Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G203500 Carya illinoinensis HOM05D006609 ORTHO05D008551 1.2e-147 526.6 270 100.0
Cfa013375 Carpinus fangiana HOM05D006609 ORTHO05D008551 4.3e-118 428.3 258 82.9
GSVIVG01035613001 Vitis vinifera HOM05D006609 ORTHO05D008551 2.5e-110 402.5 258 77.1
Haze_21897 Corylus avellana HOM05D006609 ORTHO05D008551 3.2e-105 385.6 258 76.7
Duzib168G0257 Durio zibethinus HOM05D006609 ORTHO05D008551 4.2e-105 385.2 259 75.7
Gohir.D05G047900 Gossypium hirsutum HOM05D006609 ORTHO05D008551 7.1e-105 384.4 258 73.6
QL12p041270 Quercus lobata HOM05D006609 ORTHO05D008551 4.6e-104 381.7 230 83.5
Thecc.09G046100 Theobroma cacao HOM05D006609 ORTHO05D008551 4.6e-104 381.7 258 74.4
Potri.006G237600 Populus trichocarpa HOM05D006609 ORTHO05D008551 2.0e-99 366.3 240 75.0
MD15G1092400 Malus domestica HOM05D006609 ORTHO05D008551 4.5e-99 365.2 267 70.8
TAR626G1286 Trochodendron aralioides HOM05D006609 ORTHO05D008551 5.8e-99 364.8 256 73.0
Manes.16G074700 Manihot esculenta HOM05D006609 ORTHO05D008551 1.0e-98 364.0 253 71.1
COL.COLO4_20980 Corchorus olitorius HOM05D006609 ORTHO05D008551 1.3e-98 363.6 258 69.0
CSS0000910 Camellia sinensis var. sinensis HOM05D006609 ORTHO05D008551 2.5e-97 359.4 251 72.5
TWI63G1544 Tripterygium wilfordii HOM05D006609 ORTHO05D008551 2.7e-96 355.9 258 69.8
Glyma.17G192700 Glycine max HOM05D006609 ORTHO05D008551 6.0e-96 354.8 250 71.2
Actinidia13339 Actinidia chinensis HOM05D006609 ORTHO05D008551 2.3e-95 352.8 251 68.5
Gorai.009G049200 Gossypium raimondii HOM05D006609 ORTHO05D008551 2.3e-95 352.8 237 73.4
CANSAT25G3446 Cannabis sativa HOM05D006609 ORTHO05D008551 1.5e-94 350.1 259 69.9
MELO3C003467.2 Cucumis melo HOM05D006609 ORTHO05D008551 2.5e-94 349.4 252 69.8
VMungo0647G0700 Vigna mungo HOM05D006609 ORTHO05D008551 4.3e-94 348.6 268 67.2
MD08G1113000 Malus domestica HOM05D006609 ORTHO05D008551 1.3e-93 347.1 271 67.5
ClCG11G015120 Citrullus lanatus HOM05D006609 ORTHO05D008551 2.1e-93 346.3 263 67.7
FvH4_2g35350 Fragaria vesca HOM05D006609 ORTHO05D008551 1.4e-92 343.6 259 68.3
RcHm_v2.0_Chr6g0306561 Rosa chinensis HOM05D006609 ORTHO05D008551 1.4e-92 343.6 259 68.3
MBI04_g06585_MAGBIO Magnolia biondii HOM05D006609 ORTHO05D008551 5.3e-92 341.7 257 69.3
Aqoxy7G01461 Aquilegia oxysepala HOM05D006609 ORTHO05D008551 6.9e-92 341.3 254 66.5
Nn8g39112 Nelumbo nucifera HOM05D006609 ORTHO05D008551 2.6e-91 339.3 259 69.9
PGR031G0123 Punica granatum HOM05D006609 ORTHO05D008551 4.5e-91 338.6 251 68.9
Phvul.001G063300 Phaseolus vulgaris HOM05D006609 ORTHO05D008551 2.2e-90 336.3 251 67.3
