Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G205500 Carya illinoinensis HOM05D003951 ORTHO05D020105 2.5e-43 178.3 86 100.0
Cfa013355 Carpinus fangiana HOM05D003951 ORTHO05D005378 8.0e-26 120.2 75 77.3
Medtr3g110140 Medicago truncatula HOM05D003951 ORTHO05D005378 5.2e-25 117.5 71 80.3
TPR.G1335 Trifolium pratense HOM05D003951 ORTHO05D005378 5.2e-25 117.5 71 80.3
AL6G22230 Arabidopsis lyrata HOM05D003951 ORTHO05D005378 6.7e-25 117.1 71 80.3
AT5G11560 Arabidopsis thaliana HOM05D003951 ORTHO05D005378 6.7e-25 117.1 71 80.3
Lalb_Chr23g0269551 Lupinus albus HOM05D003951 ORTHO05D005378 8.8e-25 116.7 71 80.3
Ca_15606_v3 Cicer arietinum L. HOM05D003951 ORTHO05D005378 1.5e-24 115.9 71 77.5
Sp6g32040 Schrenkiella parvula HOM05D003951 ORTHO05D005378 1.5e-24 115.9 70 82.9
arahy.Tifrunner.gnm1.ann1.6KB6B4 Arachis hypogaea HOM05D003951 ORTHO05D005378 2.0e-24 115.5 71 78.9
arahy.Tifrunner.gnm1.ann1.ZA6ZKK Arachis hypogaea HOM05D003951 ORTHO05D005378 2.0e-24 115.5 71 78.9
BcaNung01934 Brassica carinata HOM05D003951 ORTHO05D005378 2.0e-24 115.5 71 80.3
A10p26200 Brassica napus HOM05D003951 ORTHO05D005378 2.0e-24 115.5 71 77.5
BraA10t44677Z Brassica rapa HOM05D003951 ORTHO05D005378 2.0e-24 115.5 71 77.5
Cpa.g.sc7.257 Carica papaya HOM05D003951 ORTHO05D005378 2.0e-24 115.5 72 75.0
Psat5g022720 Pisum sativum HOM05D003951 ORTHO05D005378 2.0e-24 115.5 71 77.5
BolC9t59353H Brassica oleracea HOM05D003951 ORTHO05D005378 3.3e-24 114.8 71 76.1
CiPaw.08G024600 Carya illinoinensis HOM05D003951 ORTHO05D005378 3.3e-24 114.8 72 83.3
Thhalv10012570m.g Eutrema salsugineum HOM05D003951 ORTHO05D005378 3.3e-24 114.8 71 80.3
BcaB08g37043 Brassica carinata HOM05D003951 ORTHO05D005378 4.4e-24 114.4 71 77.5
Carub.0006s1003 Capsella rubella HOM05D003951 ORTHO05D005378 4.4e-24 114.4 71 78.9
BcaC03g13375 Brassica carinata HOM05D003951 ORTHO05D005378 5.7e-24 114.0 71 78.9
C02p05210 Brassica napus HOM05D003951 ORTHO05D005378 5.7e-24 114.0 71 78.9
BolC2t06471H Brassica oleracea HOM05D003951 ORTHO05D005378 5.7e-24 114.0 71 78.9
VMungo1309G1090 Vigna mungo HOM05D003951 ORTHO05D005378 5.7e-24 114.0 71 77.5
Atru.chr7.2135 Acer truncatum HOM05D003951 ORTHO05D005378 7.5e-24 113.6 71 80.3
BcaC04g19214 Brassica carinata HOM05D003951 ORTHO05D005378 7.5e-24 113.6 71 74.6
C09p65250 Brassica napus HOM05D003951 ORTHO05D005378 7.5e-24 113.6 71 74.6
CARHR201660 Cardamine hirsuta HOM05D003951 ORTHO05D005378 9.7e-24 113.2 70 80.0
QL12p029450 Quercus lobata HOM05D003951 ORTHO05D005378 9.7e-24 113.2 71 76.1
Phvul.009G107800 Phaseolus vulgaris HOM05D003951 ORTHO05D005378 1.7e-23 112.5 71 76.1
Lalb_Chr08g0243161 Lupinus albus HOM05D003951 ORTHO05D005378 2.2e-23 112.1 70 80.0
Glyma.04G082000 Glycine max HOM05D003951 ORTHO05D005378 2.8e-23 111.7 70 77.1
Glyma.06G083700 Glycine max HOM05D003951 ORTHO05D005378 2.8e-23 111.7 71 76.1
