Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G186500 Carya illinoinensis HOM05D004507 ORTHO05D004874 1.9e-102 375.9 200 100.0
CiPaw.08G040400 Carya illinoinensis HOM05D004507 ORTHO05D004874 2.6e-64 249.2 180 75.6
QL02p095594 Quercus lobata HOM05D004507 ORTHO05D004874 7.7e-64 247.7 192 74.0
Cfa013550 Carpinus fangiana HOM05D004507 ORTHO05D004874 1.9e-62 243.0 189 73.0
Haze_22171 Corylus avellana HOM05D004507 ORTHO05D004874 5.5e-62 241.5 189 70.9
Thecc.09G160500 Theobroma cacao HOM05D004507 ORTHO05D004874 4.0e-60 235.3 190 67.4
Duzib150G1659 Durio zibethinus HOM05D004507 ORTHO05D004874 7.0e-57 224.6 192 65.6
Potri.018G099100 Populus trichocarpa HOM05D004507 ORTHO05D004874 1.6e-56 223.4 189 64.0
Nn8g40236 Nelumbo nucifera HOM05D004507 ORTHO05D004874 5.9e-56 221.5 186 62.9
Duzib168G0769 Durio zibethinus HOM05D004507 ORTHO05D004874 1.0e-55 220.7 189 66.7
Duzib187G0534 Durio zibethinus HOM05D004507 ORTHO05D004874 3.8e-55 218.8 191 64.9
Potri.006G177000 Populus trichocarpa HOM05D004507 ORTHO05D004874 8.5e-55 217.6 190 62.6
Dinv42787 Davidia involucrata HOM05D004507 ORTHO05D004874 1.4e-52 210.3 192 64.1
Dinv43314 Davidia involucrata HOM05D004507 ORTHO05D004874 1.4e-52 210.3 192 64.1
Atru.chr7.491 Acer truncatum HOM05D004507 ORTHO05D004874 2.3e-52 209.5 193 58.0
Sabra18G0085600 Salix brachista HOM05D004507 ORTHO05D004874 5.2e-52 208.4 190 61.1
Hma1.2p1_0156F.1_g068730 Hydrangea macrophylla HOM05D004507 ORTHO05D004874 2.6e-51 206.1 189 64.0
Dinv41307 Davidia involucrata HOM05D004507 ORTHO05D004874 1.3e-50 203.8 192 64.1
TAR625G0362 Trochodendron aralioides HOM05D004507 ORTHO05D004874 8.3e-50 201.1 185 60.0
Sabra06G0135200 Salix brachista HOM05D004507 ORTHO05D004874 1.4e-49 200.3 191 60.2
Ciclev10009640m.g Citrus clementina HOM05D004507 ORTHO05D004874 1.8e-49 199.9 189 59.8
Gohir.D08G097200 Gossypium hirsutum HOM05D004507 ORTHO05D004874 5.4e-49 198.4 190 62.1
TAR383G0901 Trochodendron aralioides HOM05D004507 ORTHO05D004874 5.4e-49 198.4 189 58.7
Gorai.004G104000 Gossypium raimondii HOM05D004507 ORTHO05D004874 2.7e-48 196.1 190 61.6
TAR626G0275 Trochodendron aralioides HOM05D004507 ORTHO05D004874 1.0e-47 194.1 189 57.1
Peaxi162Scf00525g00089 Petunia axillaris HOM05D004507 ORTHO05D004874 2.3e-47 193.0 195 56.4
Rhsim01G0012400 Rhododendron simsii HOM05D004507 ORTHO05D004874 6.5e-47 191.4 179 60.3
Eucgr.C00212 Eucalyptus grandis HOM05D004507 ORTHO05D004874 1.1e-46 190.7 192 58.3
TAR636G1916 Trochodendron aralioides HOM05D004507 ORTHO05D004874 3.3e-46 189.1 189 58.2
Manes.14G147700 Manihot esculenta HOM05D004507 ORTHO05D004874 2.8e-45 186.0 189 56.6
Cpa.g.sc75.20 Carica papaya HOM05D004507 ORTHO05D004874 4.7e-45 185.3 194 58.2
COL.COLO4_24287 Corchorus olitorius HOM05D004507 ORTHO05D004874 4.7e-45 185.3 200 60.5
Nn2g12545 Nelumbo nucifera HOM05D004507 ORTHO05D004874 1.0e-44 184.1 177 59.9
Lsat_1_v5_gn_7_51920 Lactuca sativa HOM05D004507 ORTHO05D004874 2.3e-44 183.0 192 53.1
