Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G193700 Carya illinoinensis HOM05D004757 ORTHO05D005743 8.2e-70 266.9 133 100.0
Cfa013398 Carpinus fangiana HOM05D004757 ORTHO05D005743 6.3e-54 214.2 133 80.5
ClCG06G013460 Citrullus lanatus HOM05D004757 ORTHO05D005743 4.8e-46 188.0 138 71.7
Atru.chr7.878 Acer truncatum HOM05D004757 ORTHO05D005743 1.8e-45 186.0 136 73.5
Manes.06G022800 Manihot esculenta HOM05D004757 ORTHO05D005743 1.8e-45 186.0 135 74.1
Potri.006G166400 Populus trichocarpa HOM05D004757 ORTHO05D005743 9.1e-45 183.7 146 69.9
Manes.14G157383 Manihot esculenta HOM05D004757 ORTHO05D005743 1.2e-44 183.3 135 71.1
Haze_21940 Corylus avellana HOM05D004757 ORTHO05D005743 2.0e-44 182.6 115 80.0
TWI63G0987 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 5.9e-44 181.0 136 70.6
CsaV3_1G031720 Cucumis sativus L. HOM05D004757 ORTHO05D005743 1.7e-43 179.5 138 69.6
TWI34G1741 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 2.9e-43 178.7 136 69.1
Gohir.A08G083700 Gossypium hirsutum HOM05D004757 ORTHO05D005743 8.5e-43 177.2 139 67.6
Gohir.D08G093400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 1.9e-42 176.0 139 67.6
Duzib150G0244 Durio zibethinus HOM05D004757 ORTHO05D005743 5.5e-42 174.5 140 65.0
Lj4g0011233 Lotus japonicus HOM05D004757 ORTHO05D005743 5.5e-42 174.5 135 71.9
CiPaw.08G035200 Carya illinoinensis HOM05D004757 ORTHO05D005743 4.7e-41 171.4 141 66.0
Sed0015670 Sechium edule HOM05D004757 ORTHO05D005743 8.0e-41 170.6 136 66.2
Sed0003925 Sechium edule HOM05D004757 ORTHO05D005743 1.4e-40 169.9 138 64.5
QL02p098330 Quercus lobata HOM05D004757 ORTHO05D005743 1.8e-40 169.5 168 60.7
Duzib170G0153 Durio zibethinus HOM05D004757 ORTHO05D005743 3.9e-40 168.3 140 65.0
Duzib168G0914 Durio zibethinus HOM05D004757 ORTHO05D005743 6.7e-40 167.5 138 64.5
Thecc.09G175100 Theobroma cacao HOM05D004757 ORTHO05D005743 1.5e-39 166.4 141 63.1
Medtr4g127810 Medicago truncatula HOM05D004757 ORTHO05D005743 2.0e-39 166.0 139 64.7
Phvul.003G144000 Phaseolus vulgaris HOM05D004757 ORTHO05D005743 2.6e-39 165.6 133 66.9
AT2G18910 Arabidopsis thaliana HOM05D004757 ORTHO05D005743 3.3e-39 165.2 134 67.2
BcaB07g31638 Brassica carinata HOM05D004757 ORTHO05D005743 3.3e-39 165.2 134 67.2
AL3G53010 Arabidopsis lyrata HOM05D004757 ORTHO05D005743 4.4e-39 164.9 134 67.2
Glyma.17G062100 Glycine max HOM05D004757 ORTHO05D005743 4.4e-39 164.9 134 67.2
Potri.018G090900 Populus trichocarpa HOM05D004757 ORTHO05D005743 5.7e-39 164.5 145 64.8
Glyma.13G097500 Glycine max HOM05D004757 ORTHO05D005743 7.4e-39 164.1 134 68.7