THA.LOC104814774 Tarenaya hassleriana HOM05D003951 ORTHO05D005378 1.1e-22 109.8 70 78.6
Sc23g0005190 Simmondsia chinensis HOM05D003951 ORTHO05D005378 1.4e-22 109.4 70 75.7
CSS0015540 Camellia sinensis var. sinensis HOM05D003951 ORTHO05D005378 1.8e-22 109.0 71 77.5
Dinv30270 Davidia involucrata HOM05D003951 ORTHO05D005378 1.8e-22 109.0 70 80.0
Prupe.1G450600 Prunus persica HOM05D003951 ORTHO05D005378 2.4e-22 108.6 74 70.3
Actinidia14668 Actinidia chinensis HOM05D003951 ORTHO05D005378 4.1e-22 107.8 70 75.7
EL10Ac2g04048 Beta vulgaris HOM05D003951 ORTHO05D005378 7.0e-22 107.1 70 72.9
MBI04_g14936_MAGBIO Magnolia biondii HOM05D003951 ORTHO05D005378 7.0e-22 107.1 71 76.1
Migut.J00480 Erythranthe guttata HOM05D003951 ORTHO05D005378 9.1e-22 106.7 71 73.2
Hma1.2p1_0590F.1_g185010 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 9.1e-22 106.7 70 75.7
SGA_v2.0_scaffold657G53382 Striga asiatica HOM05D003951 ORTHO05D005378 9.1e-22 106.7 71 73.2
MSTRG.19211 Avicennia marina HOM05D003951 ORTHO05D005378 1.2e-21 106.3 71 74.6
MD08G1115900 Malus domestica HOM05D003951 ORTHO05D005378 1.2e-21 106.3 72 69.4
Thecc.09G042400 Theobroma cacao HOM05D003951 ORTHO05D005378 1.2e-21 106.3 76 72.4
Manes.03G061800 Manihot esculenta HOM05D003951 ORTHO05D005378 1.6e-21 105.9 71 73.2
TWI32G0786 Tripterygium wilfordii HOM05D003951 ORTHO05D005378 1.6e-21 105.9 71 74.6
A02p01070 Brassica napus HOM05D003951 ORTHO05D005378 2.0e-21 105.5 71 73.2
BraA02t05087Z Brassica rapa HOM05D003951 ORTHO05D005378 2.0e-21 105.5 71 73.2
Lj1g0011830 Lotus japonicus HOM05D003951 ORTHO05D005378 2.0e-21 105.5 73 74.0
Ciclev10007348m.g Citrus clementina HOM05D003951 ORTHO05D005378 2.7e-21 105.1 72 75.0
MD15G1095600 Malus domestica HOM05D003951 ORTHO05D005378 2.7e-21 105.1 71 71.8
Nn3g18130 Nelumbo nucifera HOM05D003951 ORTHO05D020105 2.7e-21 105.1 85 63.5
Eucgr.C02905 Eucalyptus grandis HOM05D003951 ORTHO05D005378 3.5e-21 104.8 65 75.4
Nitab4.5_0000132g0420 Nicotiana tabacum HOM05D003951 ORTHO05D005378 3.5e-21 104.8 71 70.4
Nitab4.5_0010350g0010 Nicotiana tabacum HOM05D003951 ORTHO05D005378 3.5e-21 104.8 71 70.4
PGR044G0887 Punica granatum HOM05D003951 ORTHO05D005378 4.5e-21 104.4 70 72.9
GSVIVG01035648001 Vitis vinifera HOM05D003951 ORTHO05D005378 4.5e-21 104.4 71 76.1
Potri.018G039800 Populus trichocarpa HOM05D003951 ORTHO05D005378 5.9e-21 104.0 71 71.8
Sabra06G0187900 Salix brachista HOM05D003951 ORTHO05D005378 5.9e-21 104.0 71 71.8
Aa31LG3G15640 Aethionema arabicum HOM05D003951 ORTHO05D005378 7.7e-21 103.6 83 66.3
RcHm_v2.0_Chr6g0305971 Rosa chinensis HOM05D003951 ORTHO05D005378 1.0e-20 103.2 75 68.0
Duzib187G0774 Durio zibethinus HOM05D003951 ORTHO05D005378 1.3e-20 102.8 73 72.6
Potri.006G240300 Populus trichocarpa HOM05D003951 ORTHO05D005378 1.7e-20 102.4 71 70.4
SalBow3G1921 Salvia bowleyana HOM05D003951 ORTHO05D005378 1.7e-20 102.4 71 71.8
TAR383G0035 Trochodendron aralioides HOM05D003951 ORTHO05D005378 1.7e-20 102.4 70 71.4
