Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 0.0e+00 2629.4 1302 100.0
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 0.0e+00 1632.5 1362 64.0
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 0.0e+00 1625.9 1308 66.0
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 0.0e+00 1610.9 1315 65.9
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 0.0e+00 1526.9 1313 63.1
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 1.9e-256 890.2 1314 41.9
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 3.1e-246 856.3 1308 40.7
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 1.9e-243 847.0 1318 41.9
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 3.9e-241 839.3 1334 41.8
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 9.6e-240 834.7 1333 41.3
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 1.3e-239 834.3 1318 40.1
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 1.4e-235 820.8 1322 41.4
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 5.5e-235 818.9 1318 40.5
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 3.5e-234 816.2 1321 40.8
Duzib168G2343 Durio zibethinus HOM05D004021 ORTHO05D003767 9.6e-232 808.1 1262 40.8
FAN20G2231 Fragaria x ananassa HOM05D004021 ORTHO05D003767 2.8e-231 806.6 1341 40.4
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 5.3e-230 802.4 1342 40.1
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 5.3e-230 802.4 1342 40.1
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 4.5e-229 799.3 1327 40.5
FAN15G2992 Fragaria x ananassa HOM05D004021 ORTHO05D003767 3.8e-228 796.2 1337 40.0
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 1.5e-224 784.3 1323 40.4
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 9.6e-224 781.6 1335 40.1
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 1.0e-220 771.5 1310 39.7
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 6.1e-218 762.3 1373 37.7
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 6.7e-217 758.8 1317 38.7
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 1.4e-214 751.1 1358 39.5
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 9.0e-214 748.4 1317 38.3
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 2.5e-211 740.3 1284 38.5
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 6.1e-210 735.7 1283 38.2
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 3.9e-209 733.0 1282 38.0
Gohir.D07G026600 Gossypium hirsutum HOM05D004021 ORTHO05D003767 5.5e-203 712.6 1257 37.9
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 4.5e-189 666.4 1337 36.8
TAR383G0364 Trochodendron aralioides HOM05D004021 ORTHO05D003767 5.9e-189 666.0 1426 35.6
Glyma.06G083500 Glycine max HOM05D004021 ORTHO05D003767 8.6e-172 609.0 1291 36.6
Lj1g0012897 Lotus japonicus HOM05D004021 ORTHO05D003767 1.7e-167 594.7 1297 36.4
TWI63G0612 Tripterygium wilfordii HOM05D004021 ORTHO05D003767 3.7e-167 593.6 1305 33.4
Glyma.04G081800 Glycine max HOM05D004021 ORTHO05D003767 3.2e-166 590.5 1290 36.3
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 4.1e-166 590.1 1316 34.7
