Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G201400 Carya illinoinensis HOM05D006132 ORTHO05D007305 0.0e+00 3953.3 1984 100.0
Haze_01967 Corylus avellana HOM05D006132 ORTHO05D007305 0.0e+00 3204.1 2004 81.5
QL12p040855 Quercus lobata HOM05D006132 ORTHO05D007305 0.0e+00 3185.6 1985 81.2
Prupe.1G443500 Prunus persica HOM05D006132 ORTHO05D007305 0.0e+00 2721.8 1912 73.2
Dinv23402 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2703.3 1955 71.4
Atru.chr7.2044 Acer truncatum HOM05D006132 ORTHO05D007305 0.0e+00 2693.7 1991 69.5
GSVIVG01035326001 Vitis vinifera HOM05D006132 ORTHO05D007305 0.0e+00 2678.7 1998 68.9
FvH4_2g35140 Fragaria vesca HOM05D006132 ORTHO05D007305 0.0e+00 2649.0 1984 69.5
Ciclev10010526m.g Citrus clementina HOM05D006132 ORTHO05D007305 0.0e+00 2648.6 2016 69.2
TAR636G1718 Trochodendron aralioides HOM05D006132 ORTHO05D007305 0.0e+00 2632.4 2072 66.6
RcHm_v2.0_Chr6g0306811 Rosa chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2629.4 2008 68.6
Thecc.09G049200 Theobroma cacao HOM05D006132 ORTHO05D007305 0.0e+00 2627.8 2003 68.3
MD08G1108900 Malus domestica HOM05D006132 ORTHO05D007305 0.0e+00 2627.0 2012 68.7
Manes.03G057600 Manihot esculenta HOM05D006132 ORTHO05D007305 0.0e+00 2600.9 2001 68.1
Potri.018G057900 Populus trichocarpa HOM05D006132 ORTHO05D007305 0.0e+00 2577.7 1990 67.7
COL.COLO4_21010 Corchorus olitorius HOM05D006132 ORTHO05D007305 0.0e+00 2575.8 1988 68.1
Dinv02537 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2572.3 1883 70.8
Gorai.001G024600 Gossypium raimondii HOM05D006132 ORTHO05D007305 0.0e+00 2541.1 2003 66.5
Duzib168G1248 Durio zibethinus HOM05D006132 ORTHO05D007305 0.0e+00 2531.1 2012 66.4
Ca_15565_v3 Cicer arietinum L. HOM05D006132 ORTHO05D007305 0.0e+00 2527.3 1986 66.1
TWI34G0160 Tripterygium wilfordii HOM05D006132 ORTHO05D007305 0.0e+00 2520.7 2000 66.1
Glyma.04G087200 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 2513.8 1987 65.9
Glyma.06G088900 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 2512.3 1987 65.9
Nn8g39007 Nelumbo nucifera HOM05D006132 ORTHO05D007305 0.0e+00 2507.2 2064 64.1
Lalb_Chr08g0242871 Lupinus albus HOM05D006132 ORTHO05D007305 0.0e+00 2502.6 1986 65.0
Sed0028022 Sechium edule HOM05D006132 ORTHO05D007305 0.0e+00 2489.5 1999 65.0
Lj1g0008631 Lotus japonicus HOM05D006132 ORTHO05D007305 0.0e+00 2479.1 1978 64.6
vmacro00180 Vaccinium macrocarpon HOM05D006132 ORTHO05D007305 0.0e+00 2470.3 1984 66.1
Lj8C561G12 Lonicera japonica HOM05D006132 ORTHO05D007305 0.0e+00 2468.7 1904 67.0
VMungo1309G3161 Vigna mungo HOM05D006132 ORTHO05D007305 0.0e+00 2464.5 1983 64.5
Medtr3g110417 Medicago truncatula HOM05D006132 ORTHO05D007305 0.0e+00 2463.7 1975 64.8
Phvul.009G112700 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 2435.2 1985 64.3
Psat0s3156g0040 Pisum sativum HOM05D006132 ORTHO05D007305 0.0e+00 2434.4 1985 64.3
