Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G202200 Carya illinoinensis HOM05D004583 ORTHO05D005469 7.1e-262 906.7 464 100.0
Cfa013385 Carpinus fangiana HOM05D004583 ORTHO05D005469 1.4e-188 663.3 451 77.6
CiPaw.08G027000 Carya illinoinensis HOM05D004583 ORTHO05D005469 9.8e-187 657.1 453 76.6
QL12p041048 Quercus lobata HOM05D004583 ORTHO05D005469 8.6e-183 644.0 453 75.5
Prupe.1G445300 Prunus persica HOM05D004583 ORTHO05D005469 7.6e-155 551.2 453 66.4
Potri.018G046700 Populus trichocarpa HOM05D004583 ORTHO05D005469 1.7e-154 550.1 452 65.7
Sabra18G0045300 Salix brachista HOM05D004583 ORTHO05D005469 7.3e-150 534.6 453 64.2
Ciclev10007949m.g Citrus clementina HOM05D004583 ORTHO05D005469 2.1e-149 533.1 452 65.0
GSVIVG01035292001 Vitis vinifera HOM05D004583 ORTHO05D005469 8.1e-149 531.2 453 63.8
MD15G1090900 Malus domestica HOM05D004583 ORTHO05D005469 2.4e-148 529.6 458 64.0
CSS0042231 Camellia sinensis var. sinensis HOM05D004583 ORTHO05D005469 2.1e-144 516.5 452 62.8
CANSAT25G3668 Cannabis sativa HOM05D004583 ORTHO05D005469 3.9e-143 512.3 452 62.2
MD08G1111400 Malus domestica HOM05D004583 ORTHO05D005469 2.5e-142 509.6 458 62.2
TWI63G0012 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 5.6e-142 508.4 453 62.7
Dinv23388 Davidia involucrata HOM05D004583 ORTHO05D005469 3.1e-140 502.7 452 61.5
Hma1.2p1_0049F.1_g028360 Hydrangea macrophylla HOM05D004583 ORTHO05D005469 5.3e-140 501.9 454 60.1
Potri.006G236400 Populus trichocarpa HOM05D004583 ORTHO05D005469 1.5e-139 500.4 454 61.2
arahy.Tifrunner.gnm1.ann1.R6LPAT Arachis hypogaea HOM05D004583 ORTHO05D005469 8.4e-138 494.6 448 59.2
TAR636G0454 Trochodendron aralioides HOM05D004583 ORTHO05D005469 8.4e-138 494.6 453 59.8
Nn6g35316 Nelumbo nucifera HOM05D004583 ORTHO05D005469 3.2e-137 492.7 460 60.7
ClCG08G012110 Citrullus lanatus HOM05D004583 ORTHO05D005469 2.1e-136 490.0 453 60.0
FvH4_2g35320 Fragaria vesca HOM05D004583 ORTHO05D005469 1.0e-135 487.6 452 59.1
Manes.16G073800 Manihot esculenta HOM05D004583 ORTHO05D005469 3.0e-135 486.1 453 60.5
arahy.Tifrunner.gnm1.ann1.6GB5J4 Arachis hypogaea HOM05D004583 ORTHO05D005469 5.1e-135 485.3 459 58.0
FAN20G1421 Fragaria x ananassa HOM05D004583 ORTHO05D005469 1.1e-134 484.2 452 58.6
PGR031G0432 Punica granatum HOM05D004583 ORTHO05D005469 4.8e-133 478.8 465 58.1
RcHm_v2.0_Chr6g0306601 Rosa chinensis HOM05D004583 ORTHO05D005469 8.1e-133 478.0 452 58.6
Actinidia15745 Actinidia chinensis HOM05D004583 ORTHO05D005469 1.4e-132 477.2 455 59.3
Sc09g0009440 Simmondsia chinensis HOM05D004583 ORTHO05D005469 6.9e-132 474.9 457 58.4