Sed0023433 Sechium edule HOM05D006609 ORTHO05D008551 2.2e-90 336.3 252 67.1
Dinv27894 Davidia involucrata HOM05D006609 ORTHO05D008551 2.9e-90 335.9 236 72.0
Sabra06G0185800 Salix brachista HOM05D006609 ORTHO05D008551 3.2e-89 332.4 292 61.0
arahy.Tifrunner.gnm1.ann1.519I88 Arachis hypogaea HOM05D006609 ORTHO05D008551 9.3e-89 330.9 250 67.6
Ciclev10009282m.g Citrus clementina HOM05D006609 ORTHO05D008551 1.2e-88 330.5 251 66.1
Lj1g0027455 Lotus japonicus HOM05D006609 ORTHO05D008551 3.5e-88 328.9 246 67.5
Lalb_Chr24g0402671 Lupinus albus HOM05D006609 ORTHO05D008551 3.5e-88 328.9 262 66.0
TPR.G24534 Trifolium pratense HOM05D006609 ORTHO05D008551 3.5e-88 328.9 253 66.4
arahy.Tifrunner.gnm1.ann1.TZ2NYQ Arachis hypogaea HOM05D006609 ORTHO05D008551 4.6e-88 328.6 250 67.2
Hma1.2p1_1138F.1_g260815 Hydrangea macrophylla HOM05D006609 ORTHO05D008551 1.0e-87 327.4 251 68.1
Ca_03364_v3 Cicer arietinum L. HOM05D006609 ORTHO05D008551 1.8e-87 326.6 251 66.5
Psat6g037080 Pisum sativum HOM05D006609 ORTHO05D008551 3.0e-87 325.9 253 66.4
Sopen12g031720 Solanum pennellii HOM05D006609 ORTHO05D008551 5.1e-87 325.1 257 65.4
ATR0705G113 Amborella trichopoda HOM05D006609 ORTHO05D008551 9.7e-86 320.9 255 62.7
CDE02G0347 Ceratophyllum demersum HOM05D006609 ORTHO05D008551 1.6e-85 320.1 259 62.9
FAN27G2415 Fragaria x ananassa HOM05D006609 ORTHO05D008551 2.2e-85 319.7 262 64.5
Hund03393 Selenicereus undatus HOM05D006609 ORTHO05D008551 2.2e-85 319.7 254 65.4
CsaV3_3G048520 Cucumis sativus L. HOM05D006609 ORTHO05D008551 2.8e-85 319.3 231 70.1
FAN15G1983 Fragaria x ananassa HOM05D006609 ORTHO05D008551 4.8e-85 318.5 261 64.4
Rhsim02G0176600 Rhododendron simsii HOM05D006609 ORTHO05D008551 1.1e-84 317.4 241 66.4
RhsimUnG0061900 Rhododendron simsii HOM05D006609 ORTHO05D008551 1.1e-84 317.4 235 66.8
THA.LOC104808485 Tarenaya hassleriana HOM05D006609 ORTHO05D008551 5.3e-84 315.1 257 63.0
Migut.A00197 Erythranthe guttata HOM05D006609 ORTHO05D008551 6.9e-84 314.7 252 62.3
FAN20G1237 Fragaria x ananassa HOM05D006609 ORTHO05D008551 6.9e-84 314.7 262 64.1
Gohir.A05G046200 Gossypium hirsutum HOM05D006609 ORTHO05D008551 6.9e-84 314.7 212 73.6
CAN.G208.62 Capsicum annuum HOM05D006609 ORTHO05D008551 1.5e-83 313.5 262 62.6
MSTRG.25911 Avicennia marina HOM05D006609 ORTHO05D008551 1.3e-82 310.5 255 61.6
Peaxi162Scf00064g01521 Petunia axillaris HOM05D006609 ORTHO05D008551 3.8e-82 308.9 248 64.1
Lsat_1_v5_gn_6_22680 Lactuca sativa HOM05D006609 ORTHO05D008551 5.0e-82 308.5 240 63.3
Medtr1g007120 Medicago truncatula HOM05D006609 ORTHO05D008551 6.5e-82 308.1 259 62.5
