Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G181200 Carya illinoinensis HOM05D003923 ORTHO05D004553 1.2e-173 613.2 338 100.0
Haze_22250 Corylus avellana HOM05D003923 ORTHO05D004553 1.2e-125 453.8 345 79.4
Cfa013623 Carpinus fangiana HOM05D003923 ORTHO05D004553 4.5e-125 451.8 345 78.3
QL12p036407 Quercus lobata HOM05D003923 ORTHO05D004553 2.1e-122 443.0 352 74.1
CiPaw.08G044000 Carya illinoinensis HOM05D003923 ORTHO05D004553 3.6e-122 442.2 342 73.7
Gorai.009G238400 Gossypium raimondii HOM05D003923 ORTHO05D004553 1.2e-109 400.6 344 65.7
Thecc.08G109100 Theobroma cacao HOM05D003923 ORTHO05D004553 4.6e-109 398.7 347 70.6
Gohir.D05G230200 Gossypium hirsutum HOM05D003923 ORTHO05D004553 6.0e-109 398.3 343 65.3
Potri.002G094700 Populus trichocarpa HOM05D003923 ORTHO05D004553 3.9e-108 395.6 346 68.8
Gohir.A05G227800 Gossypium hirsutum HOM05D003923 ORTHO05D004553 6.6e-108 394.8 349 62.8
Duzib041G0577 Durio zibethinus HOM05D003923 ORTHO05D004553 1.9e-107 393.3 348 69.0
TWI56G0888 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 8.1e-106 387.9 354 66.1
Lalb_Chr08g0241981 Lupinus albus HOM05D003923 ORTHO05D004553 1.1e-105 387.5 355 60.6
Sabra05G0125400 Salix brachista HOM05D003923 ORTHO05D004553 2.3e-105 386.3 346 65.6
Manes.18G068600 Manihot esculenta HOM05D003923 ORTHO05D004553 5.2e-105 385.2 359 64.9
Potri.005G166400 Populus trichocarpa HOM05D003923 ORTHO05D004553 9.8e-104 380.9 345 65.8
Prupe.1G514400 Prunus persica HOM05D003923 ORTHO05D004553 1.3e-103 380.6 369 66.7
Duzib093G1759 Durio zibethinus HOM05D003923 ORTHO05D004553 3.7e-103 379.0 362 66.3
CSS0021337 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 1.6e-101 373.6 343 68.5
Phvul.009G029900 Phaseolus vulgaris HOM05D003923 ORTHO05D004553 1.6e-101 373.6 346 67.1
FvH4_5g37730 Fragaria vesca HOM05D003923 ORTHO05D004553 2.1e-101 373.2 355 61.7
FAN08G0462 Fragaria x ananassa HOM05D003923 ORTHO05D004553 2.7e-101 372.9 354 62.1
FAN18G1313 Fragaria x ananassa HOM05D003923 ORTHO05D004553 1.0e-100 370.9 355 60.8
FAN13G1718 Fragaria x ananassa HOM05D003923 ORTHO05D004553 1.7e-100 370.2 354 59.3
FAN04G1592 Fragaria x ananassa HOM05D003923 ORTHO05D004553 3.0e-100 369.4 354 61.9
Hma1.2p1_0120F.1_g057290 Hydrangea macrophylla HOM05D003923 ORTHO05D004553 8.6e-100 367.9 346 65.6
Nn5g29082 Nelumbo nucifera HOM05D003923 ORTHO05D004553 1.6e-98 363.6 341 61.6
Cpa.g.sc36.119 Carica papaya HOM05D003923 ORTHO05D004553 2.1e-98 363.2 348 61.8
Gohir.D06G037500 Gossypium hirsutum HOM05D003923 ORTHO05D004553 4.7e-98 362.1 344 61.3
MD15G1366500 Malus domestica HOM05D003923 ORTHO05D004553 6.2e-98 361.7 374 58.8