MELO3C011128.2 Cucumis melo HOM05D004583 ORTHO05D005469 1.5e-131 473.8 461 58.6
Eucgr.C00611 Eucalyptus grandis HOM05D004583 ORTHO05D005469 2.2e-130 469.9 466 58.4
TWI34G1497 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 2.2e-130 469.9 452 58.6
Lalb_Chr22g0361041 Lupinus albus HOM05D004583 ORTHO05D005469 8.4e-130 468.0 456 56.6
Nitab4.5_0001737g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 1.1e-129 467.6 464 57.1
SHI18791 Sapria himalayana HOM05D004583 ORTHO05D005469 1.9e-129 466.8 452 56.0
Lsat_1_v5_gn_1_42160 Lactuca sativa HOM05D004583 ORTHO05D005469 2.4e-129 466.5 447 58.2
Sabra06G0184800 Salix brachista HOM05D004583 ORTHO05D005469 2.4e-129 466.5 456 58.1
Sopen12g031740 Solanum pennellii HOM05D004583 ORTHO05D005469 4.2e-129 465.7 459 57.1
Psat6g035200 Pisum sativum HOM05D004583 ORTHO05D005469 5.5e-129 465.3 454 57.7
Solyc12g095840.2 Solanum lycopersicum HOM05D004583 ORTHO05D005469 9.3e-129 464.5 459 56.9
Sed0024833 Sechium edule HOM05D004583 ORTHO05D005469 3.5e-128 462.6 453 57.2
TAR624G1263 Trochodendron aralioides HOM05D004583 ORTHO05D005469 6.0e-128 461.8 453 57.2
CsaV3_2G030710 Cucumis sativus L. HOM05D004583 ORTHO05D005469 1.8e-127 460.3 461 58.1
HanXRQChr11g0352321 Helianthus annuus HOM05D004583 ORTHO05D005469 2.3e-127 459.9 451 57.4
Medtr1g007160 Medicago truncatula HOM05D004583 ORTHO05D005469 3.0e-127 459.5 452 57.7
Nitab4.5_0001309g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 1.9e-126 456.8 458 57.0
Thecc.09G047500 Theobroma cacao HOM05D004583 ORTHO05D005469 2.5e-126 456.4 445 58.0
FAN27G2572 Fragaria x ananassa HOM05D004583 ORTHO05D005469 1.6e-125 453.8 471 55.4
Gohir.D07G025000 Gossypium hirsutum HOM05D004583 ORTHO05D005469 1.8e-124 450.3 445 56.6
COL.COLO4_20995 Corchorus olitorius HOM05D004583 ORTHO05D005469 6.9e-124 448.4 445 57.1
Peaxi162Scf00064g01528 Petunia axillaris HOM05D004583 ORTHO05D005469 6.9e-124 448.4 459 56.0
Gohir.A07G022241 Gossypium hirsutum HOM05D004583 ORTHO05D005469 1.2e-123 447.6 445 56.0
DCAR_004462 Daucus carota HOM05D004583 ORTHO05D005469 2.0e-123 446.8 450 56.2
Gorai.001G026100 Gossypium raimondii HOM05D004583 ORTHO05D005469 2.0e-123 446.8 445 56.0
Sp4g05420 Schrenkiella parvula HOM05D004583 ORTHO05D005469 1.7e-122 443.7 458 54.1
BcaB08g35216 Brassica carinata HOM05D004583 ORTHO05D005469 3.8e-122 442.6 467 54.4
Thhalv10001956m.g Eutrema salsugineum HOM05D004583 ORTHO05D005469 8.4e-122 441.4 457 54.3
CAN.G208.65 Capsicum annuum HOM05D004583 ORTHO05D005469 1.1e-121 441.0 430 55.1
Cc08_g09870 Coffea canephora HOM05D004583 ORTHO05D005469 1.9e-121 440.3 456 56.4
Hund03382 Selenicereus undatus HOM05D004583 ORTHO05D005469 4.2e-121 439.1 454 53.7