VMungo1309G0329 Vigna mungo HOM05D004021 ORTHO05D003767 7.0e-166 589.3 1303 35.5
Medtr3g110132 Medicago truncatula HOM05D004021 ORTHO05D003767 9.5e-163 578.9 1293 35.3
MD15G1096000 Malus domestica HOM05D004021 ORTHO05D003767 9.8e-160 568.9 1110 37.9
Phvul.009G107600 Phaseolus vulgaris HOM05D004021 ORTHO05D003767 1.7e-159 568.2 1295 35.1
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 2.4e-158 564.3 1345 34.9
Medtr3g110082 Medicago truncatula HOM05D004021 ORTHO05D003767 1.2e-157 562.0 1293 35.0
TPR.G1392 Trifolium pratense HOM05D004021 ORTHO05D003767 7.8e-157 559.3 1294 35.3
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 1.3e-156 558.5 1341 33.0
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 3.6e-154 550.4 1055 36.3
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 2.1e-149 534.6 1315 32.5
Ca_15608_v3 Cicer arietinum L. HOM05D004021 ORTHO05D003767 1.0e-148 532.3 1294 34.6
Lalb_Chr11g0064441 Lupinus albus HOM05D004021 ORTHO05D003767 1.2e-146 525.4 1285 34.2
Lalb_Chr01g0011141 Lupinus albus HOM05D004021 ORTHO05D003767 1.4e-145 521.9 1292 34.0
ClCG11G015210 Citrullus lanatus HOM05D004021 ORTHO05D003767 8.9e-145 519.2 1314 32.8
Psat5g022840 Pisum sativum HOM05D004021 ORTHO05D003767 1.7e-143 515.0 1297 32.9
Atru.chr7.2140 Acer truncatum HOM05D004021 ORTHO05D003767 3.2e-142 510.8 813 40.5
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 2.7e-141 507.7 1319 31.2
Psat5g022920 Pisum sativum HOM05D004021 ORTHO05D003767 2.7e-141 507.7 1296 33.0
arahy.Tifrunner.gnm1.ann1.QM1LQ0 Arachis hypogaea HOM05D004021 ORTHO05D003767 1.1e-139 502.3 1312 33.4
Lalb_Chr08g0243171 Lupinus albus HOM05D004021 ORTHO05D003767 7.6e-136 489.6 1294 33.2
Rhsim07G0152700 Rhododendron simsii HOM05D004021 ORTHO05D003767 1.4e-129 468.8 1315 31.6
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 1.3e-124 452.2 1313 31.1
Lalb_Chr11g0064431 Lupinus albus HOM05D004021 ORTHO05D003767 1.2e-117 429.1 1290 30.8
CsaV3_2G030990 Cucumis sativus L. HOM05D004021 ORTHO05D003767 2.9e-111 407.9 1317 30.1
ClCG08G012320 Citrullus lanatus HOM05D004021 ORTHO05D003767 3.8e-111 407.5 1321 30.0
MELO3C011152.2 Cucumis melo HOM05D004021 ORTHO05D003767 1.0e-108 399.4 1313 29.9
Lj8A589G31 Lonicera japonica HOM05D004021 ORTHO05D003767 1.3e-108 399.1 1331 29.2
Sed0002796 Sechium edule HOM05D004021 ORTHO05D003767 5.1e-108 397.1 1312 29.7
vmacro05366 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 4.8e-106 390.6 1264 30.2
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 3.8e-103 380.9 1304 29.1
Nn2g11674 Nelumbo nucifera HOM05D004021 ORTHO05D003767 4.2e-102 377.5 1413 28.1
THA.LOC104814779 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 2.1e-101 375.2 1315 27.9
Eucgr.C02901 Eucalyptus grandis HOM05D004021 ORTHO05D003767 6.3e-98 363.6 1287 28.1
Nn3g18104 Nelumbo nucifera HOM05D004021 ORTHO05D003767 5.5e-94 350.5 1322 28.1
TAR626G0792 Trochodendron aralioides HOM05D004021 ORTHO05D003767 1.1e-89 336.3 570 39.8
PGR044G0442 Punica granatum HOM05D004021 ORTHO05D003767 3.1e-81 308.1 1361 27.5
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 1.6e-80 305.8 1298 27.3
