Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G188100 Carya illinoinensis HOM05D003653 ORTHO05D004249 6.8e-72 273.9 135 100.0
CiPaw.07G188300 Carya illinoinensis HOM05D003653 ORTHO05D004249 1.2e-55 219.9 121 91.7
CiPaw.08G039100 Carya illinoinensis HOM05D003653 ORTHO05D004249 1.7e-43 179.5 119 77.3
Cfa000655 Carpinus fangiana HOM05D003653 ORTHO05D004249 7.3e-42 174.1 121 76.0
Aa31LG4G3690 Aethionema arabicum HOM05D003653 ORTHO05D004249 5.1e-35 151.4 119 67.2
Carub.0002s2017 Capsella rubella HOM05D003653 ORTHO05D004249 6.6e-35 151.0 119 67.2
Carub.0001s3831 Capsella rubella HOM05D003653 ORTHO05D004249 1.5e-34 149.8 119 66.4
AL2G33210 Arabidopsis lyrata HOM05D003653 ORTHO05D004249 3.3e-34 148.7 119 66.4
AT1G73430 Arabidopsis thaliana HOM05D003653 ORTHO05D004249 3.3e-34 148.7 119 66.4
TAR626G0857 Trochodendron aralioides HOM05D003653 ORTHO05D004249 5.6e-34 147.9 117 64.1
Thhalv10018146m.g Eutrema salsugineum HOM05D003653 ORTHO05D004249 2.1e-33 146.0 119 64.7
CARHR066480 Cardamine hirsuta HOM05D003653 ORTHO05D004249 2.8e-33 145.6 119 65.5
BcaNung06460 Brassica carinata HOM05D003653 ORTHO05D004249 4.7e-33 144.8 112 67.9
Sp5g28630 Schrenkiella parvula HOM05D003653 ORTHO05D004249 8.1e-33 144.1 119 64.7
GSVIVG01015003001 Vitis vinifera HOM05D003653 ORTHO05D004249 1.8e-32 142.9 117 65.0
Sc18g0002910 Simmondsia chinensis HOM05D003653 ORTHO05D004249 2.4e-32 142.5 119 63.0
Oeu028863.2 Olea europaea HOM05D003653 ORTHO05D004249 4.0e-32 141.7 117 63.2
C02p31060 Brassica napus HOM05D003653 ORTHO05D004249 5.2e-32 141.4 118 64.4
Gohir.D06G081700 Gossypium hirsutum HOM05D003653 ORTHO05D004249 6.9e-32 141.0 111 68.5
Gorai.010G095200 Gossypium raimondii HOM05D003653 ORTHO05D004249 6.9e-32 141.0 111 68.5
THA.LOC104812181 Tarenaya hassleriana HOM05D003653 ORTHO05D004249 1.2e-31 140.2 117 62.4
BraA02t06914Z Brassica rapa HOM05D003653 ORTHO05D004249 1.5e-31 139.8 118 63.6
AUR62025332 Chenopodium quinoa HOM05D003653 ORTHO05D004249 1.5e-31 139.8 119 63.0
BcaC08g46765 Brassica carinata HOM05D003653 ORTHO05D004249 2.0e-31 139.4 113 63.7
A07p39380 Brassica napus HOM05D003653 ORTHO05D004249 2.0e-31 139.4 113 63.7
C06p47610 Brassica napus HOM05D003653 ORTHO05D004249 2.0e-31 139.4 113 63.7
Nn8g38522 Nelumbo nucifera HOM05D003653 ORTHO05D004249 3.4e-31 138.7 119 62.2
Hund08907 Selenicereus undatus HOM05D003653 ORTHO05D004249 3.4e-31 138.7 119 59.7
AUR62028329 Chenopodium quinoa HOM05D003653 ORTHO05D004249 5.8e-31 137.9 119 63.0
BolC2t09153H Brassica oleracea HOM05D003653 ORTHO05D004249 7.6e-31 137.5 126 60.3
Manes.03G045400 Manihot esculenta HOM05D003653 ORTHO05D004249 7.6e-31 137.5 117 63.2
vmacro03339 Vaccinium macrocarpon HOM05D003653 ORTHO05D004249 7.6e-31 137.5 118 61.0
EL10Ac8g18959 Beta vulgaris HOM05D003653 ORTHO05D004249 9.9e-31 137.1 113 61.1
