Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G187700 Carya illinoinensis HOM05D005241 ORTHO05D005862 2.1e-199 698.7 330 100.0
Haze_22151 Corylus avellana HOM05D005241 ORTHO05D005862 2.3e-174 615.5 321 89.7
QL02p096102 Quercus lobata HOM05D005241 ORTHO05D005862 5.0e-169 597.8 321 86.3
Atru.chr7.554 Acer truncatum HOM05D005241 ORTHO05D005862 4.2e-168 594.7 324 84.6
RcHm_v2.0_Chr4g0404611 Rosa chinensis HOM05D005241 ORTHO05D005862 4.7e-167 591.3 330 80.6
FvH4_4g09810 Fragaria vesca HOM05D005241 ORTHO05D005862 4.0e-166 588.2 330 81.5
FAN12G0682 Fragaria x ananassa HOM05D005241 ORTHO05D005862 4.0e-166 588.2 330 81.5
Duzib150G1634 Durio zibethinus HOM05D005241 ORTHO05D005862 3.4e-165 585.1 326 82.8
FAN07G2217 Fragaria x ananassa HOM05D005241 ORTHO05D005862 3.4e-165 585.1 330 81.2
FAN17G0752 Fragaria x ananassa HOM05D005241 ORTHO05D005862 7.5e-165 583.9 330 80.9
Manes.06G028800 Manihot esculenta HOM05D005241 ORTHO05D005862 6.3e-164 580.9 322 83.2
Thecc.09G163500 Theobroma cacao HOM05D005241 ORTHO05D005862 5.4e-163 577.8 321 82.9
TWI34G1734 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 1.2e-162 576.6 320 81.9
Gohir.D06G047501 Gossypium hirsutum HOM05D005241 ORTHO05D005862 2.7e-162 575.5 316 83.2
Gohir.A06G047300 Gossypium hirsutum HOM05D005241 ORTHO05D005862 5.9e-162 574.3 316 83.2
Ciclev10008429m.g Citrus clementina HOM05D005241 ORTHO05D005862 7.7e-162 573.9 329 81.2
CsaV3_1G029530 Cucumis sativus L. HOM05D005241 ORTHO05D005862 7.7e-162 573.9 315 83.2
Gorai.010G053100 Gossypium raimondii HOM05D005241 ORTHO05D005862 1.3e-161 573.2 317 83.3
MD13G1261500 Malus domestica HOM05D005241 ORTHO05D005862 2.9e-161 572.0 323 81.1
TWI34G0564 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 2.9e-161 572.0 319 81.5
TAR629G1464 Trochodendron aralioides HOM05D005241 ORTHO05D005862 3.8e-161 571.6 316 83.9
Glyma.17G067600 Glycine max HOM05D005241 ORTHO05D005862 1.1e-160 570.1 324 81.8
Lalb_Chr07g0180171 Lupinus albus HOM05D005241 ORTHO05D005862 1.1e-160 570.1 315 83.5
Dinv41292 Davidia involucrata HOM05D005241 ORTHO05D005862 3.3e-160 568.5 314 83.8
COL.COLO4_16080 Corchorus olitorius HOM05D005241 ORTHO05D005862 7.2e-160 567.4 329 79.6
COL.COLO4_16078 Corchorus olitorius HOM05D005241 ORTHO05D005862 9.5e-160 567.0 314 83.8
Actinidia24021 Actinidia chinensis HOM05D005241 ORTHO05D005862 1.2e-159 566.6 321 80.4
Dinv42767 Davidia involucrata HOM05D005241 ORTHO05D005862 1.8e-158 562.8 324 81.5
Dinv43336 Davidia involucrata HOM05D005241 ORTHO05D005862 1.8e-158 562.8 324 81.5
Potri.018G097100 Populus trichocarpa HOM05D005241 ORTHO05D005862 1.8e-158 562.8 310 83.2
Sabra18G0084300 Salix brachista HOM05D005241 ORTHO05D005862 4.0e-158 561.6 321 80.1
SalBow6G2881 Salvia bowleyana HOM05D005241 ORTHO05D005862 6.8e-158 560.8 321 79.8
CANSAT11G2449 Cannabis sativa HOM05D005241 ORTHO05D005862 8.9e-158 560.5 324 79.3
Phvul.003G150000 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 2.0e-157 559.3 316 81.6
Oeu043521.1 Olea europaea HOM05D005241 ORTHO05D005862 2.6e-157 558.9 322 79.8
Thecc.09G163700 Theobroma cacao HOM05D005241 ORTHO05D005862 9.8e-157 557.0 325 79.7
ClCG06G012960 Citrullus lanatus HOM05D005241 ORTHO05D005862 1.7e-156 556.2 326 78.5