Sc09g0009360 Simmondsia chinensis HOM05D006609 ORTHO05D008551 5.5e-81 305.1 254 63.0
AL6G22350 Arabidopsis lyrata HOM05D006609 ORTHO05D008551 9.4e-81 304.3 258 59.7
CARHR201580 Cardamine hirsuta HOM05D006609 ORTHO05D008551 4.6e-80 302.0 258 58.9
Atru.chr7.2079 Acer truncatum HOM05D006609 ORTHO05D008551 6.1e-80 301.6 218 68.3
Sp6g31980 Schrenkiella parvula HOM05D006609 ORTHO05D008551 7.9e-80 301.2 258 57.8
Thhalv10014470m.g Eutrema salsugineum HOM05D006609 ORTHO05D008551 1.0e-79 300.8 258 59.3
Solyc12g095820.3 Solanum lycopersicum HOM05D006609 ORTHO05D008551 3.0e-79 299.3 236 65.3
Eucgr.C00603 Eucalyptus grandis HOM05D006609 ORTHO05D008551 6.7e-79 298.1 249 64.3
Ah.16g105840 Amaranthus hybridus HOM05D006609 ORTHO05D008551 8.8e-79 297.7 250 59.6
Aa31LG3G15550 Aethionema arabicum HOM05D006609 ORTHO05D008551 1.5e-78 297.0 256 58.2
BolC2t06479H Brassica oleracea HOM05D006609 ORTHO05D008551 1.5e-78 297.0 260 56.2
A02p01130 Brassica napus HOM05D006609 ORTHO05D008551 2.0e-78 296.6 261 56.3
PGSC0003DMG400029395 Solanum tuberosum HOM05D006609 ORTHO05D008551 2.0e-78 296.6 236 64.8
BcaC03g13384 Brassica carinata HOM05D006609 ORTHO05D008551 2.5e-78 296.2 262 55.7
C02p05310 Brassica napus HOM05D006609 ORTHO05D008551 2.5e-78 296.2 262 55.7
BraA02t05092Z Brassica rapa HOM05D006609 ORTHO05D008551 2.5e-78 296.2 262 56.1
Cc08_g09720 Coffea canephora HOM05D006609 ORTHO05D008551 2.2e-77 293.1 271 59.0
PSO173G0006 Papaver somniferum HOM05D006609 ORTHO05D008551 2.8e-77 292.7 253 56.1
BraA10t44672Z Brassica rapa HOM05D006609 ORTHO05D008551 3.7e-77 292.4 258 57.0
PSO824G0011 Papaver somniferum HOM05D006609 ORTHO05D008551 3.7e-77 292.4 256 55.5
AUR62042442 Chenopodium quinoa HOM05D006609 ORTHO05D008551 4.5e-75 285.4 250 58.4
SalBow4G0386 Salvia bowleyana HOM05D006609 ORTHO05D008551 4.5e-75 285.4 253 57.3
BcaC04g19208 Brassica carinata HOM05D006609 ORTHO05D008551 2.2e-74 283.1 258 56.6
BolC9t59347H Brassica oleracea HOM05D006609 ORTHO05D008551 2.2e-74 283.1 258 56.6
HPP92_021778 Vanilla planifolia HOM05D006609 ORTHO05D008551 1.1e-73 280.8 248 58.5
A10p26110 Brassica napus HOM05D006609 ORTHO05D008551 5.5e-73 278.5 284 51.4
Carub.0006s1012 Capsella rubella HOM05D006609 ORTHO05D008551 6.1e-72 275.0 237 59.1
C09p65180 Brassica napus HOM05D006609 ORTHO05D008551 2.3e-71 273.1 258 55.8
Nitab4.5_0001737g0100 Nicotiana tabacum HOM05D006609 ORTHO05D008551 2.2e-69 266.5 258 59.3
SGA_v2.0_scaffold243G44286 Striga asiatica HOM05D006609 ORTHO05D008551 2.0e-67 260.0 253 54.9
BcaB08g37036 Brassica carinata HOM05D006609 ORTHO05D008551 8.5e-66 254.6 258 52.7
