Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G203700 Carya illinoinensis HOM05D007429 ORTHO05D003505 4.0e-39 164.5 94 100.0
CiPaw.08G026200 Carya illinoinensis HOM05D007429 ORTHO05D003505 4.8e-24 114.4 85 75.3
Prupe.1G447500 Prunus persica HOM05D007429 ORTHO05D003505 6.9e-23 110.5 94 68.1
Ciclev10010039m.g Citrus clementina HOM05D007429 ORTHO05D003505 3.4e-22 108.2 94 69.1
Gohir.A05G046400 Gossypium hirsutum HOM05D007429 ORTHO05D003505 5.8e-22 107.5 95 69.5
Duzib168G1390 Durio zibethinus HOM05D007429 ORTHO05D003505 2.2e-21 105.5 94 67.0
Cfa013372 Carpinus fangiana HOM05D007429 ORTHO05D003505 2.9e-21 105.1 85 69.4
TWI63G1379 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 4.9e-21 104.4 94 64.9
GSVIVG01035615001 Vitis vinifera HOM05D007429 ORTHO05D003505 4.9e-21 104.4 94 70.2
FvH4_2g35460 Fragaria vesca HOM05D007429 ORTHO05D003505 6.5e-21 104.0 95 66.3
Nn6g35292 Nelumbo nucifera HOM05D007429 ORTHO05D003505 3.2e-20 101.7 94 63.8
Thhalv10015136m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 9.3e-20 100.1 95 65.3
PGR031G3761 Punica granatum HOM05D007429 ORTHO05D003505 2.7e-19 98.6 94 62.8
CARHR201590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 3.5e-19 98.2 95 63.2
Potri.006G237800 Populus trichocarpa HOM05D007429 ORTHO05D003505 3.5e-19 98.2 85 67.1
Sed0003359 Sechium edule HOM05D007429 ORTHO05D003505 3.5e-19 98.2 94 58.5
CANSAT25G2095 Cannabis sativa HOM05D007429 ORTHO05D003505 4.6e-19 97.8 94 62.8
Dinv23374 Davidia involucrata HOM05D007429 ORTHO05D003505 7.9e-19 97.1 85 65.9
Sabra06G0186000 Salix brachista HOM05D007429 ORTHO05D003505 1.3e-18 96.3 85 65.9
Lalb_Chr23g0269661 Lupinus albus HOM05D007429 ORTHO05D003505 2.3e-18 95.5 94 59.6
PSO824G0083 Papaver somniferum HOM05D007429 ORTHO05D003505 5.1e-18 94.4 96 60.4
Sabra06G0186100 Salix brachista HOM05D008609 ORTHO05D010987 8.7e-18 93.6 85 64.7
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 1.1e-17 93.2 85 63.5
PSO173G0075 Papaver somniferum HOM05D007429 ORTHO05D003505 1.1e-17 93.2 96 59.4
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 1.5e-17 92.8 86 66.3
Manes.16G075000 Manihot esculenta HOM05D007429 ORTHO05D003505 2.5e-17 92.0 85 64.7
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 3.3e-17 91.7 86 65.1
Gohir.A08G249800 Gossypium hirsutum HOM05D007429 ORTHO05D003505 3.3e-17 91.7 92 62.0
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 3.3e-17 91.7 86 66.3
Hund19504 Selenicereus undatus HOM05D007429 ORTHO05D003505 3.3e-17 91.7 86 64.0
MELO3C003465.2 Cucumis melo HOM05D007429 ORTHO05D003505 5.7e-17 90.9 85 62.4
Cc08_g09700 Coffea canephora HOM05D007429 ORTHO05D003505 7.4e-17 90.5 95 60.0
Atru.chr7.2081 Acer truncatum HOM05D007429 ORTHO05D003505 9.7e-17 90.1 87 64.4
Gohir.D05G048100 Gossypium hirsutum HOM05D007429 ORTHO05D003505 1.3e-16 89.7 86 65.1
Gohir.D08G270600 Gossypium hirsutum HOM05D007429 ORTHO05D003505 1.6e-16 89.4 86 65.1
MD08G1113300 Malus domestica HOM05D007429 ORTHO05D003505 1.6e-16 89.4 85 61.2
Actinidia14679 Actinidia chinensis HOM05D007429 ORTHO05D003505 2.2e-16 89.0 85 67.1
Sopen08g020350 Solanum pennellii HOM05D007429 ORTHO05D003505 2.2e-16 89.0 85 60.0
RcHm_v2.0_Chr6g0306421 Rosa chinensis HOM05D007429 ORTHO05D003505 2.8e-16 88.6 85 62.4
CsaV3_3G048540 Cucumis sativus L. HOM05D007429 ORTHO05D003505 3.7e-16 88.2 85 60.0