Nn7g37052 Nelumbo nucifera HOM05D005241 ORTHO05D005862 1.7e-156 556.2 313 82.4
CSS0029475 Camellia sinensis var. sinensis HOM05D005241 ORTHO05D005862 2.8e-156 555.4 312 81.7
Glyma.13G092800 Glycine max HOM05D005241 ORTHO05D005862 1.1e-155 553.5 323 78.9
SGA_v2.0_scaffold66G22503 Striga asiatica HOM05D005241 ORTHO05D005862 1.1e-155 553.5 314 80.9
Solyc12g014440.2 Solanum lycopersicum HOM05D005241 ORTHO05D005862 4.1e-155 551.6 324 77.8
Ca_21190_v3 Cicer arietinum L. HOM05D005241 ORTHO05D005862 5.4e-155 551.2 322 77.6
Sopen12g007320 Solanum pennellii HOM05D005241 ORTHO05D005862 5.4e-155 551.2 322 78.0
THA.LOC104813533 Tarenaya hassleriana HOM05D005241 ORTHO05D005862 7.0e-155 550.8 319 79.3
Gohir.A05G345818 Gossypium hirsutum HOM05D005241 ORTHO05D005862 1.2e-154 550.1 335 77.0
MBI18_g28946_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 1.2e-154 550.1 311 81.4
Lj4g0014860 Lotus japonicus HOM05D005241 ORTHO05D005862 2.0e-154 549.3 314 81.2
Medtr4g129180 Medicago truncatula HOM05D005241 ORTHO05D005862 2.7e-154 548.9 325 77.8
BolC3t13925H Brassica oleracea HOM05D005241 ORTHO05D005862 3.5e-154 548.5 309 80.6
Lalb_Chr07g0180161 Lupinus albus HOM05D005241 ORTHO05D005862 3.5e-154 548.5 323 77.7
SalBow6G2671 Salvia bowleyana HOM05D005241 ORTHO05D005862 5.9e-154 547.7 314 79.6
VMungo1215G3242 Vigna mungo HOM05D005241 ORTHO05D005862 5.9e-154 547.7 316 79.4
AL8G33730 Arabidopsis lyrata HOM05D005241 ORTHO05D005862 7.8e-154 547.4 309 81.6
MSTRG.19688 Avicennia marina HOM05D005241 ORTHO05D005862 1.0e-153 547.0 313 80.2
Lsat_1_v5_gn_8_65460 Lactuca sativa HOM05D005241 ORTHO05D005862 1.0e-153 547.0 311 80.4
TPR.G5349 Trifolium pratense HOM05D005241 ORTHO05D005862 1.0e-153 547.0 323 77.4
Lj9A730T54 Lonicera japonica HOM05D005241 ORTHO05D005862 1.3e-153 546.6 318 79.2
A03p12620 Brassica napus HOM05D005241 ORTHO05D005862 2.9e-153 545.4 309 80.6
Eucgr.C02440 Eucalyptus grandis HOM05D005241 ORTHO05D005862 3.9e-153 545.0 322 76.1
Psat4g010840 Pisum sativum HOM05D005241 ORTHO05D005862 3.9e-153 545.0 322 77.6
Thhalv10013983m.g Eutrema salsugineum HOM05D005241 ORTHO05D005862 5.0e-153 544.7 309 81.2
AT5G57700 Arabidopsis thaliana HOM05D005241 ORTHO05D005862 8.6e-153 543.9 309 80.6
CARHR271450 Cardamine hirsuta HOM05D005241 ORTHO05D005862 8.6e-153 543.9 308 80.5
PGR102G1178 Punica granatum HOM05D005241 ORTHO05D005862 8.6e-153 543.9 313 78.0
BraA03t10577Z Brassica rapa HOM05D005241 ORTHO05D005862 1.1e-152 543.5 309 80.6
Medtr4g129200 Medicago truncatula HOM05D005241 ORTHO05D005862 1.5e-152 543.1 324 78.1
Gorai.012G095700 Gossypium raimondii HOM05D005241 ORTHO05D005862 1.9e-152 542.7 329 77.8
Sp6g19390 Schrenkiella parvula HOM05D005241 ORTHO05D005862 2.5e-152 542.3 309 80.3
C03p14830 Brassica napus HOM05D005241 ORTHO05D005862 3.3e-152 542.0 309 79.9
HanXRQChr06g0178861 Helianthus annuus HOM05D005241 ORTHO05D005862 4.3e-152 541.6 311 79.7
arahy.Tifrunner.gnm1.ann1.RWXM46 Arachis hypogaea HOM05D005241 ORTHO05D005862 9.5e-152 540.4 317 77.6
vmacro13085 Vaccinium macrocarpon HOM05D005241 ORTHO05D005862 9.5e-152 540.4 323 75.9
Gohir.D04G085700 Gossypium hirsutum HOM05D005241 ORTHO05D005862 1.2e-151 540.0 329 77.2
