Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G196600 Carya illinoinensis HOM05D005029 ORTHO05D006052 2.3e-168 595.5 307 100.0
Cfa013448 Carpinus fangiana HOM05D005029 ORTHO05D006052 6.8e-120 434.5 311 77.5
Haze_22015 Corylus avellana HOM05D005029 ORTHO05D006052 4.9e-118 428.3 311 76.5
CiPaw.08G032800 Carya illinoinensis HOM05D005029 ORTHO05D006052 4.1e-117 425.2 310 76.1
Dinv41171 Davidia involucrata HOM05D005029 ORTHO05D006052 2.7e-108 396.0 277 74.4
Duzib170G0048 Durio zibethinus HOM05D005029 ORTHO05D006052 6.4e-102 374.8 281 69.4
Cpa.g.c27842.2 Carica papaya HOM05D005029 ORTHO05D006052 4.6e-100 368.6 300 66.7
Gohir.D13G213100 Gossypium hirsutum HOM05D005029 ORTHO05D006052 6.6e-99 364.8 285 69.8
Gorai.013G243400 Gossypium raimondii HOM05D005029 ORTHO05D006052 6.6e-99 364.8 285 69.8
Gohir.A13G208700 Gossypium hirsutum HOM05D005029 ORTHO05D006052 6.2e-97 358.2 285 69.5
TWI34G0612 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 3.1e-96 355.9 279 69.2
Duzib150G1033 Durio zibethinus HOM05D005029 ORTHO05D006052 6.9e-96 354.8 282 66.7
COL.COLO4_08419 Corchorus olitorius HOM05D005029 ORTHO05D006052 1.5e-95 353.6 268 70.1
Manes.06G020200 Manihot esculenta HOM05D005029 ORTHO05D006052 3.4e-95 352.4 280 68.6
Thecc.09G185600 Theobroma cacao HOM05D005029 ORTHO05D006052 3.4e-95 352.4 286 67.8
CANSAT11G1104 Cannabis sativa HOM05D005029 ORTHO05D006052 4.5e-95 352.1 300 68.0
QL02p046501 Quercus lobata HOM05D005029 ORTHO05D006052 1.7e-94 350.1 390 55.1
TAR383G0036 Trochodendron aralioides HOM05D005029 ORTHO05D006052 7.9e-92 341.3 309 64.4
TAR626G1810 Trochodendron aralioides HOM05D005029 ORTHO05D006052 2.3e-91 339.7 299 64.2
Nn7g36649 Nelumbo nucifera HOM05D005029 ORTHO05D006052 8.7e-91 337.8 276 67.0
Medtr2g037940 Medicago truncatula HOM05D005029 ORTHO05D006052 3.3e-90 335.9 302 62.6
Potri.006G075900 Populus trichocarpa HOM05D005029 ORTHO05D006052 3.3e-90 335.9 318 60.1
Prupe.1G076300 Prunus persica HOM05D005029 ORTHO05D006052 1.3e-89 334.0 319 60.2
MSTRG.26542 Avicennia marina HOM05D005029 ORTHO05D006052 2.1e-89 333.2 285 62.8
MD16G1249500 Malus domestica HOM05D005029 ORTHO05D006052 2.1e-89 333.2 317 59.9
GSVIVG01010867001 Vitis vinifera HOM05D005029 ORTHO05D006052 4.8e-89 332.0 282 63.8
TWI32G0396 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 6.2e-89 331.6 307 62.5
Phvul.009G236500 Phaseolus vulgaris HOM05D005029 ORTHO05D006052 8.1e-89 331.3 302 61.6
Glyma.15G165600 Glycine max HOM05D005029 ORTHO05D006052 4.0e-88 328.9 266 68.0
Lj6g0016757 Lotus japonicus HOM05D005029 ORTHO05D006052 9.0e-88 327.8 267 65.9
Glyma.09G059300 Glycine max HOM05D005029 ORTHO05D006052 1.2e-87 327.4 295 62.4
VMungo1309G1415 Vigna mungo HOM05D005029 ORTHO05D006052 1.5e-87 327.0 297 62.6
Lalb_Chr11g0074801 Lupinus albus HOM05D005029 ORTHO05D006052 4.5e-87 325.5 296 63.9
Potri.018G143000 Populus trichocarpa HOM05D005029 ORTHO05D006052 4.5e-87 325.5 291 63.6
Actinidia01279 Actinidia chinensis HOM05D005029 ORTHO05D006052 2.2e-86 323.2 281 64.1
Eucgr.C00120 Eucalyptus grandis HOM05D005029 ORTHO05D006052 4.9e-86 322.0 314 61.8