BcaC04g22879 Brassica carinata HOM05D004757 ORTHO05D005743 2.8e-38 162.2 134 67.9
BolC3t18202H Brassica oleracea HOM05D004757 ORTHO05D005743 2.8e-38 162.2 134 62.7
A07p01750 Brassica napus HOM05D004757 ORTHO05D005743 3.7e-38 161.8 134 64.9
Cpa.g.sc95.44 Carica papaya HOM05D004757 ORTHO05D005743 6.3e-38 161.0 135 68.1
MELO3C017451.2 Cucumis melo HOM05D004757 ORTHO05D005743 6.3e-38 161.0 120 70.8
A09p12120 Brassica napus HOM05D004757 ORTHO05D005743 1.1e-37 160.2 135 66.7
MD16G1255800 Malus domestica HOM05D004757 ORTHO05D005743 1.1e-37 160.2 146 64.4
C03p59380 Brassica napus HOM05D004757 ORTHO05D005743 1.4e-37 159.8 134 61.9
Carub.0003s3315 Capsella rubella HOM05D004757 ORTHO05D005743 1.8e-37 159.5 134 64.9
THA.LOC104803943 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 1.8e-37 159.5 134 61.9
BolC9t54334H Brassica oleracea HOM05D004757 ORTHO05D005743 3.1e-37 158.7 144 63.2
FAN17G1906 Fragaria x ananassa HOM05D004757 ORTHO05D005743 3.1e-37 158.7 134 64.2
TPR.G5446 Trifolium pratense HOM05D004757 ORTHO05D005743 3.1e-37 158.7 141 61.7
C07p03670 Brassica napus HOM05D004757 ORTHO05D005743 4.1e-37 158.3 134 64.2
BolC7t40764H Brassica oleracea HOM05D004757 ORTHO05D005743 4.1e-37 158.3 134 64.2
FvH4_4g07900 Fragaria vesca HOM05D004757 ORTHO05D005743 7.0e-37 157.5 139 62.6
RcHm_v2.0_Chr4g0401201 Rosa chinensis HOM05D004757 ORTHO05D005743 7.0e-37 157.5 138 63.0
Aa31LG8G16000 Aethionema arabicum HOM05D004757 ORTHO05D005743 9.1e-37 157.1 134 61.9
BraA09t36856Z Brassica rapa HOM05D004757 ORTHO05D005743 9.1e-37 157.1 135 66.7
Gorai.004G099000 Gossypium raimondii HOM05D004757 ORTHO05D005743 1.2e-36 156.8 130 64.6
Lalb_Chr13g0300141 Lupinus albus HOM05D004757 ORTHO05D005743 1.6e-36 156.4 138 60.9
Prupe.1G082700 Prunus persica HOM05D004757 ORTHO05D005743 1.6e-36 156.4 134 66.4
TAR626G1857 Trochodendron aralioides HOM05D004757 ORTHO05D005743 3.5e-36 155.2 138 63.0
CARHR109470 Cardamine hirsuta HOM05D004757 ORTHO05D005743 4.5e-36 154.8 134 63.4
Gorai.004G027500 Gossypium raimondii HOM05D004757 ORTHO05D005743 4.5e-36 154.8 146 61.0
C09p14310 Brassica napus HOM05D004757 ORTHO05D005743 1.3e-35 153.3 144 62.5
BcaB03g16684 Brassica carinata HOM05D004757 ORTHO05D005743 1.7e-35 152.9 134 62.7
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 2.2e-35 152.5 115 69.6
Gohir.D08G030000 Gossypium hirsutum HOM05D004757 ORTHO05D005743 2.2e-35 152.5 146 60.3
A06p33080 Brassica napus HOM05D004757 ORTHO05D005743 2.9e-35 152.1 131 59.5
Gohir.A08G019400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 2.9e-35 152.1 144 61.1
Psat4g012760 Pisum sativum HOM05D004757 ORTHO05D005743 6.5e-35 151.0 143 60.1