DCAR_014714 Daucus carota HOM05D005241 ORTHO05D005862 2.8e-151 538.9 323 75.9
Glyma.13G092900 Glycine max HOM05D005241 ORTHO05D005862 1.8e-150 536.2 322 78.6
Psat4g010800 Pisum sativum HOM05D005241 ORTHO05D005862 4.0e-150 535.0 317 77.6
CDE10G0441 Ceratophyllum demersum HOM05D005241 ORTHO05D005862 6.8e-150 534.3 307 77.2
Phvul.003G150200 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 6.8e-150 534.3 323 75.9
Aa31LG3G13540 Aethionema arabicum HOM05D005241 ORTHO05D005862 8.9e-150 533.9 309 78.3
PSO135G0092 Papaver somniferum HOM05D005241 ORTHO05D005862 3.4e-149 531.9 310 77.4
Aqoxy4G03021 Aquilegia oxysepala HOM05D005241 ORTHO05D005862 4.4e-149 531.6 309 79.9
arahy.Tifrunner.gnm1.ann1.4YP8RP Arachis hypogaea HOM05D005241 ORTHO05D005862 7.5e-149 530.8 311 77.5
PSO384G1775 Papaver somniferum HOM05D005241 ORTHO05D005862 1.7e-148 529.6 310 77.7
ATR0796G313 Amborella trichopoda HOM05D005241 ORTHO05D005862 6.4e-148 527.7 310 77.1
ECA236G3445 Erigeron canadensis HOM05D005241 ORTHO05D005862 1.1e-147 526.9 310 78.1
PSO135G0726 Papaver somniferum HOM05D005241 ORTHO05D005862 2.7e-146 522.3 310 75.8
Rhsim01G0009500 Rhododendron simsii HOM05D005241 ORTHO05D005862 7.8e-146 520.8 315 76.2
PSO384G2580 Papaver somniferum HOM05D005241 ORTHO05D005862 5.0e-145 518.1 310 76.5
Hund09015 Selenicereus undatus HOM05D005241 ORTHO05D005862 1.1e-144 516.9 308 76.0
unitig_0.g567 Utricularia gibba HOM05D005241 ORTHO05D005862 1.1e-144 516.9 313 75.1
Lj4g0023001 Lotus japonicus HOM05D005241 ORTHO05D005862 2.5e-144 515.8 334 73.4
PSO135G0552 Papaver somniferum HOM05D005241 ORTHO05D005862 5.6e-144 514.6 310 75.8
Cc06_g13790 Coffea canephora HOM05D005241 ORTHO05D005862 9.5e-144 513.8 315 76.8
Os07g0516000 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 5.8e-141 504.6 309 74.4
HPP92_013485 Vanilla planifolia HOM05D005241 ORTHO05D005862 2.4e-139 499.2 311 74.0
SEGI_10163 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 1.6e-138 496.5 332 71.7
AUR62040288 Chenopodium quinoa HOM05D005241 ORTHO05D005862 1.1e-136 490.3 304 74.3
Peaxi162Scf00078g00547 Petunia axillaris HOM05D005241 ORTHO05D005862 5.6e-136 488.0 305 75.1
EL10Ac8g18255 Beta vulgaris HOM05D005241 ORTHO05D005862 4.7e-135 485.0 304 72.4
Os07g0516050 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 4.7e-135 485.0 311 70.1
FAN22G1361 Fragaria x ananassa HOM05D005241 ORTHO05D005862 3.5e-130 468.8 459 54.2
Nitab4.5_0000168g0090 Nicotiana tabacum HOM05D005241 ORTHO05D005862 1.3e-129 466.8 324 69.1
Nitab4.5_0006743g0030 Nicotiana tabacum HOM05D005241 ORTHO05D005862 4.3e-128 461.8 324 68.8
HPP92_026039 Vanilla planifolia HOM05D005241 ORTHO05D005862 1.2e-125 453.8 311 69.1
SMO351G0057 Selaginella moellendorffii HOM05D005241 ORTHO05D005862 3.8e-124 448.7 306 67.0
Sc08g0005390 Simmondsia chinensis HOM05D005241 ORTHO05D005862 1.4e-123 446.8 307 68.7
Peaxi162Scf00339g00098 Petunia axillaris HOM05D005241 ORTHO05D005862 5.4e-123 444.9 305 70.5
Sed0027242 Sechium edule HOM05D005241 ORTHO05D005862 1.7e-121 439.9 243 80.7
PGSC0003DMG400012851 Solanum tuberosum HOM05D005241 ORTHO05D005862 3.0e-121 439.1 314 66.6
Mapoly0080s0044 Marchantia polymorpha HOM05D005241 ORTHO05D005862 3.9e-121 438.7 310 64.8