Eucgr.C00555 Eucalyptus grandis HOM05D007429 ORTHO05D003505 3.7e-16 88.2 85 62.4
Eucgr.C00601 Eucalyptus grandis HOM05D007429 ORTHO05D003505 3.7e-16 88.2 85 62.4
FAN27G3027 Fragaria x ananassa HOM05D007429 ORTHO05D003505 3.7e-16 88.2 86 62.8
TWI34G0747 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 3.7e-16 88.2 85 63.5
AUR62009266 Chenopodium quinoa HOM05D007429 ORTHO05D003505 4.8e-16 87.8 85 60.0
AUR62042440 Chenopodium quinoa HOM05D007429 ORTHO05D003505 4.8e-16 87.8 85 60.0
MD15G1092600 Malus domestica HOM05D007429 ORTHO05D003505 4.8e-16 87.8 85 61.2
Solyc08g066520.3 Solanum lycopersicum HOM05D007429 ORTHO05D003505 4.8e-16 87.8 85 58.8
PGSC0003DMG402029142 Solanum tuberosum HOM05D007429 ORTHO05D003505 8.2e-16 87.0 85 58.8
ClCG11G015140 Citrullus lanatus HOM05D007429 ORTHO05D003505 1.1e-15 86.7 85 60.0
Dinv27908 Davidia involucrata HOM05D007429 ORTHO05D003505 1.4e-15 86.3 85 60.0
Nn8g39115 Nelumbo nucifera HOM05D007429 ORTHO05D003505 1.4e-15 86.3 92 58.7
Medtr3g109720 Medicago truncatula HOM05D007429 ORTHO05D003505 1.8e-15 85.9 85 60.0
TPR.G15111 Trifolium pratense HOM05D007429 ORTHO05D003505 1.8e-15 85.9 86 62.8
Actinidia13337 Actinidia chinensis HOM05D007429 ORTHO05D003505 2.4e-15 85.5 87 63.2
THA.LOC104811265 Tarenaya hassleriana HOM05D007429 ORTHO05D003505 3.1e-15 85.1 85 61.2
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 4.1e-15 84.7 85 58.8
BcaC04g19209 Brassica carinata HOM05D007429 ORTHO05D003505 5.3e-15 84.3 86 61.6
BolC9t59348H Brassica oleracea HOM05D007429 ORTHO05D003505 5.3e-15 84.3 86 61.6
AL6G22340 Arabidopsis lyrata HOM05D007429 ORTHO05D003505 6.9e-15 84.0 86 60.5
C09p65190 Brassica napus HOM05D007429 ORTHO05D003505 6.9e-15 84.0 86 61.6
CSS0002972 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 9.0e-15 83.6 85 60.0
Gorai.004G288500 Gossypium raimondii HOM05D007429 ORTHO05D003505 1.2e-14 83.2 80 63.8
arahy.Tifrunner.gnm1.ann1.ZH3G1A Arachis hypogaea HOM05D007429 ORTHO05D003505 1.5e-14 82.8 109 52.3
BcaC03g13383 Brassica carinata HOM05D007429 ORTHO05D003505 1.5e-14 82.8 86 60.5
A02p01120 Brassica napus HOM05D007429 ORTHO05D003505 1.5e-14 82.8 86 60.5
A10p26140 Brassica napus HOM05D007429 ORTHO05D003505 1.5e-14 82.8 86 60.5
C02p05300 Brassica napus HOM05D007429 ORTHO05D003505 1.5e-14 82.8 86 60.5
BolC2t06478H Brassica oleracea HOM05D007429 ORTHO05D003505 1.5e-14 82.8 86 60.5
BraA02t05091Z Brassica rapa HOM05D007429 ORTHO05D003505 1.5e-14 82.8 86 60.5
BraA10t44673Z Brassica rapa HOM05D007429 ORTHO05D003505 1.5e-14 82.8 86 60.5
Sp6g31990 Schrenkiella parvula HOM05D007429 ORTHO05D003505 1.5e-14 82.8 86 60.5
AT5G11630 Arabidopsis thaliana HOM05D007429 ORTHO05D003505 2.0e-14 82.4 86 58.1
BcaB08g37037 Brassica carinata HOM05D007429 ORTHO05D003505 2.6e-14 82.0 86 60.5
Glyma.06G086300 Glycine max HOM05D007429 ORTHO05D003505 2.6e-14 82.0 85 60.0
Carub.0006s1011 Capsella rubella HOM05D007429 ORTHO05D003505 3.4e-14 81.6 86 58.1
CSS0037511 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 5.9e-14 80.9 90 61.1
Oeu030718.1 Olea europaea HOM05D007429 ORTHO05D003505 7.7e-14 80.5 85 57.6
Phvul.009G110300 Phaseolus vulgaris HOM05D007429 ORTHO05D003505 2.2e-13 79.0 85 57.6
Glyma.04G084800 Glycine max HOM05D007429 ORTHO05D003505 2.9e-13 78.6 85 58.8