RcHm_v2.0_Chr7g0239471 Rosa chinensis HOM05D003923 ORTHO05D004553 6.2e-98 361.7 356 60.7
TWI12G0076 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 1.1e-97 360.9 359 62.1
Lj1g0006284 Lotus japonicus HOM05D003923 ORTHO05D004553 1.8e-97 360.1 358 62.6
MD08G1180900 Malus domestica HOM05D003923 ORTHO05D004553 3.1e-97 359.4 364 62.4
Ciclev10001646m.g Citrus clementina HOM05D003923 ORTHO05D004553 6.8e-97 358.2 358 62.8
Gorai.010G042400 Gossypium raimondii HOM05D003923 ORTHO05D004553 8.9e-97 357.8 344 60.5
Cc10_g07380 Coffea canephora HOM05D003923 ORTHO05D004553 7.6e-96 354.8 367 59.1
COL.COLO4_16427 Corchorus olitorius HOM05D003923 ORTHO05D004553 1.4e-94 350.5 337 60.5
CSS0001866 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 3.2e-94 349.4 350 60.9
TAR628G1119 Trochodendron aralioides HOM05D003923 ORTHO05D004553 1.3e-92 344.0 340 62.9
Gohir.A06G036700 Gossypium hirsutum HOM05D003923 ORTHO05D004553 2.3e-92 343.2 344 57.0
Glyma.06G104700 Glycine max HOM05D003923 ORTHO05D004553 3.0e-92 342.8 359 63.5
Medtr3g074210 Medicago truncatula HOM05D003923 ORTHO05D004553 3.0e-92 342.8 360 56.4
Eucgr.F02437 Eucalyptus grandis HOM05D003923 ORTHO05D004553 1.1e-91 340.9 349 56.7
Lalb_Chr11g0065491 Lupinus albus HOM05D003923 ORTHO05D004553 1.1e-91 340.9 360 59.7
Oeu061492.1 Olea europaea HOM05D003923 ORTHO05D004553 5.6e-91 338.6 356 57.9
CANSAT25G0676 Cannabis sativa HOM05D003923 ORTHO05D004553 1.2e-90 337.4 355 62.8
Oeu024542.1 Olea europaea HOM05D003923 ORTHO05D004553 6.2e-90 335.1 342 57.3
TPR.G35206 Trifolium pratense HOM05D003923 ORTHO05D004553 8.9e-89 331.3 356 59.3
Peaxi162Scf00041g01015 Petunia axillaris HOM05D003923 ORTHO05D004553 1.5e-88 330.5 357 57.4
Psat5g138360 Pisum sativum HOM05D003923 ORTHO05D004553 3.4e-88 329.3 362 55.5
Sabra02G0074700 Salix brachista HOM05D003923 ORTHO05D004553 4.2e-86 322.4 349 56.7
Rhsim06G0083500 Rhododendron simsii HOM05D003923 ORTHO05D004553 9.3e-86 321.2 362 55.5
Manes.02G153800 Manihot esculenta HOM05D003923 ORTHO05D004553 7.8e-85 318.2 346 61.3
Eucgr.F00301 Eucalyptus grandis HOM05D003923 ORTHO05D004553 1.9e-83 313.5 265 64.2
MSTRG.24466 Avicennia marina HOM05D003923 ORTHO05D004553 4.8e-82 308.9 358 55.6
Duzib116G0286 Durio zibethinus HOM05D003923 ORTHO05D004553 6.2e-82 308.5 275 62.5
Ca_15243_v3 Cicer arietinum L. HOM05D003923 ORTHO05D004553 5.3e-81 305.4 364 58.8
VMungo1309G2192 Vigna mungo HOM05D003923 ORTHO05D004553 7.1e-78 295.0 351 57.5
EL10Ac1g01249 Beta vulgaris HOM05D003923 ORTHO05D004553 2.7e-77 293.1 357 47.9
MELO3C010430.2 Cucumis melo HOM05D003923 ORTHO05D004553 2.7e-77 293.1 335 52.5
Glyma.04G103500 Glycine max HOM05D003923 ORTHO05D004553 7.9e-77 291.6 337 52.2