Zm00001eb337980 Zea mays HOM05D006609 ORTHO05D008551 1.5e-65 253.8 250 56.0
Os01g0200400 Oryza sativa ssp. japonica HOM05D006609 ORTHO05D008551 7.2e-65 251.5 262 53.8
HanXRQChr13g0402211 Helianthus annuus HOM05D006609 ORTHO05D008551 8.0e-64 248.1 206 59.7
Nitab4.5_0001309g0120 Nicotiana tabacum HOM05D006609 ORTHO05D008551 5.2e-63 245.4 340 46.2
AT5G11640 Arabidopsis thaliana HOM05D006609 ORTHO05D008551 8.8e-63 244.6 190 61.1
Prupe.1G447200 Prunus persica HOM05D006609 ORTHO05D008551 1.1e-62 244.2 181 68.0
Cpa.g.sc78.16 Carica papaya HOM05D006609 ORTHO05D008551 2.6e-62 243.0 224 58.9
DCAR_000757 Daucus carota HOM05D006609 ORTHO05D010582 1.2e-54 217.6 244 50.8
AUR62009264 Chenopodium quinoa HOM05D006609 ORTHO05D008551 3.8e-50 202.6 170 60.0
BcaNung02663 Brassica carinata HOM05D006609 ORTHO05D008551 1.8e-47 193.7 148 60.1
ECA233G1748 Erigeron canadensis HOM05D006609 ORTHO05D008551 4.5e-43 179.1 132 68.2
Lsat_1_v5_gn_5_12101 Lactuca sativa HOM05D006609 ORTHO05D008551 1.2e-38 164.5 136 61.0
FAN24G0356 Fragaria x ananassa HOM05D006609 ORTHO05D008551 6.4e-37 158.7 116 69.8
FAN24G3337 Fragaria x ananassa HOM05D006609 ORTHO05D008551 6.4e-37 158.7 116 69.8
unitig_93.g30708 Utricularia gibba HOM05D006609 ORTHO05D008551 9.2e-36 154.8 245 42.0
vmacro11054 Vaccinium macrocarpon HOM05D006609 ORTHO05D008551 3.3e-33 146.4 110 66.4
SEGI_38144 Sequoiadendron giganteum HOM05D006609 ORTHO05D008551 1.5e-25 120.9 122 52.5
HanXRQChr16g0519661 Helianthus annuus HOM05D006609 ORTHO05D008551 2.8e-24 116.7 128 53.1
SMO144G0045 Selaginella moellendorffii HOM05D006609 ORTHO05D008551 8.1e-24 115.2 154 42.2
PRCOL_00006038 Prasinoderma coloniale HOM05D006609 ORTHO05D008551 2.3e-23 113.6 223 33.6
QL09p008974 Quercus lobata HOM05D006609 ORTHO05D008551 2.3e-23 113.6 72 83.3
FAN24G1965 Fragaria x ananassa HOM05D006609 ORTHO05D008551 2.6e-22 110.2 91 65.9
EL10Ac2g04002 Beta vulgaris HOM05D006609 ORTHO05D008551 4.4e-22 109.4 206 37.4
SEGI_39152 Sequoiadendron giganteum HOM05D006609 ORTHO05D008551 3.5e-19 99.8 104 50.0
Haze_26101 Corylus avellana HOM05D006609 ORTHO05D008551 4.9e-13 79.3 120 37.5
Cre10.g426400 Chlamydomonas reinhardtii HOM05D006609 ORTHO05D008551 5.4e-12 75.9 261 24.9
arahy.Tifrunner.gnm1.ann1.WH0W9H Arachis hypogaea HOM05D006609 ORTHO05D008551 1.8e-07 60.8 38 71.1
FvH4_5g31640 Fragaria vesca HOM05D006609 ORTHO05D046171 8.9e-07 58.5 62 50.0
FAN18G4502 Fragaria x ananassa HOM05D006609 ORTHO05D046171 1.2e-06 58.2 89 41.6


User provided reference genes

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