Lj4g0026981 Lotus japonicus HOM05D004507 ORTHO05D004874 2.3e-44 183.0 195 56.9
TWI34G1692 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 5.2e-44 181.8 191 58.6
ClCG06G012890 Citrullus lanatus HOM05D004507 ORTHO05D004874 8.9e-44 181.0 184 58.2
Nitab4.5_0002587g0090 Nicotiana tabacum HOM05D004507 ORTHO05D004874 8.9e-44 181.0 192 53.6
Lalb_Chr13g0300541 Lupinus albus HOM05D004507 ORTHO05D004874 2.6e-43 179.5 190 54.2
Nitab4.5_0001427g0130 Nicotiana tabacum HOM05D004507 ORTHO05D004874 2.6e-43 179.5 208 51.0
Oeu045661.2 Olea europaea HOM05D004507 ORTHO05D004874 1.3e-42 177.2 180 56.1
PGSC0003DMG400011171 Solanum tuberosum HOM05D004507 ORTHO05D004874 1.3e-42 177.2 187 54.0
VMungo1215G3417 Vigna mungo HOM05D004507 ORTHO05D004874 1.3e-42 177.2 189 52.4
Aqoxy7G03243 Aquilegia oxysepala HOM05D004507 ORTHO05D004874 1.7e-42 176.8 191 56.0
Sopen07g002400 Solanum pennellii HOM05D004507 ORTHO05D004874 1.7e-42 176.8 188 52.7
ECA240G1410 Erigeron canadensis HOM05D004507 ORTHO05D004874 3.7e-42 175.6 186 52.7
Lsat_1_v5_gn_5_87560 Lactuca sativa HOM05D004507 ORTHO05D004874 3.7e-42 175.6 189 50.3
Prupe.1G097600 Prunus persica HOM05D004507 ORTHO05D004874 3.1e-41 172.6 193 55.4
Lalb_Chr12g0199041 Lupinus albus HOM05D004507 ORTHO05D004874 4.1e-41 172.2 190 50.0
EL10Ac8g18870 Beta vulgaris HOM05D004507 ORTHO05D004874 1.2e-40 170.6 206 52.4
Lsat_1_v5_gn_8_64381 Lactuca sativa HOM05D004507 ORTHO05D004874 1.6e-40 170.2 192 49.5
HanXRQChr09g0245171 Helianthus annuus HOM05D004507 ORTHO05D004874 1.0e-39 167.5 164 56.7
PGR142G2563 Punica granatum HOM05D004507 ORTHO05D004874 1.3e-39 167.2 187 53.5
ECA234G3792 Erigeron canadensis HOM05D004507 ORTHO05D004874 2.9e-39 166.0 182 52.2
HanXRQChr10g0306471 Helianthus annuus HOM05D004507 ORTHO05D004874 2.9e-39 166.0 185 50.3
Glyma.17G068800 Glycine max HOM05D004507 ORTHO05D004874 3.8e-39 165.6 202 50.5
Glyma.13G091500 Glycine max HOM05D004507 ORTHO05D004874 5.0e-39 165.2 200 51.5
Phvul.003G151300 Phaseolus vulgaris HOM05D004507 ORTHO05D004874 6.6e-39 164.9 188 51.6
Sed0016542 Sechium edule HOM05D004507 ORTHO05D004874 1.5e-38 163.7 184 51.1
Nitab4.5_0007380g0020 Nicotiana tabacum HOM05D004507 ORTHO05D004874 4.3e-38 162.2 194 51.5
Sed0006958 Sechium edule HOM05D004507 ORTHO05D004874 9.5e-38 161.0 186 52.2
MELO3C010170.2 Cucumis melo HOM05D004507 ORTHO05D004874 3.6e-37 159.1 184 53.3
HanXRQChr03g0066301 Helianthus annuus HOM05D004507 ORTHO05D004874 8.9e-36 154.5 161 53.4
CsaV3_1G029460 Cucumis sativus L. HOM05D004507 ORTHO05D004874 1.5e-35 153.7 184 52.2
TWI32G0773 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 1.5e-35 153.7 191 50.3
Ca_21181_v3 Cicer arietinum L. HOM05D004507 ORTHO05D004874 2.0e-35 153.3 189 49.2
MD13G1260000 Malus domestica HOM05D004507 ORTHO05D004874 2.6e-35 152.9 176 55.7
Psat0s1742g0040 Pisum sativum HOM05D004507 ORTHO05D004874 4.4e-35 152.1 187 46.5