Lj1g0018877 Lotus japonicus HOM05D004583 ORTHO05D005469 5.5e-121 438.7 458 54.6
BraA03t11919Z Brassica rapa HOM05D004583 ORTHO05D005469 1.2e-120 437.6 461 54.7
AL4G17420 Arabidopsis lyrata HOM05D004583 ORTHO05D005469 2.7e-120 436.4 459 53.8
AT2G25740 Arabidopsis thaliana HOM05D004583 ORTHO05D005469 3.5e-120 436.0 460 53.3
Aa31LG5G9840 Aethionema arabicum HOM05D004583 ORTHO05D005469 6.0e-120 435.3 461 54.7
Oeu038813.1 Olea europaea HOM05D004583 ORTHO05D005469 7.9e-120 434.9 469 53.5
TPR.G24505 Trifolium pratense HOM05D004583 ORTHO05D005469 7.9e-120 434.9 456 55.9
A03p27060 Brassica napus HOM05D004583 ORTHO05D005469 1.3e-119 434.1 461 54.4
BolC3t15588H Brassica oleracea HOM05D004583 ORTHO05D005469 1.3e-119 434.1 460 54.6
Carub.0004s0553 Capsella rubella HOM05D004583 ORTHO05D005469 1.3e-119 434.1 461 53.1
Duzib168G1134 Durio zibethinus HOM05D004583 ORTHO05D005469 5.1e-119 432.2 445 56.0
C03p32470 Brassica napus HOM05D004583 ORTHO05D005469 6.7e-119 431.8 460 54.3
Rhsim02G0175400 Rhododendron simsii HOM05D004583 ORTHO05D005469 4.3e-118 429.1 458 53.3
THA.LOC104803803 Tarenaya hassleriana HOM05D004583 ORTHO05D005469 7.4e-118 428.3 461 54.9
EL10Ac2g03985 Beta vulgaris HOM05D004583 ORTHO05D005469 1.6e-117 427.2 453 53.0
A09p55470 Brassica napus HOM05D004583 ORTHO05D005469 2.1e-117 426.8 462 52.8
BraA09t40949Z Brassica rapa HOM05D004583 ORTHO05D005469 2.1e-117 426.8 462 52.8
VMungo1309G0941 Vigna mungo HOM05D004583 ORTHO05D005469 8.2e-117 424.9 466 53.6
AUR62009234 Chenopodium quinoa HOM05D004583 ORTHO05D005469 4.1e-116 422.5 471 51.8
Migut.E01537 Erythranthe guttata HOM05D004583 ORTHO05D005469 5.3e-116 422.2 463 51.8
MBI04_g20300_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 6.9e-116 421.8 448 55.4
AUR62041963 Chenopodium quinoa HOM05D004583 ORTHO05D005469 2.6e-115 419.9 491 49.9
FAN15G2845 Fragaria x ananassa HOM05D004583 ORTHO05D005469 2.6e-115 419.9 453 55.4
Phvul.009G111600 Phaseolus vulgaris HOM05D004583 ORTHO05D005469 4.5e-115 419.1 465 52.3
AUR62041959 Chenopodium quinoa HOM05D004583 ORTHO05D005469 1.3e-114 417.5 513 48.7
BcaC07g40848 Brassica carinata HOM05D004583 ORTHO05D005469 6.5e-114 415.2 460 52.6
MSTRG.14029 Avicennia marina HOM05D004583 ORTHO05D005469 1.1e-113 414.5 456 51.5
BolC8t51418H Brassica oleracea HOM05D004583 ORTHO05D005469 4.2e-113 412.5 463 52.3
Rhsim02G0175600 Rhododendron simsii HOM05D004583 ORTHO05D005469 2.1e-112 410.2 453 53.0
PSO210G3632 Papaver somniferum HOM05D004583 ORTHO05D005469 6.1e-112 408.7 456 52.4
CARHR115490 Cardamine hirsuta HOM05D004583 ORTHO05D005469 1.1e-110 404.4 399 56.9