ClCG11G015440 Citrullus lanatus HOM05D003923 ORTHO05D004553 8.7e-76 288.1 350 51.4
THA.LOC104809709 Tarenaya hassleriana HOM05D003923 ORTHO05D004553 4.3e-75 285.8 371 51.5
Aqoxy5G01999 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 1.6e-74 283.9 353 46.7
Actinidia30763 Actinidia chinensis HOM05D003923 ORTHO05D004553 2.1e-74 283.5 338 50.3
CsaV3_4G028650 Cucumis sativus L. HOM05D003923 ORTHO05D004553 2.1e-74 283.5 337 54.9
HanXRQChr15g0491381 Helianthus annuus HOM05D003923 ORTHO05D004553 3.7e-74 282.7 354 50.6
PSO447G0218 Papaver somniferum HOM05D003923 ORTHO05D004553 1.4e-73 280.8 368 50.3
PSO210G6507 Papaver somniferum HOM05D003923 ORTHO05D004553 2.4e-73 280.0 368 50.5
Sc23g0000110 Simmondsia chinensis HOM05D003923 ORTHO05D004553 6.9e-73 278.5 342 50.0
vmacro21241 Vaccinium macrocarpon HOM05D003923 ORTHO05D004553 2.0e-72 276.9 354 53.1
CAN.G1261.5 Capsicum annuum HOM05D003923 ORTHO05D004553 3.4e-72 276.2 351 50.7
PGR042G1650 Punica granatum HOM05D003923 ORTHO05D004553 7.6e-72 275.0 345 49.3
MBI02_g08739_MAGBIO Magnolia biondii HOM05D003923 ORTHO05D004553 1.3e-71 274.2 349 51.0
BcaC08g47387 Brassica carinata HOM05D003923 ORTHO05D004553 1.1e-70 271.2 341 49.3
C06p52080 Brassica napus HOM05D003923 ORTHO05D004553 1.1e-70 271.2 341 49.3
BolC6t40231H Brassica oleracea HOM05D003923 ORTHO05D004553 1.1e-70 271.2 341 49.3
ECA232G2894 Erigeron canadensis HOM05D003923 ORTHO05D004553 1.4e-70 270.8 357 49.6
BcaB03g15981 Brassica carinata HOM05D003923 ORTHO05D004553 1.9e-70 270.4 334 50.6
Peaxi162Scf00160g00147 Petunia axillaris HOM05D003923 ORTHO05D004553 3.2e-70 269.6 345 50.1
Lsat_1_v5_gn_9_43840 Lactuca sativa HOM05D003923 ORTHO05D004553 5.5e-70 268.9 341 49.9
ECA246G1087 Erigeron canadensis HOM05D003923 ORTHO05D004553 2.7e-69 266.5 346 46.8
Lalb_Chr17g0344141 Lupinus albus HOM05D003923 ORTHO05D004553 2.7e-69 266.5 342 54.7
PGSC0003DMG400008539 Solanum tuberosum HOM05D003923 ORTHO05D004553 2.7e-69 266.5 344 48.8
Solyc12g056990.1 Solanum lycopersicum HOM05D003923 ORTHO05D004553 1.0e-68 264.6 342 48.5
Nitab4.5_0000421g0080 Nicotiana tabacum HOM05D003923 ORTHO05D004553 5.1e-68 262.3 346 47.7
Aa31LG4G8160 Aethionema arabicum HOM05D003923 ORTHO05D004553 1.3e-66 257.7 343 49.0
Nitab4.5_0000675g0060 Nicotiana tabacum HOM05D003923 ORTHO05D004553 3.7e-66 256.1 343 49.6
Sopen04g029130 Solanum pennellii HOM05D003923 ORTHO05D004553 8.2e-66 255.0 355 48.7
PGSC0003DMG400009479 Solanum tuberosum HOM05D003923 ORTHO05D004553 2.4e-65 253.4 355 50.1
BcaB05g25102 Brassica carinata HOM05D003923 ORTHO05D004553 4.5e-64 249.2 347 45.8
Nitab4.5_0002243g0010 Nicotiana tabacum HOM05D003923 ORTHO05D004553 5.8e-64 248.8 289 50.5