Actinidia01305 Actinidia chinensis HOM05D004757 ORTHO05D005743 1.1e-34 150.2 132 61.4
BraA06t26238Z Brassica rapa HOM05D004757 ORTHO05D005743 1.9e-34 149.4 134 59.0
MD13G1249500 Malus domestica HOM05D004757 ORTHO05D005743 3.2e-34 148.7 146 61.0
Sp3g32380 Schrenkiella parvula HOM05D004757 ORTHO05D005743 3.2e-34 148.7 134 59.7
FAN07G0988 Fragaria x ananassa HOM05D004757 ORTHO05D005743 7.2e-34 147.5 162 54.3
FAN22G2108 Fragaria x ananassa HOM05D004757 ORTHO05D005743 7.2e-34 147.5 162 54.3
Actinidia19844 Actinidia chinensis HOM05D004757 ORTHO05D005743 9.4e-34 147.1 129 62.8
Hma1.2p1_2317F.1_g319740 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 3.6e-33 145.2 134 61.2
Lalb_Chr12g0199461 Lupinus albus HOM05D004757 ORTHO05D005743 3.6e-33 145.2 129 62.0
Ciclev10009829m.g Citrus clementina HOM05D004757 ORTHO05D005743 6.1e-33 144.4 122 67.2
FAN12G2780 Fragaria x ananassa HOM05D004757 ORTHO05D005743 6.1e-33 144.4 162 53.7
THA.LOC104803488 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 8.0e-33 144.1 134 56.0
Hma1.2p1_1303F.1_g274440 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 1.4e-32 143.3 156 53.2
Thhalv10022848m.g Eutrema salsugineum HOM05D004757 ORTHO05D005743 1.8e-32 142.9 134 59.7
Ca_21237_v3 Cicer arietinum L. HOM05D004757 ORTHO05D005743 2.3e-32 142.5 118 67.8
BcaC06g36489 Brassica carinata HOM05D004757 ORTHO05D005743 3.0e-32 142.1 114 67.5
Hma1.2p1_0935F.1_g238550 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 5.2e-32 141.4 134 61.2
VMungo1215G0044 Vigna mungo HOM05D004757 ORTHO05D005743 3.4e-31 138.7 115 64.3
Lsat_1_v5_gn_7_54961 Lactuca sativa HOM05D004757 ORTHO05D005743 5.7e-31 137.9 132 59.8
PGR044G0017 Punica granatum HOM05D004757 ORTHO05D005743 9.7e-31 137.1 128 58.6
Sc08g0005260 Simmondsia chinensis HOM05D004757 ORTHO05D005743 9.7e-31 137.1 132 56.1
Dinv19553 Davidia involucrata HOM05D004757 ORTHO05D005743 1.3e-30 136.7 126 62.7
HanXRQChr09g0254201 Helianthus annuus HOM05D004757 ORTHO05D005743 1.7e-30 136.3 121 62.0
Peaxi162Scf01558g00012 Petunia axillaris HOM05D004757 ORTHO05D005743 1.7e-30 136.3 155 50.3
Solyc07g006960.3 Solanum lycopersicum HOM05D004757 ORTHO05D005743 2.2e-30 136.0 138 55.1
HanXRQChr09g0244371 Helianthus annuus HOM05D004757 ORTHO05D005743 3.7e-30 135.2 115 60.9
EL10Ac8g18296 Beta vulgaris HOM05D004757 ORTHO05D005743 1.4e-29 133.3 136 55.9
CDE04G2108 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 1.4e-29 133.3 136 55.1
ECA240G0762 Erigeron canadensis HOM05D004757 ORTHO05D005743 4.1e-29 131.7 135 55.6
Hund09034 Selenicereus undatus HOM05D004757 ORTHO05D005743 4.1e-29 131.7 139 55.4