Sabra18G0116800 Salix brachista HOM05D005029 ORTHO05D006052 6.4e-86 321.6 294 63.3
Nitab4.5_0000617g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 4.2e-85 318.9 283 62.2
MBI19_g21652_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 2.1e-84 316.6 272 61.8
Ca_02102_v3 Cicer arietinum L. HOM05D005029 ORTHO05D006052 7.9e-84 314.7 291 61.9
Dinv25437 Davidia involucrata HOM05D005029 ORTHO05D006052 1.0e-83 314.3 290 62.1
Peaxi162Scf01600g00016 Petunia axillaris HOM05D005029 ORTHO05D006052 6.7e-83 311.6 315 57.1
Psat1g145480 Pisum sativum HOM05D005029 ORTHO05D006052 1.5e-82 310.5 259 65.3
Aqoxy7G02787 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 1.9e-82 310.1 267 67.4
arahy.Tifrunner.gnm1.ann1.K38ATV Arachis hypogaea HOM05D005029 ORTHO05D006052 1.9e-82 310.1 280 65.0
Sabra06G0056600 Salix brachista HOM05D005029 ORTHO05D006052 1.6e-81 307.0 333 54.4
MBI13_g01742_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 2.1e-81 306.6 273 62.3
THA.LOC104803957 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 2.1e-81 306.6 294 61.6
THA.LOC104803983 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 2.1e-81 306.6 294 61.6
Nitab4.5_0008862g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 6.2e-81 305.1 317 58.0
Solyc07g008780.3 Solanum lycopersicum HOM05D005029 ORTHO05D006052 6.2e-81 305.1 315 56.8
Sopen07g004720 Solanum pennellii HOM05D005029 ORTHO05D006052 8.1e-81 304.7 315 58.7
Atru.chr7.763 Acer truncatum HOM05D005029 ORTHO05D006052 2.4e-80 303.1 315 58.7
Atru.chr7.783 Acer truncatum HOM05D005029 ORTHO05D006052 2.4e-80 303.1 315 58.7
EL10Ac8g18332 Beta vulgaris HOM05D005029 ORTHO05D006052 1.2e-79 300.8 314 56.1
PGSC0003DMG400028729 Solanum tuberosum HOM05D005029 ORTHO05D006052 2.0e-79 300.1 315 56.8
PSO170G2568 Papaver somniferum HOM05D005029 ORTHO05D006052 3.4e-79 299.3 309 58.6
PSO063G5693 Papaver somniferum HOM05D005029 ORTHO05D006052 1.7e-78 297.0 309 60.8
AUR62021347 Chenopodium quinoa HOM05D005029 ORTHO05D006052 2.2e-78 296.6 286 57.3
Cc00_g10760 Coffea canephora HOM05D005029 ORTHO05D006052 3.8e-78 295.8 280 60.4
TPR.G7936 Trifolium pratense HOM05D005029 ORTHO05D006052 8.4e-78 294.7 300 58.7
AUR62033261 Chenopodium quinoa HOM05D005029 ORTHO05D006052 1.9e-77 293.5 316 55.1
HanXRQChr13g0426591 Helianthus annuus HOM05D005029 ORTHO05D006052 5.5e-77 292.0 273 60.1
Sed0026503 Sechium edule HOM05D005029 ORTHO05D006052 1.2e-76 290.8 320 57.2
Ciclev10009010m.g Citrus clementina HOM05D005029 ORTHO05D006052 1.6e-76 290.4 274 62.0
FvH4_4g07340 Fragaria vesca HOM05D005029 ORTHO05D006052 2.1e-76 290.0 290 55.2
Nn2g14879 Nelumbo nucifera HOM05D005029 ORTHO05D006052 3.5e-76 289.3 273 62.6
RcHm_v2.0_Chr4g0399711 Rosa chinensis HOM05D005029 ORTHO05D006052 3.5e-76 289.3 319 52.0
FAN12G1304 Fragaria x ananassa HOM05D005029 ORTHO05D006052 6.0e-76 288.5 288 55.2
CsaV3_1G031840 Cucumis sativus L. HOM05D005029 ORTHO05D006052 2.3e-75 286.6 261 64.0
Lsat_1_v5_gn_3_137280 Lactuca sativa HOM05D005029 ORTHO05D006052 3.0e-75 286.2 268 60.4
DCAR_030818 Daucus carota HOM05D005029 ORTHO05D006052 6.7e-75 285.0 271 58.7