Gohir.A06G084400 Gossypium hirsutum HOM05D003653 ORTHO05D004249 1.3e-30 136.7 111 66.7
CSS0022852 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 1.7e-30 136.3 113 61.9
Nitab4.5_0001114g0100 Nicotiana tabacum HOM05D003653 ORTHO05D004249 1.7e-30 136.3 113 66.4
CANSAT56G3945 Cannabis sativa HOM05D003653 ORTHO05D004249 2.9e-30 135.6 117 62.4
Duzib187G0285 Durio zibethinus HOM05D003653 ORTHO05D004249 2.9e-30 135.6 118 63.6
PGSC0003DMG400026759 Solanum tuberosum HOM05D003653 ORTHO05D004249 2.9e-30 135.6 111 66.7
Gohir.A13G188800 Gossypium hirsutum HOM05D003653 ORTHO05D004249 3.8e-30 135.2 120 63.3
Gohir.D13G195800 Gossypium hirsutum HOM05D003653 ORTHO05D004249 3.8e-30 135.2 120 63.3
RcHm_v2.0_Chr2g0096121 Rosa chinensis HOM05D003653 ORTHO05D004249 3.8e-30 135.2 113 62.8
BraA07t31487Z Brassica rapa HOM05D003653 ORTHO05D004249 4.9e-30 134.8 117 61.5
Duzib150G1359 Durio zibethinus HOM05D003653 ORTHO05D004249 4.9e-30 134.8 111 65.8
MBI13_g01694_MAGBIO Magnolia biondii HOM05D003653 ORTHO05D004249 4.9e-30 134.8 119 61.3
Thecc.09G069200 Theobroma cacao HOM05D003653 ORTHO05D004249 4.9e-30 134.8 111 65.8
ClCG08G005090 Citrullus lanatus HOM05D003653 ORTHO05D004249 6.4e-30 134.4 108 66.7
BolC6t39799H Brassica oleracea HOM05D003653 ORTHO05D004249 8.4e-30 134.0 117 61.5
Prupe.7G190900 Prunus persica HOM05D003653 ORTHO05D004249 8.4e-30 134.0 114 61.4
SalBow5G5324 Salvia bowleyana HOM05D003653 ORTHO05D004249 8.4e-30 134.0 109 66.1
Eucgr.C00763 Eucalyptus grandis HOM05D003653 ORTHO05D004249 1.1e-29 133.7 119 60.5
Gorai.013G221900 Gossypium raimondii HOM05D003653 ORTHO05D004249 1.1e-29 133.7 120 63.3
Cc06_g12780 Coffea canephora HOM05D003653 ORTHO05D004249 1.4e-29 133.3 109 64.2
Sopen04g003800 Solanum pennellii HOM05D003653 ORTHO05D004249 1.9e-29 132.9 111 65.8
MELO3C022888.2 Cucumis melo HOM05D003653 ORTHO05D004249 2.4e-29 132.5 108 63.0
Migut.L01598 Erythranthe guttata HOM05D003653 ORTHO05D004249 2.4e-29 132.5 118 61.0
Hma1.2p1_0179F.1_g079140 Hydrangea macrophylla HOM05D003653 ORTHO05D004249 2.4e-29 132.5 113 61.9
MD15G1224400 Malus domestica HOM05D003653 ORTHO05D004249 2.4e-29 132.5 114 59.6
Manes.16G089600 Manihot esculenta HOM05D003653 ORTHO05D004249 2.4e-29 132.5 117 60.7
Solyc04g008640.3 Solanum lycopersicum HOM05D003653 ORTHO05D004249 3.2e-29 132.1 111 66.7
Haze_06172 Corylus avellana HOM05D003653 ORTHO05D004249 4.2e-29 131.7 91 74.7
MSTRG.26501 Avicennia marina HOM05D003653 ORTHO05D004249 7.1e-29 131.0 111 63.1
CAN.G137.40 Capsicum annuum HOM05D003653 ORTHO05D004249 1.2e-28 130.2 119 62.2
CsaV3_5G037140 Cucumis sativus L. HOM05D003653 ORTHO05D004249 1.2e-28 130.2 108 61.1
Dinv11396 Davidia involucrata HOM05D003653 ORTHO05D004249 1.6e-28 129.8 116 57.8