ECA248G2390 Erigeron canadensis HOM05D004583 ORTHO05D005469 1.1e-110 404.4 464 51.1
ATR0705G143 Amborella trichopoda HOM05D004583 ORTHO05D005469 3.7e-109 399.4 480 50.4
Aqoxy7G03869 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 5.3e-108 395.6 456 50.4
Medtr3g110340 Medicago truncatula HOM05D004583 ORTHO05D005469 7.7e-107 391.7 455 50.3
C08p38460 Brassica napus HOM05D004583 ORTHO05D005469 1.0e-106 391.3 442 52.3
SGA_v2.0_scaffold169G38659 Striga asiatica HOM05D004583 ORTHO05D005469 1.4e-105 387.5 490 47.8
Ca_15574_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 2.5e-105 386.7 448 51.8
SalBow1G6079 Salvia bowleyana HOM05D004583 ORTHO05D005469 1.2e-104 384.4 513 45.8
PSO210G2011 Papaver somniferum HOM05D004583 ORTHO05D005469 6.1e-104 382.1 453 50.1
Glyma.04G086400 Glycine max HOM05D004583 ORTHO05D005469 1.1e-102 377.9 375 57.1
MSTRG.1664 Avicennia marina HOM05D004583 ORTHO05D005469 4.8e-101 372.5 378 53.4
Lj7C698G10 Lonicera japonica HOM05D004583 ORTHO05D005469 1.8e-100 370.5 409 52.8
Actinidia14686 Actinidia chinensis HOM05D004583 ORTHO05D005469 6.9e-100 368.6 410 53.9
TPR.G12398 Trifolium pratense HOM05D004583 ORTHO05D005469 2.9e-98 363.2 462 47.0
vmacro11048 Vaccinium macrocarpon HOM05D004583 ORTHO05D005469 2.9e-98 363.2 357 56.0
CANSAT35G1178 Cannabis sativa HOM05D004583 ORTHO05D005469 5.0e-98 362.5 465 48.8
BcaC01g04904 Brassica carinata HOM05D004583 ORTHO05D005469 1.1e-97 361.3 459 48.8
Psat5g020600 Pisum sativum HOM05D004583 ORTHO05D005469 1.2e-96 357.8 401 51.9
unitig_32.g11475 Utricularia gibba HOM05D004583 ORTHO05D005469 1.4e-95 354.4 446 47.3
Os05g0521500 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 4.4e-94 349.4 460 47.2
Zm00001eb293710 Zea mays HOM05D004583 ORTHO05D005469 4.4e-94 349.4 468 46.2
arahy.Tifrunner.gnm1.ann1.M0YYQ7 Arachis hypogaea HOM05D004583 ORTHO05D005469 4.1e-92 342.8 391 49.4
DCAR_003076 Daucus carota HOM05D004583 ORTHO05D005469 9.1e-92 341.7 463 47.5
Aqoxy7G01424 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 1.2e-91 341.3 450 46.9
SEGI_02523 Sequoiadendron giganteum HOM05D004583 ORTHO05D005469 1.2e-91 341.3 455 45.5
arahy.Tifrunner.gnm1.ann1.AK4U3Y Arachis hypogaea HOM05D004583 ORTHO05D005469 4.2e-89 332.8 391 48.8
Os01g0743600 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 5.2e-87 325.9 469 44.3
Haze_21911 Corylus avellana HOM05D004583 ORTHO05D005469 7.5e-86 322.0 224 74.6
Lalb_Chr23g0269711 Lupinus albus HOM05D004583 ORTHO05D005469 1.7e-85 320.9 401 46.1
Mapoly0168s0005 Marchantia polymorpha HOM05D004583 ORTHO05D005469 1.7e-82 310.8 447 41.8
Pp3c6_5840 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.3e-79 300.4 479 39.7