Lalb_Chr04g0253191 Lupinus albus HOM05D003923 ORTHO05D004553 2.2e-63 246.9 328 49.7
Atru.chr13.1213 Acer truncatum HOM05D003923 ORTHO05D004553 3.8e-63 246.1 289 53.3
MSTRG.22149 Avicennia marina HOM05D003923 ORTHO05D004553 1.9e-62 243.8 350 46.3
CARHR071570 Cardamine hirsuta HOM05D003923 ORTHO05D004553 2.5e-62 243.4 356 47.2
Sed0005628 Sechium edule HOM05D003923 ORTHO05D004553 5.5e-62 242.3 352 45.2
Ah.05g170190 Amaranthus hybridus HOM05D003923 ORTHO05D004553 1.2e-61 241.1 355 45.1
AL2G38420 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 1.0e-60 238.0 344 48.8
AT1G78110 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 1.0e-60 238.0 343 53.4
Carub.0002s2500 Capsella rubella HOM05D003923 ORTHO05D004553 2.3e-60 236.9 348 49.4
Sp5g33250 Schrenkiella parvula HOM05D003923 ORTHO05D004553 2.3e-60 236.9 357 49.6
CsaV3_2G024220 Cucumis sativus L. HOM05D003923 ORTHO05D004553 8.7e-60 235.0 343 48.1
Nitab4.5_0001992g0040 Nicotiana tabacum HOM05D003923 ORTHO05D004553 2.5e-59 233.4 338 47.3
Migut.N02906 Erythranthe guttata HOM05D003923 ORTHO05D004553 2.1e-58 230.3 369 44.2
BraA07t31856Z Brassica rapa HOM05D003923 ORTHO05D004553 3.7e-58 229.6 341 44.3
A07p43360 Brassica napus HOM05D003923 ORTHO05D004553 4.8e-58 229.2 341 46.0
MELO3C011359.2 Cucumis melo HOM05D003923 ORTHO05D004553 1.8e-57 227.3 343 47.8
A02p22020 Brassica napus HOM05D003923 ORTHO05D004553 2.4e-57 226.9 339 42.8
BraA02t07205Z Brassica rapa HOM05D003923 ORTHO05D004553 4.1e-57 226.1 339 42.8
BraA09t39730Z Brassica rapa HOM05D003923 ORTHO05D004553 6.9e-57 225.3 338 43.2
Sp1g19740 Schrenkiella parvula HOM05D003923 ORTHO05D004553 1.5e-56 224.2 348 43.1
Solyc04g072940.4 Solanum lycopersicum HOM05D003923 ORTHO05D004553 1.5e-56 224.2 328 49.4
C02p35410 Brassica napus HOM05D003923 ORTHO05D004553 2.0e-56 223.8 339 43.1
AT1G22230 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 4.5e-56 222.6 351 47.6
Aqoxy6G00599 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 1.0e-55 221.5 342 43.6
Carub.0001s2178 Capsella rubella HOM05D003923 ORTHO05D004553 1.3e-55 221.1 353 45.3
BolC2t09553H Brassica oleracea HOM05D003923 ORTHO05D004553 1.7e-55 220.7 339 43.1
Sopen00g003260 Solanum pennellii HOM05D003923 ORTHO05D004553 1.7e-55 220.7 278 48.6
AL1G35680 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 2.2e-55 220.3 357 44.8
BcaB02g07147 Brassica carinata HOM05D003923 ORTHO05D004553 2.2e-55 220.3 341 43.7
Thhalv10018798m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 2.2e-55 220.3 363 46.3
BcaC03g15795 Brassica carinata HOM05D003923 ORTHO05D004553 2.9e-55 219.9 339 42.8
CARHR022580 Cardamine hirsuta HOM05D003923 ORTHO05D004553 2.9e-55 219.9 348 43.4