Sc09g0009340 Simmondsia chinensis HOM05D007429 ORTHO05D003505 2.9e-13 78.6 85 57.6
Thhalv10005203m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 5.0e-13 77.8 85 58.8
Manes.07G073601 Manihot esculenta HOM05D007429 ORTHO05D003505 6.5e-13 77.4 79 57.0
FAN20G1676 Fragaria x ananassa HOM05D002792 ORTHO05D003039 8.5e-13 77.0 80 61.2
SGA_v2.0_scaffold163G38070 Striga asiatica HOM05D007429 ORTHO05D003505 4.2e-12 74.7 120 43.3
arahy.Tifrunner.gnm1.ann1.R0MHDP Arachis hypogaea HOM05D007429 ORTHO05D003505 5.5e-12 74.3 109 48.6
Aa31LG3G15560 Aethionema arabicum HOM05D007429 ORTHO05D003505 9.4e-12 73.6 93 50.5
CARHR187590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 1.6e-11 72.8 85 55.3
Migut.E01531 Erythranthe guttata HOM05D007429 ORTHO05D003505 2.7e-11 72.0 85 52.9
Aqoxy7G01463 Aquilegia oxysepala HOM05D007429 ORTHO05D003505 6.1e-11 70.9 86 53.5
HanXRQChr02g0050601 Helianthus annuus HOM05D007429 ORTHO05D003505 7.9e-11 70.5 85 51.8
Lsat_1_v5_gn_6_22640 Lactuca sativa HOM05D007429 ORTHO05D003505 1.0e-10 70.1 85 52.9
Carub.0007s2409 Capsella rubella HOM05D006762 ORTHO05D003505 5.1e-10 67.8 98 49.0
AT4G17310 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 6.7e-10 67.4 98 49.0
Hund14549 Selenicereus undatus HOM05D006762 ORTHO05D003505 8.8e-10 67.0 98 43.9
CARHR173910 Cardamine hirsuta HOM05D006762 ORTHO05D003505 5.7e-09 64.3 110 43.6
ECA233G1441 Erigeron canadensis HOM05D007429 ORTHO05D003505 5.7e-09 64.3 85 54.1
FvH4_5g19060 Fragaria vesca HOM05D006762 ORTHO05D003505 5.7e-09 64.3 100 47.0
Cfa013373 Carpinus fangiana HOM05D007429 ORTHO05D003505 7.4e-09 63.9 40 87.5
Glyma.05G060100 Glycine max HOM05D006762 ORTHO05D003505 7.4e-09 63.9 97 49.5
Carub.0008s0032 Capsella rubella HOM05D006762 ORTHO05D003505 9.7e-09 63.5 64 56.2
CiPaw.12G051800 Carya illinoinensis HOM05D006762 ORTHO05D003505 9.7e-09 63.5 107 45.8
Lalb_Chr08g0243031 Lupinus albus HOM05D007429 ORTHO05D003505 1.3e-08 63.2 44 75.0
Prupe.5G068300 Prunus persica HOM05D006762 ORTHO05D003505 1.3e-08 63.2 103 46.6
Sopen08g027040 Solanum pennellii HOM05D006762 ORTHO05D003505 3.7e-08 61.6 103 42.7
Ca_15587_v3 Cicer arietinum L. HOM05D002792 ORTHO05D003039 4.8e-08 61.2 40 77.5
PGR031G2035 Punica granatum HOM05D006762 ORTHO05D003505 6.3e-08 60.8 101 44.6
VMungo1309G0862 Vigna mungo HOM05D007429 ORTHO05D003505 1.1e-07 60.1 35 88.6
DCAR_000754 Daucus carota HOM05D002792 ORTHO05D003039 1.4e-07 59.7 40 75.0
CDE02G4418 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 1.8e-07 59.3 85 48.2
HanXRQChr03g0087771 Helianthus annuus HOM05D006762 ORTHO05D003505 3.1e-07 58.5 122 41.0
Thecc.03G250100 Theobroma cacao HOM05D006762 ORTHO05D003505 3.1e-07 58.5 106 41.5
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 4.1e-07 58.2 96 44.8
TWI81G0572 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 9.1e-07 57.0 57 59.6
Glyma.17G142500 Glycine max HOM05D006762 ORTHO05D003505 1.2e-06 56.6 98 46.9
CDE04G0461 Ceratophyllum demersum HOM05D005822 ORTHO05D007267 1.5e-06 56.2 44 70.5
CSS0021998 Camellia sinensis var. sinensis HOM05D006762 ORTHO05D003505 4.5e-06 54.7 95 44.2
Lsat_1_v5_gn_6_90840 Lactuca sativa HOM05D006762 ORTHO05D003505 4.5e-06 54.7 94 43.6
ECA240G1429 Erigeron canadensis HOM05D006762 ORTHO05D003505 5.9e-06 54.3 92 50.0


User provided reference genes

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