Cpa.g.sc7.255 Carica papaya HOM05D004021 ORTHO05D003767 4.5e-80 304.3 560 37.9
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 6.5e-79 300.4 1310 27.5
Carub.0006s1000 Capsella rubella HOM05D004021 ORTHO05D003767 1.6e-77 295.8 1298 27.6
Nitab4.5_0000664g0210 Nicotiana tabacum HOM05D004021 ORTHO05D003767 3.0e-76 291.6 1321 27.0
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 3.3e-75 288.1 1329 26.0
AT5G11530 Arabidopsis thaliana HOM05D004021 ORTHO05D003767 1.4e-73 282.7 1300 27.3
Sp6g32070 Schrenkiella parvula HOM05D004021 ORTHO05D003767 4.1e-73 281.2 1306 27.8
Nitab4.5_0000664g0250 Nicotiana tabacum HOM05D004021 ORTHO05D003767 7.0e-73 280.4 1319 26.3
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 2.7e-72 278.5 1325 26.6
Cpa.g.sc7.256 Carica papaya HOM05D004021 ORTHO05D003767 5.9e-72 277.3 397 42.1
MBI01_g30860_MAGBIO Magnolia biondii HOM05D004021 ORTHO05D003767 5.9e-72 277.3 1416 25.7
Nitab4.5_0001567g0150 Nicotiana tabacum HOM05D004021 ORTHO05D003767 4.7e-69 267.7 1314 26.6
CAN.G309.87 Capsicum annuum HOM05D004021 ORTHO05D003767 1.8e-65 255.8 1312 26.2
arahy.Tifrunner.gnm1.ann1.E545QA Arachis hypogaea HOM05D004021 ORTHO05D003767 1.7e-63 249.2 1295 26.7
FAN20G1338 Fragaria x ananassa HOM05D004021 ORTHO05D003767 4.2e-62 244.6 447 38.7
PGSC0003DMG401018585 Solanum tuberosum HOM05D004021 ORTHO05D003767 5.5e-62 244.2 1315 25.8
FAN09G3084 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.2e-61 243.0 447 38.5
FAN02G4319 Fragaria x ananassa HOM05D004021 ORTHO05D003767 6.1e-61 240.7 447 38.3
Atru.chr7.2139 Acer truncatum HOM05D004021 ORTHO05D003767 2.0e-59 235.7 272 48.9
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 2.8e-58 231.9 1292 26.0
Aa31LG11G4580 Aethionema arabicum HOM05D004021 ORTHO05D003767 1.8e-57 229.2 1269 24.9
Dinv38014 Davidia involucrata HOM05D004021 ORTHO05D003767 7.0e-57 227.3 1226 25.8
Eucgr.E03518 Eucalyptus grandis HOM05D004021 ORTHO05D003767 3.5e-56 224.9 761 28.5
Lalb_Chr24g0396931 Lupinus albus HOM05D004021 ORTHO05D003767 1.1e-54 219.9 1332 24.7
Solyc11g071250.3 Solanum lycopersicum HOM05D004021 ORTHO05D003767 2.5e-54 218.8 1342 25.4
Sopen11g028940 Solanum pennellii HOM05D004021 ORTHO05D003767 2.1e-53 215.7 1333 25.4
CARHR201690 Cardamine hirsuta HOM05D004021 ORTHO05D003767 4.0e-52 211.5 1297 24.7
FAN13G2039 Fragaria x ananassa HOM05D004021 ORTHO05D003767 6.4e-50 204.1 327 40.7
BcaNung01931 Brassica carinata HOM05D004021 ORTHO05D003767 8.3e-50 203.8 1306 25.3
CSS0003638 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 2.4e-49 202.2 1357 23.5
BcaC03g13370 Brassica carinata HOM05D004021 ORTHO05D003767 3.2e-49 201.8 1297 26.0
C02p05090 Brassica napus HOM05D004021 ORTHO05D003767 3.2e-49 201.8 1297 26.0
Hund03406 Selenicereus undatus HOM05D012164 ORTHO05D003767 3.2e-49 201.8 1361 24.8
BolC2t06463H Brassica oleracea HOM05D004021 ORTHO05D003767 2.7e-48 198.7 1300 25.9
BraA02t05084Z Brassica rapa HOM05D004021 ORTHO05D003767 3.9e-47 194.9 1292 25.8
A02p01040 Brassica napus HOM05D004021 ORTHO05D003767 5.0e-47 194.5 1292 25.9
