOM05D001880 ORTHO05D005098 1.2e-95 353.6 215 81.9
SGA_v2.0_scaffold163G38091 Striga asiatica HOM05D001880 ORTHO05D005098 1.5e-95 353.2 220 83.6
Lalb_Chr23g0269461 Lupinus albus HOM05D001880 ORTHO05D005098 7.6e-95 350.9 215 83.3
TPR.G1376 Trifolium pratense HOM05D001880 ORTHO05D005098 1.7e-94 349.7 215 83.3
SalBow8G4639 Salvia bowleyana HOM05D001880 ORTHO05D005098 4.1e-93 345.1 216 82.4
GSVIVG01035667001 Vitis vinifera HOM05D001880 ORTHO05D005098 2.1e-92 342.8 198 89.9
BcaNung01928 Brassica carinata HOM05D001880 ORTHO05D005098 3.5e-92 342.0 220 80.0
SMO134G0016 Selaginella moellendorffii HOM05D001880 ORTHO05D005098 6.0e-92 341.3 215 78.6
Mapoly0042s0036 Marchantia polymorpha HOM05D001880 ORTHO05D005098 2.5e-90 335.9 215 78.6
SalBow4G0117 Salvia bowleyana HOM05D001880 ORTHO05D005098 7.3e-90 334.3 215 82.3
Rhsim03G0046500 Rhododendron simsii HOM05D001880 ORTHO05D005098 2.4e-88 329.3 215 80.5
FvH4_2g36060 Fragaria vesca HOM05D001880 ORTHO05D005098 3.1e-88 328.9 215 79.5
RcHm_v2.0_Chr6g0305791 Rosa chinensis HOM05D001880 ORTHO05D005098 3.1e-88 328.9 215 79.5
Lj8C597T7 Lonicera japonica HOM05D001880 ORTHO05D005098 1.7e-86 323.2 215 78.6
Aa31LG3G15700 Aethionema arabicum HOM05D001758 ORTHO05D005969 8.4e-86 320.9 215 77.7
BolC2t06461H Brassica oleracea HOM05D001880 ORTHO05D005098 1.4e-85 320.1 217 75.6
Hund19544 Selenicereus undatus HOM05D001880 ORTHO05D005098 1.9e-85 319.7 220 75.5
Os01g0750500 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 1.2e-84 317.0 215 73.5
CBR_g40963 Chara braunii HOM05D001880 ORTHO05D005098 4.6e-84 315.1 215 74.9
CBR_g39177 Chara braunii HOM05D001880 ORTHO05D005098 6.0e-84 314.7 215 75.3
SGA_v2.0_scaffold169G38642 Striga asiatica HOM05D001880 ORTHO05D005098 7.8e-84 314.3 215 77.2
Pp3c9_4250 Physcomitrium patens HOM05D001880 ORTHO05D005098 2.3e-83 312.8 215 74.0
ECA246G2183 Erigeron canadensis HOM05D001880 ORTHO05D004730 5.1e-83 311.6 214 75.7
Pp3c9_9290 Physcomitrium patens HOM05D001880 ORTHO05D005098 5.1e-83 311.6 215 73.5
Ca_15617_v3 Cicer arietinum L. HOM05D001880 ORTHO05D005098 1.6e-81 306.6 165 90.9
Oeu014654.1 Olea europaea HOM05D001880 ORTHO05D005098 4.8e-81 305.1 215 75.3
Lsat_1_v5_gn_5_34021 Lactuca sativa HOM05D001880 ORTHO05D005098 8.1e-81 304.3 215 75.3
QL12p026578 Quercus lobata HOM05D001880 ORTHO05D005098 1.4e-80 303.5 165 89.7
Dinv30256 Davidia involucrata HOM05D001880 ORTHO05D005098 4.0e-80 302.0 165 90.9
FAN27G1491 Fragaria x ananassa HOM05D001880 ORTHO05D005098 2.7e-76 289.3 215 72.6
FAN15G2674 Fragaria x ananassa HOM05D001880 ORTHO05D005098 1.0e-75 287.3 215 72.1
Sc09g0009110 Simmondsia chinensis HOM05D001880 ORTHO05D005098 1.3e-75 287.0 275 59.3
AUR62009327 Chenopodium quinoa HOM05D001880 ORTHO05D005098 1.8e-75 286.6 215 70.7
Oeu016233.2 Olea europaea HOM05D001880 ORTHO05D005098 5.6e-74 281.6 215 70.2
Gorai.011G152300 Gossypium raimondii HOM05D001880 ORTHO05D005098 7.4e-74 281.2 215 69.3
Zm00001eb153360 Zea mays HOM05D001880 ORTHO05D005098 9.6e-74 280.8 216 69.0
PSO832G1756 Papaver somniferum HOM05D001880 ORTHO05D005098 2.8e-73 279.3 216 70.4
EL10Ac2g04067 Beta vulgaris HOM05D001880 ORTHO05D005098 1.1e-72 277.3 215 70.2