DCAR_017942 Daucus carota HOM05D004507 ORTHO05D004874 2.2e-34 149.8 196 46.4
PSO782G3560 Papaver somniferum HOM05D004507 ORTHO05D004874 2.2e-34 149.8 190 51.6
Gohir.A08G235500 Gossypium hirsutum HOM05D004507 ORTHO05D004874 4.9e-34 148.7 181 50.3
Migut.K00276 Erythranthe guttata HOM05D004507 ORTHO05D004874 1.4e-33 147.1 183 47.5
Gorai.004G273100 Gossypium raimondii HOM05D004507 ORTHO05D004874 1.4e-33 147.1 181 50.8
MD16G1262200 Malus domestica HOM05D004507 ORTHO05D004874 1.4e-33 147.1 169 59.2
Gohir.D08G255900 Gossypium hirsutum HOM05D004507 ORTHO05D004874 2.4e-33 146.4 181 50.8
TPR.G5348 Trifolium pratense HOM05D004507 ORTHO05D004874 2.4e-33 146.4 188 44.1
THA.LOC104803518 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 4.1e-33 145.6 190 49.5
MBI14_g08083_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 5.4e-33 145.2 161 53.4
MSTRG.6179 Avicennia marina HOM05D004507 ORTHO05D004874 7.8e-32 141.4 188 52.7
CSS0033256 Camellia sinensis var. sinensis HOM05D004507 ORTHO05D004874 7.8e-32 141.4 152 56.6
MBI15_g25682_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 1.3e-31 140.6 189 47.6
MSTRG.10721 Avicennia marina HOM05D004507 ORTHO05D004874 2.3e-31 139.8 181 48.1
AUR62039753 Chenopodium quinoa HOM05D004507 ORTHO05D004874 3.0e-31 139.4 163 50.3
MSTRG.19674 Avicennia marina HOM05D004507 ORTHO05D004874 8.6e-31 137.9 185 48.1
Medtr4g129560 Medicago truncatula HOM05D004507 ORTHO05D004874 1.5e-30 137.1 188 45.2
Oeu031854.1 Olea europaea HOM05D004507 ORTHO05D004874 1.9e-30 136.7 158 51.9
SGA_v2.0_scaffold66G22517 Striga asiatica HOM05D004507 ORTHO05D004874 2.5e-30 136.3 189 44.4
THA.LOC104819987 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 2.5e-30 136.3 192 47.9
SGA_v2.0_scaffold69G23313 Striga asiatica HOM05D004507 ORTHO05D004874 3.3e-30 136.0 193 47.2
Sp7g28290 Schrenkiella parvula HOM05D004507 ORTHO05D004874 9.5e-30 134.4 189 48.1
HanXRQChr12g0358031 Helianthus annuus HOM05D004507 ORTHO05D004874 2.8e-29 132.9 158 50.0
AUR62028409 Chenopodium quinoa HOM05D004507 ORTHO05D004874 1.1e-28 131.0 159 50.3
Thhalv10026358m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 1.8e-28 130.2 189 46.6
CsaV3_2G007890 Cucumis sativus L. HOM05D004507 ORTHO05D004874 2.3e-28 129.8 189 46.0
A01p07760 Brassica napus HOM05D004507 ORTHO05D004874 3.1e-28 129.4 189 46.0
C01p08650 Brassica napus HOM05D004507 ORTHO05D004874 3.1e-28 129.4 189 46.0
BraA01t00720Z Brassica rapa HOM05D004507 ORTHO05D004874 3.1e-28 129.4 189 46.0
Lalb_Chr07g0180071 Lupinus albus HOM05D004507 ORTHO05D004874 3.1e-28 129.4 193 43.0
BcaB03g12646 Brassica carinata HOM05D004507 ORTHO05D004874 4.0e-28 129.0 189 46.0
BcaB03g12647 Brassica carinata HOM05D004507 ORTHO05D004874 4.0e-28 129.0 189 46.0
BcaNung02991 Brassica carinata HOM05D004507 ORTHO05D004874 5.2e-28 128.6 189 45.0
arahy.Tifrunner.gnm1.ann1.RZ4SGF Arachis hypogaea HOM05D004507 ORTHO05D004874 6.8e-28 128.3 189 43.9