A09p42540 Brassica napus HOM05D003923 ORTHO05D004553 1.1e-54 218.0 338 42.9
ClCG08G011040 Citrullus lanatus HOM05D003923 ORTHO05D004553 2.5e-54 216.9 343 46.6
Dinv13027 Davidia involucrata HOM05D003923 ORTHO05D004553 7.2e-54 215.3 239 57.7
BcaC08g45438 Brassica carinata HOM05D003923 ORTHO05D004553 3.6e-53 213.0 370 48.1
A07p27700 Brassica napus HOM05D003923 ORTHO05D004553 3.6e-53 213.0 370 46.8
C06p30680 Brassica napus HOM05D003923 ORTHO05D004553 3.6e-53 213.0 370 48.1
BolC6t38232H Brassica oleracea HOM05D003923 ORTHO05D004553 3.6e-53 213.0 370 48.1
BraA07t30411Z Brassica rapa HOM05D003923 ORTHO05D004553 1.0e-52 211.5 370 43.8
BcaB07g32243 Brassica carinata HOM05D003923 ORTHO05D004553 1.8e-52 210.7 352 40.9
BcaC05g26150 Brassica carinata HOM05D003923 ORTHO05D004553 1.8e-52 210.7 352 40.9
C05p21350 Brassica napus HOM05D003923 ORTHO05D004553 1.8e-52 210.7 352 40.9
BcaB07g32245 Brassica carinata HOM05D003923 ORTHO05D004553 2.3e-52 210.3 335 43.6
HanXRQChr05g0162921 Helianthus annuus HOM05D003923 ORTHO05D004553 2.3e-52 210.3 369 43.4
BolC5t30833H Brassica oleracea HOM05D003923 ORTHO05D004553 8.7e-52 208.4 335 40.9
Sed0003612 Sechium edule HOM05D003923 ORTHO05D004553 4.3e-51 206.1 300 42.7
Migut.O00455 Erythranthe guttata HOM05D003923 ORTHO05D004553 5.7e-51 205.7 234 55.1
unitig_21.g20601 Utricularia gibba HOM05D003923 ORTHO05D004553 5.7e-51 205.7 349 46.4
AUR62027732 Chenopodium quinoa HOM05D003923 ORTHO05D004553 6.9e-49 198.7 192 54.2
ATR0564G364 Amborella trichopoda HOM05D003923 ORTHO05D004553 5.0e-47 192.6 348 37.9
Thhalv10008264m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 1.2e-45 188.0 342 38.0
A07p14630 Brassica napus HOM05D003923 ORTHO05D004553 3.3e-43 179.9 335 39.4
BraA07t29207Z Brassica rapa HOM05D003923 ORTHO05D004553 3.3e-43 179.9 335 39.1
Zm00001eb098670 Zea mays HOM05D003923 ORTHO05D004553 2.0e-40 170.6 371 35.3
unitig_744.g24093 Utricularia gibba HOM05D003923 ORTHO05D004553 5.0e-39 166.0 345 35.9
BcaC06g34942 Brassica carinata HOM05D003923 ORTHO05D004553 4.2e-38 162.9 335 36.4
PSO781G0128 Papaver somniferum HOM05D003923 ORTHO05D004553 4.2e-38 162.9 400 34.0
Aa31LG7G6170 Aethionema arabicum HOM05D003923 ORTHO05D004553 9.4e-38 161.8 341 36.4
SalBow7G0529 Salvia bowleyana HOM05D003923 ORTHO05D004553 1.6e-37 161.0 316 41.1
Sed0022190 Sechium edule HOM05D003923 ORTHO05D004553 6.1e-37 159.1 259 43.6
Zm00001eb255200 Zea mays HOM05D003923 ORTHO05D004553 8.0e-37 158.7 348 37.1
Zm00001eb311240 Zea mays HOM05D003923 ORTHO05D004553 8.0e-37 158.7 350 40.6
PSO541G2428 Papaver somniferum HOM05D003923 ORTHO05D004553 3.9e-36 156.4 423 32.6