Lj8C602T7 Lonicera japonica HOM05D001880 ORTHO05D005098 7.6e-71 271.2 215 69.3
Haze_21860 Corylus avellana HOM05D001880 ORTHO05D005098 1.3e-70 270.4 353 49.3
AUR62023014 Chenopodium quinoa HOM05D000682 ORTHO05D000510 1.9e-69 266.5 202 72.3
Rhsim03G0044500 Rhododendron simsii HOM05D001880 ORTHO05D005098 1.5e-66 256.9 179 78.8
Sabra18G0038400 Salix brachista HOM05D001880 ORTHO05D005098 7.4e-66 254.6 165 78.8
AagrBONN_evm.TU.Sc2ySwM_228.2603 Anthoceros agrestis HOM05D001880 ORTHO05D005098 4.0e-64 248.8 144 79.2
Ah.10g035220 Amaranthus hybridus HOM05D001880 ORTHO05D005098 1.3e-62 243.8 216 63.9
MCO11G833 Micromonas commoda HOM05D001880 ORTHO05D005098 1.0e-54 217.6 216 55.1
PRCOL_00004463 Prasinoderma coloniale HOM05D001880 ORTHO05D005098 2.5e-53 213.0 232 53.4
Cc00_g02820 Coffea canephora HOM05D001880 ORTHO05D005098 2.8e-49 199.5 108 83.3
Cc03_g15000 Coffea canephora HOM05D001880 ORTHO05D005098 2.8e-49 199.5 108 83.3
CSS0023199 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 8.2e-49 198.0 263 50.6
Cre06.g275300 Chlamydomonas reinhardtii HOM05D001880 ORTHO05D005098 1.9e-45 186.8 177 59.3
MBI04_g19163_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D005098 4.2e-45 185.7 135 76.3
Cfa026630 Carpinus fangiana HOM05D004477 ORTHO05D005615 6.1e-44 181.8 204 50.0
HPP92_023928 Vanilla planifolia HOM05D001880 ORTHO05D005098 1.8e-40 170.2 134 70.1
Lj7A706G42 Lonicera japonica HOM05D001880 ORTHO05D001339 2.5e-37 159.8 117 67.5
Sabra06G0189300 Salix brachista HOM05D001880 ORTHO05D005098 9.4e-37 157.9 81 88.9
Pp3c9_8200 Physcomitrium patens HOM05D001880 ORTHO05D005098 1.6e-36 157.1 113 70.8
HPP92_023929 Vanilla planifolia HOM05D001880 ORTHO05D005098 1.6e-36 157.1 84 85.7
Lj7A706T45 Lonicera japonica HOM05D001880 ORTHO05D005098 6.1e-36 155.2 113 74.3
Zm00001eb036010 Zea mays HOM05D001880 ORTHO05D005098 5.7e-34 148.7 100 82.0
Zm00001eb052320 Zea mays HOM05D001880 ORTHO05D005098 5.7e-34 148.7 100 82.0
Zm00001eb071380 Zea mays HOM05D001880 ORTHO05D005098 5.7e-34 148.7 100 82.0
Zm00001eb291550 Zea mays HOM05D001880 ORTHO05D005098 5.7e-34 148.7 100 82.0
Zm00001eb391830 Zea mays HOM05D001880 ORTHO05D005098 5.7e-34 148.7 100 82.0
Os05g0221400 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 1.7e-33 147.1 81 84.0
Cc00_g34580 Coffea canephora HOM05D001880 ORTHO05D005098 1.3e-25 120.9 71 73.2
Gorai.011G178000 Gossypium raimondii HOM05D001880 ORTHO05D005098 4.7e-20 102.4 73 80.8
CSS0036439 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 4.0e-19 99.4 63 84.1
Gorai.012G085200 Gossypium raimondii HOM05D001880 ORTHO05D005098 7.5e-18 95.1 67 80.6
Gorai.011G118500 Gossypium raimondii HOM05D001880 ORTHO05D013650 2.0e-10 70.5 39 74.4
Gorai.002G175500 Gossypium raimondii HOM05D001035 ORTHO05D013650 7.5e-10 68.6 39 71.8
SalBow5G0200 Salvia bowleyana HOM05D001880 ORTHO05D355852 2.4e-08 63.5 48 66.7
SalBow8G1849 Salvia bowleyana HOM05D001880 ORTHO05D363534 2.4e-08 63.5 48 66.7
SalBow8G2043 Salvia bowleyana HOM05D001880 ORTHO05D356500 2.4e-08 63.5 48 66.7
SalBow6G5594 Salvia bowleyana HOM05D001880 ORTHO05D357349 9.2e-08 61.6 48 64.6


User provided reference genes

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