TAR626G1232 Trochodendron aralioides HOM05D003951 ORTHO05D005378 1.7e-20 102.4 70 70.0
Actinidia15735 Actinidia chinensis HOM05D003951 ORTHO05D005378 2.9e-20 101.7 69 72.5
Nitab4.5_0004281g0080 Nicotiana tabacum HOM05D003951 ORTHO05D005378 2.9e-20 101.7 71 69.0
CANSAT25G2930 Cannabis sativa HOM05D003951 ORTHO05D005378 3.8e-20 101.3 72 73.6
CsaV3_2G030980 Cucumis sativus L. HOM05D003951 ORTHO05D005378 3.8e-20 101.3 75 68.0
Gohir.A06G094100 Gossypium hirsutum HOM05D003951 ORTHO05D005378 3.8e-20 101.3 72 69.4
Gohir.D06G093700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 3.8e-20 101.3 72 69.4
Gorai.010G108200 Gossypium raimondii HOM05D003951 ORTHO05D005378 3.8e-20 101.3 72 69.4
Cc06_g04830 Coffea canephora HOM05D003951 ORTHO05D005378 5.0e-20 100.9 59 79.7
Ah.16g105540 Amaranthus hybridus HOM05D003951 ORTHO05D005378 8.5e-20 100.1 70 67.1
AUR62041721 Chenopodium quinoa HOM05D003951 ORTHO05D005378 8.5e-20 100.1 70 70.0
AUR62043518 Chenopodium quinoa HOM05D003951 ORTHO05D005378 8.5e-20 100.1 70 70.0
FvH4_2g35850 Fragaria vesca HOM05D003951 ORTHO05D005378 8.5e-20 100.1 70 71.4
Sabra18G0039700 Salix brachista HOM05D003951 ORTHO05D005378 8.5e-20 100.1 71 69.0
Ah.16g105420 Amaranthus hybridus HOM05D003951 ORTHO05D005378 1.1e-19 99.8 70 68.6
MELO3C011151.2 Cucumis melo HOM05D003951 ORTHO05D005378 1.9e-19 99.0 75 66.7
FAN15G0863 Fragaria x ananassa HOM05D003951 ORTHO05D005378 1.9e-19 99.0 70 70.0
Hund19527 Selenicereus undatus HOM05D003951 ORTHO05D005378 1.9e-19 99.0 70 70.0
Aqoxy7G01531 Aquilegia oxysepala HOM05D003951 ORTHO05D005378 2.5e-19 98.6 70 68.6
FAN27G3265 Fragaria x ananassa HOM05D003951 ORTHO05D005378 2.5e-19 98.6 70 70.0
Solyc09g008610.4 Solanum lycopersicum HOM05D003951 ORTHO05D005378 2.5e-19 98.6 71 66.2
Sopen09g003410 Solanum pennellii HOM05D003951 ORTHO05D005378 2.5e-19 98.6 71 66.2
PGSC0003DMG400012982 Solanum tuberosum HOM05D003951 ORTHO05D005378 2.5e-19 98.6 71 66.2
ClCG08G012310 Citrullus lanatus HOM05D003951 ORTHO05D005378 3.2e-19 98.2 75 64.0
HanXRQChr08g0221151 Helianthus annuus HOM05D003951 ORTHO05D005378 3.2e-19 98.2 71 71.8
Nn2g11661 Nelumbo nucifera HOM05D003951 ORTHO05D005378 3.2e-19 98.2 70 65.7
Nitab4.5_0008726g0020 Nicotiana tabacum HOM05D003951 ORTHO05D005378 4.2e-19 97.8 72 70.8
Sed0024259 Sechium edule HOM05D003951 ORTHO05D005378 4.2e-19 97.8 73 65.8
CANSAT56G0789 Cannabis sativa HOM05D003951 ORTHO05D005378 5.5e-19 97.4 72 70.8
CANSAT56G2409 Cannabis sativa HOM05D003951 ORTHO05D005378 7.2e-19 97.1 72 69.4
FAN20G1017 Fragaria x ananassa HOM05D003951 ORTHO05D005378 7.2e-19 97.1 70 70.0
Oeu017004.2 Olea europaea HOM05D003951 ORTHO05D005378 7.2e-19 97.1 70 68.6
vmacro10453 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 7.2e-19 97.1 70 71.4
Oeu038879.1 Olea europaea HOM05D003951 ORTHO05D005378 9.4e-19 96.7 70 68.6