Hma1.2p1_0921F.1_g236680 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 3.3e-120 435.6 343 63.0
Hma1.2p1_2604F.1_g325280 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 3.3e-120 435.6 343 63.0
EL10Ac8g18254 Beta vulgaris HOM05D005241 ORTHO05D005862 4.4e-117 425.2 309 61.5
AUR62039979 Chenopodium quinoa HOM05D005241 ORTHO05D005862 7.6e-117 424.5 302 62.3
Zm00001eb105960 Zea mays HOM05D005241 ORTHO05D005862 2.9e-116 422.5 271 70.1
Zm00001eb105910 Zea mays HOM05D005241 ORTHO05D005862 9.3e-115 417.5 284 66.2
Pp3c3_37310 Physcomitrium patens HOM05D005241 ORTHO05D005862 3.9e-113 412.1 302 62.9
Hund26388 Selenicereus undatus HOM05D005241 ORTHO05D005862 9.9e-109 397.5 311 58.5
Migut.J01437 Erythranthe guttata HOM05D005241 ORTHO05D005862 3.3e-104 382.5 212 84.0
MELO3C029512.2 Cucumis melo HOM05D005241 ORTHO05D005862 3.5e-98 362.5 251 69.7
Cpa.g.sc450.6 Carica papaya HOM05D005241 ORTHO05D005862 4.6e-98 362.1 201 81.6
Carub.0008s1821 Capsella rubella HOM05D005241 ORTHO05D005862 7.9e-98 361.3 198 81.3
SEGI_04095 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 6.5e-92 341.7 214 73.8
Prupe.1G095300 Prunus persica HOM05D005241 ORTHO05D005862 2.5e-88 329.7 175 84.0
TPR.G40451 Trifolium pratense HOM05D005241 ORTHO05D005862 2.4e-86 323.2 176 81.2
TPR.G5299 Trifolium pratense HOM05D005241 ORTHO05D005862 3.9e-81 305.8 186 75.3
EL10Ac9g22414 Beta vulgaris HOM05D005241 ORTHO05D005862 1.4e-78 297.4 302 48.0
Nitab4.5_0000692g0020 Nicotiana tabacum HOM05D005241 ORTHO05D005862 5.7e-72 275.4 316 50.0
MELO3C017513.2 Cucumis melo HOM05D005241 ORTHO05D005862 4.4e-48 196.1 111 76.6
EL10Ac7g17876 Beta vulgaris HOM05D005241 ORTHO05D005862 6.3e-47 192.2 208 45.2
MBI18_g46216_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 3.3e-43 179.9 99 84.8
Glyma.17G067650 Glycine max HOM05D005241 ORTHO05D005862 9.2e-38 161.8 87 81.6
Hund09002 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.8e-33 147.5 94 70.2
MBI18_g29570_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 6.6e-28 129.0 91 69.2
AagrBONN_evm.TU.Sc2ySwM_228.5641 Anthoceros agrestis HOM05D005241 ORTHO05D005862 1.1e-27 128.3 309 28.2
Nn8g41235 Nelumbo nucifera HOM05D005241 ORTHO05D005862 1.1e-27 128.3 78 71.8
FAN12G2859 Fragaria x ananassa HOM05D005241 ORTHO05D005862 4.7e-26 122.9 73 76.7
Sc08g0005370 Simmondsia chinensis HOM05D005241 ORTHO05D005862 4.7e-26 122.9 79 75.9
SHI03002 Sapria himalayana HOM05D005241 ORTHO05D005862 4.9e-23 112.8 318 28.9
Peaxi162Scf00014g00192 Petunia axillaris HOM05D005241 ORTHO05D005862 1.4e-17 94.7 62 75.8
CBR_g30152 Chara braunii HOM05D010403 ORTHO05D005862 1.4e-14 84.7 241 27.4
MBI19_g36862_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 9.6e-11 72.0 48 68.8
Peaxi162Scf00013g00004 Petunia axillaris HOM05D000090 ORTHO05D001322 2.8e-10 70.5 41 68.3
MBI18_g11928_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 3.6e-10 70.1 49 71.4
arahy.Tifrunner.gnm1.ann1.6LUE8P Arachis hypogaea HOM05D005241 ORTHO05D005862 3.1e-09 67.0 48 66.7
CBR_g30241 Chara braunii HOM05D005241 ORTHO05D005862 3.4e-08 63.5 135 30.4


User provided reference genes

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