FAN20G0872 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.1e-46 193.4 447 34.0
BcaNung03924 Brassica carinata HOM05D004021 ORTHO05D003767 5.2e-44 184.5 1294 24.4
BolC7t44742H Brassica oleracea HOM05D004021 ORTHO05D003767 1.5e-43 183.0 1294 24.4
vmacro18883 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 1.5e-43 183.0 1317 23.5
C07p42110 Brassica napus HOM05D004021 ORTHO05D003767 2.6e-43 182.2 1294 24.3
Sc09g0009160 Simmondsia chinensis HOM05D012164 ORTHO05D003767 1.3e-42 179.9 1303 23.8
DCAR_007709 Daucus carota HOM05D004021 ORTHO05D003767 3.7e-42 178.3 1280 23.5
Lalb_Chr22g0352261 Lupinus albus HOM05D004021 ORTHO05D003767 3.0e-39 168.7 702 28.5
BraA06t26563Z Brassica rapa HOM05D004021 ORTHO05D003767 1.9e-38 166.0 1293 24.4
A06p36400 Brassica napus HOM05D004021 ORTHO05D003767 3.3e-38 165.2 1291 24.4
Nitab4.5_0002178g0010 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.4e-36 159.8 946 24.3
TAR626G0813 Trochodendron aralioides HOM05D004021 ORTHO05D003767 2.0e-35 156.0 260 41.2
Dinv30474 Davidia involucrata HOM05D004021 ORTHO05D003767 4.9e-34 151.4 836 25.7
PSO782G1327 Papaver somniferum HOM05D004021 ORTHO05D003767 6.4e-34 151.0 1264 23.3
Oeu012193.1 Olea europaea HOM05D004021 ORTHO05D003767 3.2e-33 148.7 1345 22.8
Lj8P589T23 Lonicera japonica HOM05D004021 ORTHO05D003767 6.0e-32 144.4 580 28.1
Oeu031555.1 Olea europaea HOM05D004021 ORTHO05D003767 6.0e-32 144.4 1337 23.3
FAN05G2999 Fragaria x ananassa HOM05D004021 ORTHO05D003767 3.3e-30 138.7 277 36.1
EL10Ac2g04051 Beta vulgaris HOM05D012164 ORTHO05D003767 9.5e-30 137.1 1386 23.9
Cpa.g.sc7.254 Carica papaya HOM05D004021 ORTHO05D003767 1.6e-29 136.3 115 53.9
SHI18661 Sapria himalayana HOM05D004021 ORTHO05D003767 3.1e-28 132.1 1261 22.4
Nitab4.5_0000500g0270 Nicotiana tabacum HOM05D004021 ORTHO05D003767 9.9e-27 127.1 988 23.4
Hund19530 Selenicereus undatus HOM05D012164 ORTHO05D003767 2.4e-25 122.5 1306 21.6
Rhsim08G0224000 Rhododendron simsii HOM05D004021 ORTHO05D003767 4.1e-25 121.7 628 25.2
SalBow1G4226 Salvia bowleyana HOM05D004021 ORTHO05D003767 4.1e-25 121.7 1102 23.6
BolC3t13094H Brassica oleracea HOM05D004021 ORTHO05D003767 1.6e-24 119.8 581 27.4
Peaxi162Scf00657g00058 Petunia axillaris HOM05D004021 ORTHO05D003767 1.6e-24 119.8 1395 22.7
Lj8A589T33 Lonicera japonica HOM05D004021 ORTHO05D003767 4.6e-24 118.2 214 37.9
TAR626G1566 Trochodendron aralioides HOM05D004021 ORTHO05D003767 9.6e-22 110.5 362 29.3
Lalb_Chr14g0372341 Lupinus albus HOM05D004021 ORTHO05D003767 4.7e-21 108.2 217 37.8
Migut.E01516 Erythranthe guttata HOM05D004021 ORTHO05D003767 1.4e-20 106.7 115 47.0
ECA233G1986 Erigeron canadensis HOM05D004021 ORTHO05D003767 9.9e-19 100.5 1298 22.7
Lj4g0004076 Lotus japonicus HOM05D032889 ORTHO05D003767 4.9e-18 98.2 209 33.5
SalBow4G0344 Salvia bowleyana HOM05D004021 ORTHO05D003767 3.2e-17 95.5 136 39.0
Aqoxy7G01578 Aquilegia oxysepala HOM05D065736 ORTHO05D038511 4.2e-17 95.1 398 28.4
Nitab4.5_0000406g0040 Nicotiana tabacum HOM05D004021 ORTHO05D003767 5.4e-17 94.7 1307 22.0
SGA_v2.0_scaffold163G38081 Striga asiatica HOM05D004021 ORTHO05D003767 7.1e-17 94.4 135 39.3