Gohir.A08G250500 Gossypium hirsutum HOM05D003951 ORTHO05D005378 1.6e-18 95.9 70 64.3
Gohir.D08G272000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 1.6e-18 95.9 70 64.3
PSO210G0075 Papaver somniferum HOM05D003951 ORTHO05D005378 1.6e-18 95.9 70 70.0
Gorai.004G290400 Gossypium raimondii HOM05D003951 ORTHO05D005378 2.1e-18 95.5 70 64.3
Gohir.A13G186000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 2.7e-18 95.1 71 71.8
Gohir.D13G192700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 2.7e-18 95.1 72 70.8
Sed0007642 Sechium edule HOM05D003951 ORTHO05D005378 2.7e-18 95.1 67 67.2
unitig_22.g5110 Utricularia gibba HOM05D003951 ORTHO05D020105 2.7e-18 95.1 71 62.0
PSO210G7231 Papaver somniferum HOM05D003951 ORTHO05D005378 4.7e-18 94.4 70 68.6
HPP92_003925 Vanilla planifolia HOM05D003951 ORTHO05D005378 4.7e-18 94.4 70 64.3
Gorai.013G218700 Gossypium raimondii HOM05D003951 ORTHO05D005378 6.1e-18 94.0 66 71.2
Lsat_1_v5_gn_6_63741 Lactuca sativa HOM05D003951 ORTHO05D005378 1.0e-17 93.2 72 66.7
Peaxi162Scf01195g00118 Petunia axillaris HOM05D003951 ORTHO05D005378 6.8e-17 90.5 63 68.3
CDE09G1231 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 1.2e-16 89.7 64 65.6
ATR0315G102 Amborella trichopoda HOM05D003951 ORTHO05D005378 2.6e-16 88.6 65 63.1
DCAR_004489 Daucus carota HOM05D003951 ORTHO05D005378 4.8e-15 84.3 91 50.5
Os05g0230600 Oryza sativa ssp. japonica HOM05D003951 ORTHO05D005378 1.1e-14 83.2 70 58.6
Zm00001eb350390 Zea mays HOM05D003951 ORTHO05D005378 1.1e-14 83.2 61 60.7
Zm00001eb284300 Zea mays HOM05D003951 ORTHO05D005378 1.8e-14 82.4 61 60.7
Pp3c24_6940 Physcomitrium patens HOM05D003951 ORTHO05D005378 7.0e-14 80.5 50 68.0
Mapoly0001s0045 Marchantia polymorpha HOM05D003951 ORTHO05D005378 2.7e-13 78.6 50 66.0
Lj8A588G18 Lonicera japonica HOM05D003951 ORTHO05D005378 3.5e-13 78.2 62 62.9
ECA233G3193 Erigeron canadensis HOM05D003951 ORTHO05D005378 5.9e-13 77.4 41 85.4
Haze_16526 Corylus avellana HOM05D003951 ORTHO05D005378 2.3e-12 75.5 39 87.2
Dinv14244 Davidia involucrata HOM05D003951 ORTHO05D005378 2.3e-12 75.5 43 81.4
BcaB01g05472 Brassica carinata HOM05D003951 ORTHO05D020105 1.5e-11 72.8 38 86.8
C03p05850 Brassica napus HOM05D003951 ORTHO05D020105 1.5e-11 72.8 38 86.8
BolC3t13097H Brassica oleracea HOM05D003951 ORTHO05D020105 1.5e-11 72.8 38 86.8
AagrBONN_evm.TU.Sc2ySwM_228.1359 Anthoceros agrestis HOM05D003951 ORTHO05D005378 2.1e-10 68.9 50 60.0
Lj7A704G78 Lonicera japonica HOM05D003951 ORTHO05D005378 2.1e-10 68.9 38 81.6
CDE02G1137 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 2.3e-09 65.5 38 73.7
CAN.G1759.1 Capsicum annuum HOM05D003951 ORTHO05D005378 3.0e-09 65.1 39 74.4
CBR_g46228 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-06 56.2 49 53.1
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 5.4e-06 54.3 28 89.3


User provided reference genes

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