Gohir.D07G023900 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 2430.6 1901 67.1
MELO3C003478.2 Cucumis melo HOM05D006132 ORTHO05D007305 0.0e+00 2429.4 2001 63.6
CsaV3_3G048410 Cucumis sativus L. HOM05D006132 ORTHO05D007305 0.0e+00 2426.7 2005 63.3
ClCG11G015000 Citrullus lanatus HOM05D006132 ORTHO05D007305 0.0e+00 2422.1 2023 63.2
TPR.G12374 Trifolium pratense HOM05D006132 ORTHO05D007305 0.0e+00 2370.9 2001 62.8
arahy.Tifrunner.gnm1.ann1.GM174E Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 2367.8 2125 60.5
PGR031G1631 Punica granatum HOM05D006132 ORTHO05D007305 0.0e+00 2348.9 1948 64.2
arahy.Tifrunner.gnm1.ann1.XPLI6K Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 2320.4 1965 63.2
Cc08_g10020 Coffea canephora HOM05D006132 ORTHO05D007305 0.0e+00 2317.7 1961 62.1
Gohir.A07G022180 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 2312.0 1870 65.5
MBI01_g01249_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 0.0e+00 2285.8 2036 59.8
Sc09g0009530 Simmondsia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2270.4 1947 61.3
Sopen08g019670 Solanum pennellii HOM05D006132 ORTHO05D007305 0.0e+00 2263.0 1959 60.5
MSTRG.25925 Avicennia marina HOM05D006132 ORTHO05D007305 0.0e+00 2243.8 1991 59.7
Aqoxy7G03955 Aquilegia oxysepala HOM05D006132 ORTHO05D007305 0.0e+00 2240.3 2066 58.8
CAN.G9.6 Capsicum annuum HOM05D006132 ORTHO05D007305 0.0e+00 2236.8 1963 59.8
PSO210G7354 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 2236.8 2064 58.6
Migut.A00170 Erythranthe guttata HOM05D006132 ORTHO05D007305 0.0e+00 2220.7 1987 59.4
AUR62040212 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 2203.7 1996 58.2
PSO210G2191 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 2201.4 2050 58.1
AUR62009214 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 2180.6 2003 57.8
Rhsim11G0049000 Rhododendron simsii HOM05D006132 ORTHO05D007305 0.0e+00 2178.7 1959 60.7
THA.LOC104818581 Tarenaya hassleriana HOM05D006132 ORTHO05D007305 0.0e+00 2167.5 1996 59.4
DCAR_007699 Daucus carota HOM05D006132 ORTHO05D007305 0.0e+00 2136.7 1947 59.0
Eucgr.C00619 Eucalyptus grandis HOM05D006132 ORTHO05D007305 0.0e+00 2123.6 1880 61.2
Ah.11g044450 Amaranthus hybridus HOM05D006132 ORTHO05D007305 0.0e+00 2115.5 1983 57.1
Oeu038827.1 Olea europaea HOM05D006132 ORTHO05D007305 0.0e+00 2114.0 1959 58.0
SalBow4G1475 Salvia bowleyana HOM05D006132 ORTHO05D007305 0.0e+00 2107.4 1927 58.0
EL10Ac2g03960 Beta vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 2095.9 2123 53.8
ECA240G1625 Erigeron canadensis HOM05D006132 ORTHO05D007305 0.0e+00 2088.2 2018 56.5
Sp7g30590 Schrenkiella parvula HOM05D006132 ORTHO05D007305 0.0e+00 2082.0 1934 57.8
Hund19486 Selenicereus undatus HOM05D006132 ORTHO05D007305 0.0e+00 2075.4 1990 56.9