Migut.A00223 Erythranthe guttata HOM05D004021 ORTHO05D003767 2.1e-16 92.8 147 34.7
SGA_v2.0_scaffold169G38653 Striga asiatica HOM05D004021 ORTHO05D003767 3.5e-16 92.0 108 49.1
MSTRG.14021 Avicennia marina HOM05D004021 ORTHO05D003767 6.0e-16 91.3 108 43.5
MSTRG.1655 Avicennia marina HOM05D004021 ORTHO05D003767 7.8e-16 90.9 106 43.4
AUR62041723 Chenopodium quinoa HOM05D012164 ORTHO05D003767 7.8e-16 90.9 1069 23.5
DCAR_003118 Daucus carota HOM05D004021 ORTHO05D003767 1.3e-15 90.1 142 34.5
BcaB01g05477 Brassica carinata HOM05D004021 ORTHO05D003767 2.3e-15 89.4 98 48.0
BraA03t09842Z Brassica rapa HOM05D004021 ORTHO05D003767 3.0e-15 89.0 98 48.0
Atru.chr7.2138 Acer truncatum HOM05D004021 ORTHO05D003767 5.1e-15 88.2 110 46.4
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 8.7e-15 87.4 85 49.4
Lalb_Chr22g0352251 Lupinus albus HOM05D004021 ORTHO05D003767 1.5e-14 86.7 314 26.1
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 4.3e-14 85.1 85 48.2
ATR0315G010 Amborella trichopoda HOM05D004021 ORTHO05D003767 7.3e-14 84.3 159 37.1
AUR62009309 Chenopodium quinoa HOM05D012164 ORTHO05D003767 6.2e-13 81.3 244 29.9
unitig_578.g16592 Utricularia gibba HOM05D004021 ORTHO05D003767 3.1e-12 79.0 132 34.1
BcaNung04838 Brassica carinata HOM05D004021 ORTHO05D003767 9.0e-12 77.4 256 32.0
Lsat_1_v5_gn_6_64101 Lactuca sativa HOM05D004021 ORTHO05D003767 9.0e-12 77.4 1288 21.7
Cc08_g09190 Coffea canephora HOM05D004021 ORTHO05D003767 2.6e-11 75.9 269 28.3
Thhalv10015703m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 2.6e-11 75.9 83 39.8
SEGI_07029 Sequoiadendron giganteum HOM05D004021 ORTHO05D003767 2.6e-11 75.9 92 37.0
CDE05G1483 Ceratophyllum demersum HOM05D050580 ORTHO05D003767 3.4e-11 75.5 107 36.4
Ah.10g035100 Amaranthus hybridus HOM05D012164 ORTHO05D003767 5.8e-11 74.7 82 45.1
Glyma.17G195000 Glycine max HOM05D004021 ORTHO05D003767 1.3e-10 73.6 267 28.5
Lsat_1_v5_gn_4_94561 Lactuca sativa HOM05D004021 ORTHO05D003767 2.2e-10 72.8 224 29.5
HanXRQChr09g0276591 Helianthus annuus HOM05D004021 ORTHO05D003767 6.4e-10 71.2 496 25.4
Aqoxy4G01254 Aquilegia oxysepala HOM05D065736 ORTHO05D038511 1.1e-09 70.5 412 24.5
unitig_26.g9789 Utricularia gibba HOM05D004021 ORTHO05D003767 1.9e-09 69.7 85 37.6
CDE05G1167 Ceratophyllum demersum HOM05D004021 ORTHO05D003767 2.4e-09 69.3 92 39.1
Ah.16g105370 Amaranthus hybridus HOM05D012164 ORTHO05D003767 5.4e-09 68.2 70 45.7
unitig_85.g27153 Utricularia gibba HOM05D004021 ORTHO05D003767 2.7e-08 65.9 112 35.7
HPP92_026866 Vanilla planifolia HOM05D004021 ORTHO05D003767 3.5e-08 65.5 67 41.8
Oeu015740.1 Olea europaea HOM05D004021 ORTHO05D003767 1.0e-07 63.9 258 26.7
Os01g0229300 Oryza sativa ssp. japonica HOM05D018893 ORTHO05D020945 1.3e-07 63.5 61 45.9
SEGI_37840 Sequoiadendron giganteum HOM05D028836 ORTHO05D003767 3.9e-07 62.0 83 37.3
Dinv10761 Davidia involucrata HOM05D024977 ORTHO05D003767 1.5e-06 60.1 69 42.0
Dinv30643 Davidia involucrata HOM05D024977 ORTHO05D003767 1.5e-06 60.1 69 42.0
Zm00001eb417870 Zea mays HOM05D018893 ORTHO05D020945 9.6e-06 57.4 98 35.7


User provided reference genes

Program Settings