Lj6C86G4 Lonicera japonica HOM05D003653 ORTHO05D004249 1.6e-28 129.8 119 57.1
Actinidia05573 Actinidia chinensis HOM05D003653 ORTHO05D004249 2.1e-28 129.4 110 61.8
MD02G1104000 Malus domestica HOM05D003653 ORTHO05D004249 2.1e-28 129.4 119 59.7
Peaxi162Scf00320g00019 Petunia axillaris HOM05D003653 ORTHO05D004249 2.1e-28 129.4 110 64.5
Rhsim06G0154000 Rhododendron simsii HOM05D003653 ORTHO05D004249 2.1e-28 129.4 127 55.9
RcHm_v2.0_Chr2g0096281 Rosa chinensis HOM05D003653 ORTHO05D004249 2.1e-28 129.4 113 61.1
FAN26G2747 Fragaria x ananassa HOM05D003653 ORTHO05D004249 3.5e-28 128.6 111 58.6
Glyma.13G114900 Glycine max HOM05D003653 ORTHO05D004249 4.6e-28 128.3 108 63.0
Lj6A103G48 Lonicera japonica HOM05D003653 ORTHO05D004249 4.6e-28 128.3 119 57.1
Lalb_Chr13g0299181 Lupinus albus HOM05D003653 ORTHO05D004249 4.6e-28 128.3 116 56.0
FAN26G0928 Fragaria x ananassa HOM05D003653 ORTHO05D004249 6.0e-28 127.9 111 58.6
Glyma.17G045100 Glycine max HOM05D003653 ORTHO05D004249 6.0e-28 127.9 108 63.0
QL02p096242 Quercus lobata HOM05D003653 ORTHO05D004249 6.0e-28 127.9 121 57.0
FvH4_1g09540 Fragaria vesca HOM05D003653 ORTHO05D004249 1.0e-27 127.1 111 57.7
Zm00001eb040740 Zea mays HOM05D003653 ORTHO05D004249 1.0e-27 127.1 113 59.3
CDE09G1393 Ceratophyllum demersum HOM05D003653 ORTHO05D004249 1.3e-27 126.7 117 58.1
QL02p096361 Quercus lobata HOM05D003653 ORTHO05D004249 1.3e-27 126.7 121 57.0
TWI32G0371 Tripterygium wilfordii HOM05D003653 ORTHO05D004249 1.3e-27 126.7 117 59.8
Ciclev10007512m.g Citrus clementina HOM05D003653 ORTHO05D004249 2.3e-27 125.9 119 58.0
Potri.010G138900 Populus trichocarpa HOM05D003653 ORTHO05D004249 2.3e-27 125.9 117 59.0
Sabra10G0107200 Salix brachista HOM05D003653 ORTHO05D004249 2.3e-27 125.9 117 59.0
FAN19G0402 Fragaria x ananassa HOM05D003653 ORTHO05D004249 3.9e-27 125.2 111 56.8
FAN28G1145 Fragaria x ananassa HOM05D003653 ORTHO05D004249 3.9e-27 125.2 111 56.8
Ah.09g228870 Amaranthus hybridus HOM05D003653 ORTHO05D004249 5.1e-27 124.8 113 56.6
arahy.Tifrunner.gnm1.ann1.H5KB4L Arachis hypogaea HOM05D003653 ORTHO05D004249 5.1e-27 124.8 110 59.1
Phvul.003G126900 Phaseolus vulgaris HOM05D003653 ORTHO05D004249 5.1e-27 124.8 110 60.9
COL.COLO4_21195 Corchorus olitorius HOM05D003653 ORTHO05D004249 8.7e-27 124.0 111 61.3
Sed0017256 Sechium edule HOM05D003653 ORTHO05D004249 1.1e-26 123.6 117 60.7
Atru.chr7.1784 Acer truncatum HOM05D003653 ORTHO05D004249 1.5e-26 123.2 117 56.4
FAN23G3130 Fragaria x ananassa HOM05D003653 ORTHO05D004249 4.3e-26 121.7 111 55.0
Solyc07g017530.4 Solanum lycopersicum HOM05D003653 ORTHO05D004249 4.3e-26 121.7 119 60.5
Lj4g0027638 Lotus japonicus HOM05D003653 ORTHO05D004249 5.6e-26 121.3 108 61.1
Lsat_1_v5_gn_9_48260 Lactuca sativa HOM05D003653 ORTHO05D004249 9.6e-26 120.6 117 53.8