Pp3c5_21890 Physcomitrium patens HOM05D004583 ORTHO05D005469 5.2e-79 299.3 492 39.2
Pp3c5_21897 Physcomitrium patens HOM05D004583 ORTHO05D005469 5.2e-79 299.3 492 39.2
HPP92_022971 Vanilla planifolia HOM05D004583 ORTHO05D005469 2.4e-76 290.4 361 48.8
AagrBONN_evm.TU.Sc2ySwM_117.1952 Anthoceros agrestis HOM05D004583 ORTHO05D005469 2.7e-72 276.9 462 40.0
Pp3c15_22980 Physcomitrium patens HOM05D004583 ORTHO05D005469 3.1e-68 263.5 440 40.0
SMO238G0017 Selaginella moellendorffii HOM05D004583 ORTHO05D005469 4.5e-67 259.6 402 40.0
Pp3c9_19040 Physcomitrium patens HOM05D004583 ORTHO05D005469 7.7e-67 258.8 500 36.8
Ah.10g034890 Amaranthus hybridus HOM05D004583 ORTHO05D005469 2.5e-65 253.8 400 42.5
Atru.chr7.2059 Acer truncatum HOM05D004583 ORTHO05D005469 1.8e-60 237.7 234 56.8
Haze_21912 Corylus avellana HOM05D004583 ORTHO05D005469 3.2e-60 236.9 155 80.0
Zm00001eb153580 Zea mays HOM05D004583 ORTHO05D005469 7.8e-59 232.3 461 37.5
Atru.chr7.2058 Acer truncatum HOM05D004583 ORTHO05D005469 9.8e-54 215.3 191 63.9
Cpa.g.c37634 Carica papaya HOM05D004583 ORTHO05D005469 1.3e-50 204.9 258 48.8
Pp3c27_6400 Physcomitrium patens HOM05D004583 ORTHO05D005469 5.1e-42 176.4 517 30.6
CDE02G3504 Ceratophyllum demersum HOM05D004583 ORTHO05D005469 1.1e-41 175.3 158 62.7
CBR_g21950 Chara braunii HOM05D004583 ORTHO05D005469 5.6e-41 172.9 604 29.5
Aqoxy6G01950 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 6.2e-40 169.5 280 41.8
Ca_19225_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 1.8e-39 167.9 168 57.1
CDE02G1982 Ceratophyllum demersum HOM05D004583 ORTHO05D001336 8.9e-39 165.6 271 37.6
MBI04_g42480_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 7.6e-38 162.5 151 62.9
Pp3c16_16060 Physcomitrium patens HOM05D004583 ORTHO05D005469 9.9e-38 162.2 546 28.6
Lj4g0027824 Lotus japonicus HOM05D004583 ORTHO05D005469 4.9e-37 159.8 136 63.2
Ca_12761_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 1.2e-32 145.2 141 53.2
MBI04_g32315_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 3.6e-24 117.1 79 69.6
Glyma.06G087900 Glycine max HOM05D004583 ORTHO05D005469 2.2e-21 107.8 138 48.6
Cpa.g.sc7.206 Carica papaya HOM05D004583 ORTHO05D005469 1.9e-20 104.8 68 72.1
HPP92_022972 Vanilla planifolia HOM05D004583 ORTHO05D005469 1.8e-18 98.2 136 46.3
TPR.G9691 Trifolium pratense HOM05D004583 ORTHO05D005469 1.1e-15 89.0 94 46.8
Aqoxy6G01951 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 2.0e-14 84.7 58 69.0
Cpa.g.c46051 Carica papaya HOM05D004583 ORTHO05D005469 1.3e-08 65.5 39 71.8


User provided reference genes

Program Settings