BcaC09g51830 Brassica carinata HOM05D004507 ORTHO05D004874 8.9e-28 127.9 189 46.0
BolC1t00847H Brassica oleracea HOM05D004507 ORTHO05D004874 8.9e-28 127.9 189 46.0
BcaC01g01152 Brassica carinata HOM05D004507 ORTHO05D004874 1.5e-27 127.1 189 45.5
A08p19250 Brassica napus HOM05D004507 ORTHO05D004874 1.5e-27 127.1 189 45.5
C03p88720 Brassica napus HOM05D004507 ORTHO05D004874 1.5e-27 127.1 189 45.5
BraA08t33886Z Brassica rapa HOM05D004507 ORTHO05D004874 1.5e-27 127.1 189 45.5
CARHR238310 Cardamine hirsuta HOM05D004507 ORTHO05D004874 1.5e-27 127.1 189 45.5
MELO3C004096.2 Cucumis melo HOM05D004507 ORTHO05D004874 1.5e-27 127.1 186 45.2
arahy.Tifrunner.gnm1.ann1.40EERC Arachis hypogaea HOM05D004507 ORTHO05D004874 2.0e-27 126.7 189 43.4
AT4G30410 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 4.4e-27 125.6 189 45.5
BolC3t21183H Brassica oleracea HOM05D004507 ORTHO05D004874 4.4e-27 125.6 189 45.5
AL7G21740 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 5.8e-27 125.2 189 45.5
Carub.0007s1019 Capsella rubella HOM05D004507 ORTHO05D004874 7.5e-27 124.8 190 45.8
ATR0580G302 Amborella trichopoda HOM05D004507 ORTHO05D004874 2.2e-26 123.2 181 42.0
THA.LOC104803927 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 3.7e-26 122.5 193 43.5
THA.LOC104817812 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 1.1e-25 120.9 193 41.5
Sed0015365 Sechium edule HOM05D004507 ORTHO05D004874 3.2e-25 119.4 179 45.8
AT5G57780 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 2.7e-24 116.3 185 43.2
Sed0016375 Sechium edule HOM05D004507 ORTHO05D004874 4.6e-24 115.5 184 42.4
CDE05G1486 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 5.0e-23 112.1 174 43.7
Aa31LG2G20120 Aethionema arabicum HOM05D004507 ORTHO05D004874 8.6e-23 111.3 195 42.6
CDE02G1288 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 8.6e-23 111.3 165 43.6
AL8G33810 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 1.1e-22 110.9 185 41.6
Sp6g19460 Schrenkiella parvula HOM05D004507 ORTHO05D004874 1.5e-22 110.5 185 43.2
Thhalv10014877m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 5.6e-22 108.6 185 41.6
GSVIVG01023743001 Vitis vinifera HOM05D004507 ORTHO05D004874 3.6e-21 105.9 78 69.2
CARHR271510 Cardamine hirsuta HOM05D004507 ORTHO05D004874 6.2e-21 105.1 186 41.9
Cc06_g14060 Coffea canephora HOM05D004507 ORTHO05D004874 6.2e-21 105.1 190 38.4
BcaB08g36143 Brassica carinata HOM05D004507 ORTHO05D004874 8.1e-21 104.8 185 41.1
Carub.0008s1829 Capsella rubella HOM05D004507 ORTHO05D004874 2.3e-20 103.2 182 40.7
BcaC04g19929 Brassica carinata HOM05D004507 ORTHO05D004874 1.3e-18 97.4 186 39.8
BolC9t57818H Brassica oleracea HOM05D004507 ORTHO05D004874 1.3e-18 97.4 186 39.8
C09p49660 Brassica napus HOM05D004507 ORTHO05D004874 2.2e-18 96.7 186 39.2
A10p15150 Brassica napus HOM05D004507 ORTHO05D004874 2.9e-18 96.3 186 39.2