AT4G32820 Arabidopsis thaliana HOM05D006132 ORTHO05D007305 0.0e+00 2070.4 1913 57.7
Carub.0007s0767 Capsella rubella HOM05D006132 ORTHO05D007305 0.0e+00 2068.1 1949 57.5
AL7G18910 Arabidopsis lyrata HOM05D006132 ORTHO05D007305 0.0e+00 2064.3 1938 57.9
Thhalv10026823m.g Eutrema salsugineum HOM05D006132 ORTHO05D007305 0.0e+00 2062.7 1901 57.9
C01p06070 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 2059.6 1933 57.4
Lsat_1_v5_gn_3_109020 Lactuca sativa HOM05D006132 ORTHO05D007305 0.0e+00 2053.9 1993 56.3
A01p05470 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 2050.0 1933 57.3
BcaC09g52078 Brassica carinata HOM05D006132 ORTHO05D007305 0.0e+00 2049.6 1935 57.2
Nitab4.5_0000318g0080 Nicotiana tabacum HOM05D006132 ORTHO05D007305 0.0e+00 2045.0 1938 56.9
BraA01t00520Z Brassica rapa HOM05D006132 ORTHO05D007305 0.0e+00 2029.6 1962 56.6
BolC1t00600H Brassica oleracea HOM05D006132 ORTHO05D007305 0.0e+00 2026.5 1963 56.4
HanXRQChr03g0077991 Helianthus annuus HOM05D006132 ORTHO05D007305 0.0e+00 2023.1 1964 56.2
Aa31sc208G40 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 2001.1 1904 57.1
Aa31LG5G17300 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1998.0 1921 56.4
Actinidia01213 Actinidia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1997.2 1930 57.3
SGA_v2.0_scaffold103G30057 Striga asiatica HOM05D006132 ORTHO05D007305 0.0e+00 1988.0 1958 56.4
ATR0815G026 Amborella trichopoda HOM05D006132 ORTHO05D007305 0.0e+00 1907.9 2074 51.2
Cpa.g.sc7.235 Carica papaya HOM05D006132 ORTHO05D007305 0.0e+00 1813.5 1621 59.8
Solyc08g066010.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 0.0e+00 1771.5 1544 61.0
FAN20G0110 Fragaria x ananassa HOM05D006132 ORTHO05D007305 0.0e+00 1749.6 1336 68.7
HPP92_019594 Vanilla planifolia HOM05D006132 ORTHO05D007305 0.0e+00 1575.8 1786 49.3
unitig_0.g2566 Utricularia gibba HOM05D006132 ORTHO05D007305 0.0e+00 1531.5 1917 46.9
CSS0000087 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 0.0e+00 1466.1 1162 65.7
Pp3c4_1880 Physcomitrium patens HOM05D006132 ORTHO05D007305 0.0e+00 1295.0 2151 39.1
Mapoly0021s0014 Marchantia polymorpha HOM05D006132 ORTHO05D007305 0.0e+00 1246.1 2181 37.7
SMO365G0056 Selaginella moellendorffii HOM05D006132 ORTHO05D007305 0.0e+00 1217.6 1931 39.3
AagrBONN_evm.TU.Sc2ySwM_344.875 Anthoceros agrestis HOM05D006132 ORTHO05D007305 0.0e+00 1129.4 2080 36.2
CSS0048337 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 0.0e+00 1093.6 793 70.6
Nitab4.5_0002021g0060 Nicotiana tabacum HOM05D006132 ORTHO05D007305 3.3e-260 903.3 1395 41.1
CSS0029204 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 1.6e-257 894.4 799 60.8
Peaxi162Scf00840g00429 Petunia axillaris HOM05D006132 ORTHO05D007305 8.5e-256 888.6 782 61.4
SHI18807 Sapria himalayana HOM05D006132 ORTHO05D007305 6.8e-245 852.4 1156 44.1
CARHR240810 Cardamine hirsuta HOM05D006132 ORTHO05D007305 2.0e-241 840.9 706 62.6