CDE12G0356 Ceratophyllum demersum HOM05D003923 ORTHO05D004553 1.5e-35 154.5 331 39.0
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 2.0e-35 154.1 329 33.7
Zm00001eb194180 Zea mays HOM05D003923 ORTHO05D004553 9.7e-35 151.8 343 36.4
C07p21520 Brassica napus HOM05D003923 ORTHO05D004553 2.2e-34 150.6 335 34.9
ATR0122G028 Amborella trichopoda HOM05D003923 ORTHO05D004553 5.9e-32 142.5 330 33.6
GSVIVG01009013001 Vitis vinifera HOM05D003923 ORTHO05D004553 5.7e-27 125.9 199 42.7
HPP92_002331 Vanilla planifolia HOM05D003923 ORTHO05D004553 1.0e-23 115.2 337 31.5
Os02g0753400 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 5.0e-23 112.8 349 33.8
BolC7t42678H Brassica oleracea HOM05D003923 ORTHO05D004553 8.0e-21 105.5 173 40.5
Os09g0370000 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 1.3e-18 98.2 359 35.9
ATR0153G027 Amborella trichopoda HOM05D003923 ORTHO05D004553 5.0e-15 86.3 166 35.5
A07p43420 Brassica napus HOM05D003923 ORTHO05D004553 1.9e-14 84.3 103 54.4
Actinidia27197 Actinidia chinensis HOM05D003923 ORTHO05D004553 3.0e-12 77.0 81 49.4
unitig_578.g16204 Utricularia gibba HOM05D003923 ORTHO05D004553 3.4e-11 73.6 187 32.1
BcaB03g11901 Brassica carinata HOM05D003923 ORTHO05D004553 4.4e-11 73.2 96 46.9
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 6.3e-10 69.3 304 25.0
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 2.4e-09 67.4 308 24.7
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 2.4e-09 67.4 303 24.1
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 4.1e-09 66.6 312 23.7
BcaC07g38451 Brassica carinata HOM05D003923 ORTHO05D004553 2.0e-08 64.3 57 59.6
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 2.0e-08 64.3 279 24.7
Lalb_Chr20g0109451 Lupinus albus HOM05D004118 ORTHO05D004686 2.7e-08 63.9 294 26.2
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 5.9e-08 62.8 315 23.2
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 1.7e-07 61.2 284 24.6
Gohir.D13G152264 Gossypium hirsutum HOM05D004118 ORTHO05D004686 6.6e-07 59.3 313 22.7
BolC8t49783H Brassica oleracea HOM05D003923 ORTHO05D004553 8.6e-07 58.9 104 35.6
CiPaw.12G116800 Carya illinoinensis HOM05D004118 ORTHO05D004686 1.5e-06 58.2 312 24.7
Gorai.002G066200 Gossypium raimondii HOM05D004118 ORTHO05D004686 1.5e-06 58.2 314 22.9
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 2.5e-06 57.4 317 22.4
HanXRQChr15g0494281 Helianthus annuus HOM05D004118 ORTHO05D004686 4.3e-06 56.6 205 26.8
Duzib170G0047 Durio zibethinus HOM05D004118 ORTHO05D004686 7.3e-06 55.8 310 23.2
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 7.3e-06 55.8 288 22.6


User provided reference genes

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