BraA10t43598Z Brassica rapa HOM05D004507 ORTHO05D004874 2.9e-18 96.3 186 39.2
unitig_62.g23492 Utricularia gibba HOM05D004507 ORTHO05D004874 1.1e-17 94.4 185 40.0
SEGI_26334 Sequoiadendron giganteum HOM05D000047 ORTHO05D000044 7.1e-17 91.7 184 34.2
Zm00001eb412560 Zea mays HOM05D004507 ORTHO05D004874 7.1e-17 91.7 193 33.7
CANSAT11G0203 Cannabis sativa HOM05D004507 ORTHO05D004874 2.1e-16 90.1 192 36.5
SHI49167 Sapria himalayana HOM05D004507 ORTHO05D004874 3.5e-16 89.4 181 35.9
ClCG11G012600 Citrullus lanatus HOM05D004507 ORTHO05D004874 4.6e-16 89.0 147 40.1
Os02g0178700 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 1.9e-14 83.6 191 35.6
SalBow1G3357 Salvia bowleyana HOM05D004507 ORTHO05D004874 4.4e-11 72.4 75 52.0
Os02g0791300 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 3.8e-10 69.3 174 30.5
Solyc07g006310.1 Solanum lycopersicum HOM05D004507 ORTHO05D004874 1.4e-09 67.4 47 68.1
Zm00001eb389070 Zea mays HOM05D004507 ORTHO05D004874 1.4e-09 67.4 191 30.4
SEGI_39312 Sequoiadendron giganteum HOM05D004507 ORTHO05D004874 5.4e-09 65.5 187 29.9
Zm00001eb233860 Zea mays HOM05D004507 ORTHO05D004874 9.2e-09 64.7 57 49.1
unitig_37.g12687 Utricularia gibba HOM05D004507 ORTHO05D004874 1.2e-08 64.3 87 43.7
CDE02G3054 Ceratophyllum demersum HOM05D001966 ORTHO05D011119 6.0e-08 62.0 78 41.0
SEGI_00453 Sequoiadendron giganteum HOM05D001624 ORTHO05D001530 6.0e-08 62.0 185 28.1
Zm00001eb178020 Zea mays HOM05D004507 ORTHO05D004874 1.0e-07 61.2 184 25.5
BcaB01g04486 Brassica carinata HOM05D004507 ORTHO05D004874 3.9e-07 59.3 80 41.2
SEGI_03314 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 3.9e-07 59.3 187 29.9
SEGI_25117 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 5.1e-07 58.9 207 29.0
SEGI_14977 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 8.7e-07 58.2 193 28.0
TWI36G1602 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 8.7e-07 58.2 185 30.3
SEGI_10087 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 1.1e-06 57.8 181 32.0
TAR636G0814 Trochodendron aralioides HOM05D005211 ORTHO05D006148 1.1e-06 57.8 186 28.0
Zm00001eb192600 Zea mays HOM05D004507 ORTHO05D004874 1.1e-06 57.8 178 28.7
FAN22G0070 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.9e-06 57.0 186 31.7
CiPaw.13G055500 Carya illinoinensis HOM05D005211 ORTHO05D006148 2.5e-06 56.6 186 28.0
SEGI_00160 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 3.3e-06 56.2 203 27.1
SEGI_22868 Sequoiadendron giganteum HOM05D001624 ORTHO05D001530 3.3e-06 56.2 183 27.9
FvH4_2g17750 Fragaria vesca HOM05D005211 ORTHO05D006148 4.3e-06 55.8 190 28.4
FAN24G3081 Fragaria x ananassa HOM05D005211 ORTHO05D006148 4.3e-06 55.8 190 28.4
SEGI_30051 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 4.3e-06 55.8 176 30.7
FAN07G0144 Fragaria x ananassa HOM05D005211 ORTHO05D006148 5.6e-06 55.5 179 31.8


User provided reference genes

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