CBR_g22939 Chara braunii HOM05D006132 ORTHO05D000048 1.9e-239 834.3 2090 31.7
Psat4g077080 Pisum sativum HOM05D006132 ORTHO05D007305 4.9e-227 793.1 755 58.3
Psat4g077000 Pisum sativum HOM05D006132 ORTHO05D007305 2.0e-204 718.0 735 54.8
SHI18802 Sapria himalayana HOM05D006132 ORTHO05D007305 1.0e-192 679.1 805 49.9
Solyc08g066000.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 1.5e-135 489.2 419 57.8
Peaxi162Scf00840g00428 Petunia axillaris HOM05D006132 ORTHO05D007305 9.2e-125 453.4 359 61.6
TAR636G0297 Trochodendron aralioides HOM05D006132 ORTHO05D007305 2.1e-108 399.1 498 48.0
TAR636G2276 Trochodendron aralioides HOM05D006132 ORTHO05D007305 6.4e-94 350.9 230 77.0
Psat2g119040 Pisum sativum HOM05D006132 ORTHO05D007305 2.6e-71 275.8 223 65.9
Zm00001eb053280 Zea mays HOM05D006132 ORTHO05D007305 4.6e-68 265.0 267 50.6
CSS0021543 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 1.8e-67 263.1 218 61.5
SHI18803 Sapria himalayana HOM05D006132 ORTHO05D007305 8.4e-62 244.2 315 49.5
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 3.1e-56 225.7 270 45.6
Cpa.g.sc7.234 Carica papaya HOM05D006132 ORTHO05D007305 2.6e-55 222.6 124 85.5
Zm00001eb053310 Zea mays HOM05D006132 ORTHO05D007305 7.2e-45 188.0 277 44.4
Carub.0003s0455 Capsella rubella HOM05D006132 ORTHO05D007305 7.9e-44 184.5 198 47.5
MBI04_g05153_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 3.1e-32 146.0 127 55.9
Zm00001eb053300 Zea mays HOM05D006132 ORTHO05D007305 5.3e-32 145.2 119 63.0
Glyma.18G112500 Glycine max HOM05D006132 ORTHO05D007305 2.0e-31 143.3 80 87.5
Os03g0685750 Oryza sativa ssp. japonica HOM05D006132 ORTHO05D007305 2.4e-24 119.8 135 46.7
Sabra06G0183100 Salix brachista HOM05D006132 ORTHO05D007305 6.5e-22 111.7 119 58.0
CiPaw.04G074200 Carya illinoinensis HOM05D006132 ORTHO05D007305 1.8e-19 103.6 61 80.3
MCO10G298 Micromonas commoda HOM05D006132 ORTHO05D007305 3.4e-18 99.4 459 25.1
Zm00001eb053290 Zea mays HOM05D006132 ORTHO05D007305 1.1e-16 94.4 68 66.2
CDE12G0288 Ceratophyllum demersum HOM05D004517 ORTHO05D005366 2.0e-15 90.1 74 63.5
Glyma.11G174000 Glycine max HOM05D006132 ORTHO05D007305 3.5e-15 89.4 71 59.2
MBI04_g44310_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 4.3e-13 82.4 69 55.1
Phvul.003G090001 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 2.8e-12 79.7 122 40.2
Psat3g153160 Pisum sativum HOM05D006816 ORTHO05D008517 2.0e-10 73.6 77 50.6
MD08G1109200 Malus domestica HOM05D006132 ORTHO05D007305 2.2e-09 70.1 71 50.7
Psat3g171600 Pisum sativum HOM05D006132 ORTHO05D007305 6.4e-09 68.6 89 44.9
SMO351G0355 Selaginella moellendorffii HOM05D023170 ORTHO05D007305 2.0e-07 63.5 71 53.5
Psat6g116480 Pisum sativum HOM05D006132 ORTHO05D007305 2.7e-07 63.2 63 47.6


User provided reference genes

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