CANSAT11G1025 Cannabis sativa HOM05D004757 ORTHO05D005743 5.3e-29 131.3 143 55.2
PSO170G5353 Papaver somniferum HOM05D004757 ORTHO05D005743 5.3e-29 131.3 181 44.8
ECA234G2687 Erigeron canadensis HOM05D004757 ORTHO05D005743 7.0e-29 131.0 139 54.7
Ah.14g083740 Amaranthus hybridus HOM05D004757 ORTHO05D005743 9.1e-29 130.6 139 55.4
PSO063G6152 Papaver somniferum HOM05D004757 ORTHO05D005743 1.6e-28 129.8 181 43.6
Eucgr.C00145 Eucalyptus grandis HOM05D004757 ORTHO05D005743 2.0e-28 129.4 116 59.5
unitig_21.g20652 Utricularia gibba HOM05D004757 ORTHO05D005743 4.5e-28 128.3 135 53.3
Sopen07g003050 Solanum pennellii HOM05D004757 ORTHO05D005743 7.7e-28 127.5 133 54.9
PGR142G2781 Punica granatum HOM05D004757 ORTHO05D005743 1.0e-27 127.1 155 51.6
GSVIVG01035530001 Vitis vinifera HOM05D004757 ORTHO05D005743 1.0e-27 127.1 135 53.3
CDE02G3269 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 1.3e-27 126.7 128 53.9
ECA236G5014 Erigeron canadensis HOM05D004757 ORTHO05D005743 1.7e-27 126.3 125 54.4
Lsat_1_v5_gn_5_85101 Lactuca sativa HOM05D004757 ORTHO05D005743 1.7e-27 126.3 137 52.6
Nitab4.5_0010128g0010 Nicotiana tabacum HOM05D004757 ORTHO05D005743 2.2e-27 125.9 150 48.0
Migut.K00229 Erythranthe guttata HOM05D004757 ORTHO05D005743 2.9e-27 125.6 134 53.0
Cc06_g12990 Coffea canephora HOM05D004757 ORTHO05D005743 5.0e-27 124.8 160 48.8
Nn8g40409 Nelumbo nucifera HOM05D004757 ORTHO05D005743 6.5e-27 124.4 157 48.4
TAR383G0800 Trochodendron aralioides HOM05D004757 ORTHO05D005743 1.9e-26 122.9 127 56.7
Sabra06G0128000 Salix brachista HOM05D004757 ORTHO05D005743 2.5e-26 122.5 160 51.2
Aqoxy7G02958 Aquilegia oxysepala HOM05D004757 ORTHO05D005743 4.2e-26 121.7 132 53.8
Migut.J01503 Erythranthe guttata HOM05D004757 ORTHO05D005743 1.2e-25 120.2 137 53.3
MBI16_g31788_MAGBIO Magnolia biondii HOM05D004757 ORTHO05D005743 1.2e-25 120.2 145 51.7
Sc14g0001290 Simmondsia chinensis HOM05D004757 ORTHO05D005743 2.7e-25 119.0 120 54.2
PGSC0003DMG400018757 Solanum tuberosum HOM05D004757 ORTHO05D005743 1.0e-24 117.1 131 55.0
MSTRG.19719 Avicennia marina HOM05D004757 ORTHO05D005743 2.3e-24 115.9 147 47.6
Eucgr.L02640 Eucalyptus grandis HOM05D004757 ORTHO05D005743 4.0e-24 115.2 110 53.6
Nn2g12725 Nelumbo nucifera HOM05D004757 ORTHO05D005743 1.2e-23 113.6 140 48.6
TAR636G1688 Trochodendron aralioides HOM05D004757 ORTHO05D005743 2.0e-23 112.8 120 55.0
SalBow6G1691 Salvia bowleyana HOM05D004757 ORTHO05D005743 4.4e-23 111.7 141 49.6
ATR0580G064 Amborella trichopoda HOM05D004757 ORTHO05D005743 5.7e-23 111.3 124 49.2