FAN17G0071 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.5e-74 283.9 303 53.1
Thhalv10025919m.g Eutrema salsugineum HOM05D005029 ORTHO05D006052 3.3e-74 282.7 314 57.6
Sp7g27770 Schrenkiella parvula HOM05D005029 ORTHO05D006052 3.3e-74 282.7 314 57.3
FAN07G2409 Fragaria x ananassa HOM05D005029 ORTHO05D006052 5.7e-74 282.0 266 56.8
MELO3C017433.2 Cucumis melo HOM05D005029 ORTHO05D006052 1.3e-73 280.8 323 55.7
AL7G22280 Arabidopsis lyrata HOM05D005029 ORTHO05D006052 2.8e-73 279.6 278 62.6
Hund26310 Selenicereus undatus HOM05D005029 ORTHO05D006052 2.8e-73 279.6 270 58.9
AT4G29960 Arabidopsis thaliana HOM05D005029 ORTHO05D006052 6.3e-73 278.5 276 60.1
Carub.0007s1068 Capsella rubella HOM05D005029 ORTHO05D006052 6.3e-73 278.5 313 56.9
THA.LOC104814654 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 1.8e-72 276.9 276 60.5
Ah.14g083530 Amaranthus hybridus HOM05D005029 ORTHO05D006052 2.4e-72 276.6 314 51.9
Ah.09g230060 Amaranthus hybridus HOM05D005029 ORTHO05D006052 5.3e-72 275.4 286 53.8
FAN22G0020 Fragaria x ananassa HOM05D005029 ORTHO05D006052 6.9e-72 275.0 287 53.7
Oeu034799.1 Olea europaea HOM05D005029 ORTHO05D006052 1.2e-71 274.2 250 61.2
SGA_v2.0_scaffold31G12759 Striga asiatica HOM05D005029 ORTHO05D006052 1.2e-71 274.2 301 55.5
Aa31LG2G20590 Aethionema arabicum HOM05D005029 ORTHO05D006052 5.9e-71 271.9 285 56.8
CARHR237880 Cardamine hirsuta HOM05D005029 ORTHO05D006052 5.9e-71 271.9 263 62.4
BolC3t21207H Brassica oleracea HOM05D005029 ORTHO05D006052 7.6e-71 271.6 257 59.9
Lalb_Chr13g0300031 Lupinus albus HOM05D005029 ORTHO05D006052 1.0e-70 271.2 285 58.2
BcaC01g01206 Brassica carinata HOM05D005029 ORTHO05D006052 5.0e-70 268.9 260 59.6
Sc16g0010440 Simmondsia chinensis HOM05D005029 ORTHO05D006052 7.2e-69 265.0 271 56.8
BraA08t33909Z Brassica rapa HOM05D005029 ORTHO05D006052 3.0e-67 259.6 310 52.9
Migut.L01885 Erythranthe guttata HOM05D005029 ORTHO05D006052 1.1e-66 257.7 290 55.5
SHI09006 Sapria himalayana HOM05D005029 ORTHO05D006052 5.7e-66 255.4 263 54.0
PGR142G1735 Punica granatum HOM05D005029 ORTHO05D006052 2.8e-65 253.1 276 56.9
ClCG06G013560 Citrullus lanatus HOM05D005029 ORTHO05D006052 4.8e-65 252.3 275 56.0
arahy.Tifrunner.gnm1.ann1.J7B49U Arachis hypogaea HOM05D005029 ORTHO05D006052 2.9e-62 243.0 162 80.2
ECA240G3783 Erigeron canadensis HOM05D005029 ORTHO05D006052 2.9e-62 243.0 230 59.1
CSS0012939 Camellia sinensis var. sinensis HOM05D005029 ORTHO05D006052 1.4e-61 240.7 307 52.1
BcaNung00506 Brassica carinata HOM05D005029 ORTHO05D006052 1.2e-60 237.7 249 59.8
A08p19470 Brassica napus HOM05D005029 ORTHO05D006052 2.7e-60 236.5 309 49.8
Oeu044675.2 Olea europaea HOM05D005029 ORTHO05D006052 2.6e-58 229.9 288 50.0
BcaC07g37961 Brassica carinata HOM05D005029 ORTHO05D006052 9.7e-58 228.0 300 51.0
ATR0626G110 Amborella trichopoda HOM05D005029 ORTHO05D006052 2.2e-57 226.9 283 48.4
C03p88970 Brassica napus HOM05D005029 ORTHO05D006052 6.3e-57 225.3 255 52.9
unitig_699.g19404 Utricularia gibba HOM05D005029 ORTHO05D006052 3.1e-56 223.0 283 48.8
BcaC09g51777 Brassica carinata HOM05D000106 ORTHO05D000160 1.5e-55 220.7 260 54.6
