Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G172200 Carya illinoinensis HOM05D006874 ORTHO05D008334 1.3e-160 569.7 291 100.0
Cfa013741 Carpinus fangiana HOM05D006874 ORTHO05D008334 4.0e-77 292.4 379 48.3
QL12p038579 Quercus lobata HOM05D006874 ORTHO05D008334 5.0e-72 275.4 384 45.3
Haze_22393 Corylus avellana HOM05D006874 ORTHO05D008334 7.8e-65 251.5 370 44.9
Haze_22401 Corylus avellana HOM05D006874 ORTHO05D008334 7.8e-65 251.5 370 44.9
Dinv39206 Davidia involucrata HOM05D006874 ORTHO05D008334 1.7e-48 197.2 369 39.0
TAR628G0654 Trochodendron aralioides HOM05D006874 ORTHO05D008334 1.7e-48 197.2 387 38.0
RcHm_v2.0_Chr6g0309981 Rosa chinensis HOM05D006874 ORTHO05D008334 8.1e-46 188.3 359 37.9
Actinidia19297 Actinidia chinensis HOM05D006874 ORTHO05D008334 8.9e-45 184.9 351 38.7
Manes.05G183400 Manihot esculenta HOM05D006874 ORTHO05D008334 8.9e-45 184.9 370 36.2
Actinidia10219 Actinidia chinensis HOM05D006874 ORTHO05D008334 4.9e-43 179.1 321 41.1
Thecc.08G084900 Theobroma cacao HOM05D006874 ORTHO05D008334 2.1e-41 173.7 360 36.4
FAN27G0759 Fragaria x ananassa HOM05D006874 ORTHO05D008334 3.5e-41 172.9 366 36.9
Manes.18G049200 Manihot esculenta HOM05D006874 ORTHO05D008334 1.7e-40 170.6 377 34.0
FAN15G0895 Fragaria x ananassa HOM05D006874 ORTHO05D008334 5.1e-40 169.1 366 36.3
Duzib093G1642 Durio zibethinus HOM05D006874 ORTHO05D008334 3.3e-39 166.4 366 35.5
TWI56G0226 Tripterygium wilfordii HOM05D006874 ORTHO05D008334 1.2e-38 164.5 370 34.9
Duzib116G0206 Durio zibethinus HOM05D006874 ORTHO05D008334 2.8e-38 163.3 363 36.1
Ciclev10016010m.g Citrus clementina HOM05D006874 ORTHO05D008334 8.1e-38 161.8 332 38.9
FvH4_2g32690 Fragaria vesca HOM05D006874 ORTHO05D008334 2.6e-36 156.8 367 35.7
FAN20G1691 Fragaria x ananassa HOM05D006874 ORTHO05D008334 2.2e-35 153.7 352 35.2
Nn6g34522 Nelumbo nucifera HOM05D006874 ORTHO05D008334 2.2e-35 153.7 390 33.3
Eucgr.F02227 Eucalyptus grandis HOM05D006874 ORTHO05D008334 2.4e-34 150.2 375 31.5
Sabra14G0008000 Salix brachista HOM05D006874 ORTHO05D008334 2.3e-32 143.7 373 32.4
Oeu053642.1 Olea europaea HOM05D006874 ORTHO05D008334 3.9e-32 142.9 340 32.1
Potri.014G013200 Populus trichocarpa HOM05D006874 ORTHO05D008334 6.6e-32 142.1 376 31.4
Potri.002G115600 Populus trichocarpa HOM05D006874 ORTHO05D008334 1.9e-31 140.6 372 32.0
Cc10_g07600 Coffea canephora HOM05D006874 ORTHO05D008334 2.5e-31 140.2 347 31.4
Nitab4.5_0002796g0010 Nicotiana tabacum HOM05D006874 ORTHO05D008334 2.5e-31 140.2 328 34.5
Nn5g30659 Nelumbo nucifera HOM05D006874 ORTHO05D008334 3.3e-31 139.8 384 32.0
Prupe.1G419500 Prunus persica HOM05D006874 ORTHO05D008334 5.6e-31 139.0 364 33.5
Nitab4.5_0001426g0040 Nicotiana tabacum HOM05D006874 ORTHO05D008334 7.3e-31 138.7 321 36.4
CANSAT25G0531 Cannabis sativa HOM05D006874 ORTHO05D008334 9.0e-29 131.7 375 32.3
TAR376G0413 Trochodendron aralioides HOM05D006874 ORTHO05D008334 3.4e-28 129.8 169 50.9
Sabra02G0091300 Salix brachista HOM05D006874 ORTHO05D008334 2.2e-27 127.1 315 34.9
Lalb_Chr23g0267621 Lupinus albus HOM05D006874 ORTHO05D008334 3.8e-27 126.3 371 31.3
SalBow7G3254 Salvia bowleyana HOM05D006874 ORTHO05D008334 1.4e-26 124.4 308 33.8
Gohir.D05G215200 Gossypium hirsutum HOM05D006874 ORTHO05D008334 2.4e-26 123.6 354 31.4
Atru.chr13.867 Acer truncatum HOM05D006874 ORTHO05D008334 1.6e-25 120.9 303 36.0
Cpa.g.sc524.2 Carica papaya HOM05D006874 ORTHO05D008334 1.6e-25 120.9 330 31.8