DCAR_020127 Daucus carota HOM05D004757 ORTHO05D005743 5.7e-23 111.3 137 52.6
Rhsim01G0003200 Rhododendron simsii HOM05D004757 ORTHO05D005743 5.7e-23 111.3 129 53.5
CAN.G1464.4 Capsicum annuum HOM05D004757 ORTHO05D005743 7.5e-23 110.9 106 55.7
Sabra18G0078100 Salix brachista HOM05D004757 ORTHO05D005743 7.5e-23 110.9 157 49.0
HanXRQChr10g0308501 Helianthus annuus HOM05D004757 ORTHO05D005743 9.8e-23 110.5 125 52.8
Lsat_1_v5_gn_8_68041 Lactuca sativa HOM05D004757 ORTHO05D005743 9.8e-23 110.5 109 56.9
Oeu025694.3 Olea europaea HOM05D004757 ORTHO05D005743 1.7e-22 109.8 129 51.9
HanXRQChr05g0142021 Helianthus annuus HOM05D004757 ORTHO05D005743 2.2e-22 109.4 108 54.6
Oeu025209.1 Olea europaea HOM05D004757 ORTHO05D005743 2.2e-22 109.4 130 50.8
vmacro13132 Vaccinium macrocarpon HOM05D004757 ORTHO05D005743 4.8e-22 108.2 169 43.8
HPP92_015369 Vanilla planifolia HOM05D004757 ORTHO05D005743 2.4e-21 105.9 149 45.6
CSS0015413 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 1.6e-20 103.2 114 50.0
CSS0012735 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 1.3e-19 100.1 131 48.9
ATR0030G045 Amborella trichopoda HOM05D004757 ORTHO05D005743 2.3e-19 99.4 126 47.6
MSTRG.6239 Avicennia marina HOM05D004757 ORTHO05D005743 6.6e-19 97.8 123 48.8
SGA_v2.0_scaffold66G22433 Striga asiatica HOM05D004757 ORTHO05D005743 6.6e-19 97.8 120 49.2
Ah.09g229970 Amaranthus hybridus HOM05D004757 ORTHO05D005743 3.6e-17 92.0 152 40.8
Peaxi162Scf00200g00183 Petunia axillaris HOM05D004757 ORTHO05D005743 1.0e-16 90.5 93 53.8
Os02g0461900 Oryza sativa ssp. japonica HOM05D004757 ORTHO05D005743 6.8e-16 87.8 113 48.7
Zm00001eb180540 Zea mays HOM05D004757 ORTHO05D005743 8.9e-16 87.4 182 35.2
Dinv41223 Davidia involucrata HOM05D004757 ORTHO05D005743 7.5e-15 84.3 108 51.9
Zm00001eb420280 Zea mays HOM05D004757 ORTHO05D005743 7.5e-15 84.3 152 40.1
Peaxi162Scf00200g01819 Petunia axillaris HOM05D004757 ORTHO05D005743 2.2e-14 82.8 89 50.6
AUR62043442 Chenopodium quinoa HOM05D000216 ORTHO05D003518 2.8e-14 82.4 87 47.1
Zm00001eb236700 Zea mays HOM05D004757 ORTHO05D005743 2.4e-13 79.3 175 34.9
Zm00001eb087060 Zea mays HOM05D004757 ORTHO05D005743 5.4e-13 78.2 68 58.8
AUR62033229 Chenopodium quinoa HOM05D004757 ORTHO05D005743 4.3e-10 68.6 94 47.9
Peaxi162Scf00200g00182 Petunia axillaris HOM05D004757 ORTHO05D005743 7.3e-10 67.8 101 42.6
AUR62021312 Chenopodium quinoa HOM05D004757 ORTHO05D005743 1.4e-08 63.5 94 45.7
Peaxi162Scf00627g00011 Petunia axillaris HOM05D004757 ORTHO05D005743 1.4e-08 63.5 100 41.0


User provided reference genes

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