unitig_27.g24759 Utricularia gibba HOM05D005029 ORTHO05D006052 1.1e-53 214.5 281 48.8
BcaC09g51764 Brassica carinata HOM05D005029 ORTHO05D006052 4.2e-53 212.6 254 55.1
BraA01t00761Z Brassica rapa HOM05D005029 ORTHO05D006052 4.2e-53 212.6 260 53.1
A01p08140 Brassica napus HOM05D005029 ORTHO05D006052 3.0e-51 206.5 260 52.7
CDE04G3679 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 6.7e-51 205.3 264 46.2
C01p09110 Brassica napus HOM05D005029 ORTHO05D006052 2.0e-50 203.8 258 53.1
BolC1t00902H Brassica oleracea HOM05D005029 ORTHO05D006052 2.0e-50 203.8 320 47.2
CDE02G0552 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 5.3e-48 195.7 310 43.9
Migut.J00802 Erythranthe guttata HOM05D005029 ORTHO05D006052 5.5e-45 185.7 290 42.4
HPP92_004703 Vanilla planifolia HOM05D005029 ORTHO05D006052 3.0e-43 179.9 237 48.9
Lj5A672T26 Lonicera japonica HOM05D005029 ORTHO05D006052 3.3e-42 176.4 167 60.5
Duzib168G1982 Durio zibethinus HOM05D005029 ORTHO05D006052 5.7e-42 175.6 154 64.9
Zm00001eb071460 Zea mays HOM05D005029 ORTHO05D006052 3.1e-40 169.9 249 45.0
Rhsim01G0118000 Rhododendron simsii HOM05D005029 ORTHO05D006052 4.1e-40 169.5 225 44.0
Os04g0606800 Oryza sativa ssp. japonica HOM05D005029 ORTHO05D006052 5.3e-40 169.1 244 43.9
AagrBONN_evm.TU.Sc2ySwM_368.2110 Anthoceros agrestis HOM05D005029 ORTHO05D006052 2.7e-39 166.8 286 40.9
Mapoly0076s0086 Marchantia polymorpha HOM05D005029 ORTHO05D006052 1.0e-38 164.9 294 38.1
C07p57380 Brassica napus HOM05D005029 ORTHO05D006052 1.3e-38 164.5 170 60.0
Zm00001eb430500 Zea mays HOM05D005029 ORTHO05D006052 3.8e-38 162.9 247 43.7
SEGI_23735 Sequoiadendron giganteum HOM05D005029 ORTHO05D006052 2.5e-37 160.2 275 41.1
Pp3c9_8340 Physcomitrium patens HOM05D005029 ORTHO05D006052 1.6e-31 141.0 286 34.6
SMO358G0278 Selaginella moellendorffii HOM05D005029 ORTHO05D006052 2.7e-31 140.2 282 39.0
BcaC05g25672 Brassica carinata HOM05D005029 ORTHO05D006052 1.0e-30 138.3 180 48.9
BcaB06g28011 Brassica carinata HOM05D005029 ORTHO05D006052 1.2e-26 124.8 99 70.7
A03p59350 Brassica napus HOM05D005029 ORTHO05D006052 5.7e-26 122.5 258 38.0
vmacro20818 Vaccinium macrocarpon HOM05D005029 ORTHO05D006052 2.3e-22 110.5 94 55.3
BolC6t39910H Brassica oleracea HOM05D005029 ORTHO05D006052 6.1e-20 102.4 192 38.0
Aa31LG8G16260 Aethionema arabicum HOM05D005029 ORTHO05D006052 2.0e-15 87.4 76 56.6
Lj5C672T2 Lonicera japonica HOM05D005029 ORTHO05D006052 3.0e-14 83.6 57 68.4
BcaB04g18770 Brassica carinata HOM05D005029 ORTHO05D006052 1.9e-13 80.9 73 67.1
Aqoxy377s001 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 3.3e-13 80.1 76 55.3
BolC5t30251H Brassica oleracea HOM05D005029 ORTHO05D006052 4.3e-13 79.7 62 59.7
CBR_g52634 Chara braunii HOM05D005029 ORTHO05D006052 9.5e-13 78.6 155 35.5
BcaB06g26390 Brassica carinata HOM05D005029 ORTHO05D006052 9.8e-10 68.6 134 37.3
MBI13_g34035_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 3.5e-07 60.1 77 44.2
Pp3c9_14880 Physcomitrium patens HOM05D005029 ORTHO05D006052 1.7e-06 57.8 121 28.9


User provided reference genes

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