TPR.G12688 Trifolium pratense HOM05D003653 ORTHO05D004249 9.6e-26 120.6 108 60.2
Psat4g019560 Pisum sativum HOM05D003653 ORTHO05D004249 6.2e-25 117.9 108 59.3
DCAR_028533 Daucus carota HOM05D003653 ORTHO05D004249 8.1e-25 117.5 110 57.3
SGA_v2.0_scaffold55G19872 Striga asiatica HOM05D003653 ORTHO05D004249 8.1e-25 117.5 141 50.4
Medtr4g124570 Medicago truncatula HOM05D003653 ORTHO05D004249 1.1e-24 117.1 109 59.6
Aqoxy4G00013 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 5.3e-24 114.8 111 57.7
ATR0099G047 Amborella trichopoda HOM05D003653 ORTHO05D004249 1.2e-23 113.6 111 52.3
Aqoxy7G04180 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 1.2e-23 113.6 109 56.0
ECA247G3145 Erigeron canadensis HOM05D003653 ORTHO05D004249 1.5e-23 113.2 109 53.2
PSO541G4412 Papaver somniferum HOM05D003653 ORTHO05D004249 1.5e-23 113.2 121 52.9
TAR383G0849 Trochodendron aralioides HOM05D003653 ORTHO05D004249 5.8e-23 111.3 125 52.8
HPP92_012790 Vanilla planifolia HOM05D003653 ORTHO05D004249 9.9e-23 110.5 114 52.6
PSO724G1082 Papaver somniferum HOM05D003653 ORTHO05D004249 1.7e-22 109.8 111 54.1
PSO135G0095 Papaver somniferum HOM05D003653 ORTHO05D004249 3.8e-22 108.6 111 53.2
Aqoxy1G02116 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 3.2e-21 105.5 109 55.0
SEGI_20709 Sequoiadendron giganteum HOM05D003653 ORTHO05D004249 5.4e-21 104.8 119 49.6
Nitab4.5_0000055g0040 Nicotiana tabacum HOM05D003653 ORTHO05D004249 1.2e-20 103.6 98 62.2
Os08g0451000 Oryza sativa ssp. japonica HOM05D003653 ORTHO05D004249 1.0e-19 100.5 114 49.1
Sopen07g006330 Solanum pennellii HOM05D000004 ORTHO05D000002 1.3e-19 100.1 98 61.2
CDE08G1372 Ceratophyllum demersum HOM05D003653 ORTHO05D004249 5.1e-19 98.2 115 50.4
Lj4C921G8 Lonicera japonica HOM05D003653 ORTHO05D004249 6.7e-19 97.8 92 56.5
Mapoly0109s0022 Marchantia polymorpha HOM05D003653 ORTHO05D004249 9.6e-18 94.0 120 45.0
HanXRQChr11g0323951 Helianthus annuus HOM05D003653 ORTHO05D004249 2.8e-17 92.4 91 53.8
unitig_8.g3535 Utricularia gibba HOM05D003653 ORTHO05D004249 1.4e-16 90.1 110 47.3
VMungo1215G1873 Vigna mungo HOM05D003653 ORTHO05D004249 1.4e-16 90.1 90 55.6
Pp3c10_7010 Physcomitrium patens HOM05D003653 ORTHO05D004249 2.6e-15 85.9 109 44.0
ECA232G0158 Erigeron canadensis HOM05D003653 ORTHO05D004249 3.8e-14 82.0 90 50.0
Pp3c14_9870 Physcomitrium patens HOM05D003653 ORTHO05D004249 4.2e-13 78.6 123 41.5
arahy.Tifrunner.gnm1.ann1.LZJ3ZW Arachis hypogaea HOM05D003653 ORTHO05D004249 1.8e-11 73.2 110 41.8
SMO196G0011 Selaginella moellendorffii HOM05D003653 ORTHO05D004249 3.3e-10 68.9 103 39.8
CBR_g20391 Chara braunii HOM05D003653 ORTHO05D004249 4.3e-10 68.6 123 38.2
Haze_16164 Corylus avellana HOM05D003653 ORTHO05D004249 1.3e-06 57.0 90 41.1


User provided reference genes

Program Settings