Rhsim06G0064400 Rhododendron simsii HOM05D006874 ORTHO05D008334 1.6e-25 120.9 357 33.1
Gohir.A05G211900 Gossypium hirsutum HOM05D006874 ORTHO05D008334 1.3e-24 117.9 356 31.2
MBI16_g45151_MAGBIO Magnolia biondii HOM05D006874 ORTHO05D008334 1.3e-24 117.9 353 30.9
PGSC0003DMG400004918 Solanum tuberosum HOM05D006874 ORTHO05D008334 6.6e-24 115.5 324 30.6
Gorai.009G221900 Gossypium raimondii HOM05D006874 ORTHO05D008334 8.7e-24 115.2 364 30.8
MSTRG.24387 Avicennia marina HOM05D006874 ORTHO05D008334 1.5e-23 114.4 346 32.1
Dinv09539 Davidia involucrata HOM05D006874 ORTHO05D008334 2.5e-23 113.6 337 32.0
vmacro21419 Vaccinium macrocarpon HOM05D006874 ORTHO05D008334 9.6e-23 111.7 356 30.9
MD08G1078600 Malus domestica HOM05D006874 ORTHO05D008334 1.3e-22 111.3 395 31.1
Solyc04g077535.1 Solanum lycopersicum HOM05D006874 ORTHO05D008334 1.3e-22 111.3 339 28.9
Psat0s1031g0080 Pisum sativum HOM05D006874 ORTHO05D008334 8.1e-22 108.6 351 32.8
Migut.C00474 Erythranthe guttata HOM05D006874 ORTHO05D008334 3.1e-21 106.7 331 31.1
Aqoxy6G02484 Aquilegia oxysepala HOM05D006874 ORTHO05D008334 5.3e-21 105.9 394 30.2
AUR62035010 Chenopodium quinoa HOM05D006874 ORTHO05D008334 1.5e-20 104.4 362 28.2
Ca_15889_v3 Cicer arietinum L. HOM05D006874 ORTHO05D008334 1.5e-20 104.4 353 29.5
Gohir.A06G025400 Gossypium hirsutum HOM05D006874 ORTHO05D008334 1.5e-20 104.4 325 30.2
Medtr3g103400 Medicago truncatula HOM05D006874 ORTHO05D008334 1.5e-20 104.4 367 30.0
Psat5g037000 Pisum sativum HOM05D006874 ORTHO05D008334 2.0e-20 104.0 355 31.0
Gorai.010G027100 Gossypium raimondii HOM05D006874 ORTHO05D008334 3.4e-20 103.2 321 30.5
Gohir.D06G022500 Gossypium hirsutum HOM05D006874 ORTHO05D008334 4.5e-20 102.8 321 30.2
PSO541G5864 Papaver somniferum HOM05D006874 ORTHO05D008334 2.9e-19 100.1 385 29.1
Sc15g0005390 Simmondsia chinensis HOM05D006874 ORTHO05D008334 3.8e-19 99.8 351 28.8
Hund05278 Selenicereus undatus HOM05D006874 ORTHO05D008334 6.4e-19 99.0 364 29.1
Glyma.14G089075 Glycine max HOM05D006874 ORTHO05D008334 1.9e-18 97.4 373 27.6
DCAR_020062 Daucus carota HOM05D006874 ORTHO05D008334 2.4e-18 97.1 302 28.1
FAN24G0724 Fragaria x ananassa HOM05D006874 ORTHO05D008334 4.2e-18 96.3 107 48.6
AUR62037457 Chenopodium quinoa HOM05D006874 ORTHO05D008334 5.4e-18 95.9 354 26.6
Glyma.17G233100 Glycine max HOM05D006874 ORTHO05D008334 5.4e-18 95.9 366 27.9
PGR031G0049 Punica granatum HOM05D006874 ORTHO05D008334 9.3e-18 95.1 377 25.5
Glyma.06G048600 Glycine max HOM05D006874 ORTHO05D008334 1.2e-17 94.7 390 30.3
CSS0036555 Camellia sinensis var. sinensis HOM05D006874 ORTHO05D008334 1.6e-17 94.4 111 46.8
Phvul.001G029700 Phaseolus vulgaris HOM05D006874 ORTHO05D008334 1.6e-17 94.4 358 29.1
TAR625G1551 Trochodendron aralioides HOM05D006874 ORTHO05D008334 2.7e-17 93.6 126 42.9
Dinv16069 Davidia involucrata HOM05D006874 ORTHO05D008334 3.5e-17 93.2 303 30.4
PSO675G5853 Papaver somniferum HOM05D006874 ORTHO05D008334 4.6e-17 92.8 387 28.7
MBI16_g41242_MAGBIO Magnolia biondii HOM05D006874 ORTHO05D008334 7.9e-17 92.0 132 43.9
Manes.07G056800 Manihot esculenta HOM05D006874 ORTHO05D008334 2.3e-16 90.5 109 44.0
MD15G1065400 Malus domestica HOM05D006874 ORTHO05D008334 3.9e-16 89.7 102 47.1
Psat6g017400 Pisum sativum HOM05D006874 ORTHO05D008334 3.9e-16 89.7 315 29.8
Sabra16G0181500 Salix brachista HOM05D006874 ORTHO05D008334 5.1e-16 89.4 352 28.7
CiPaw.06G164000 Carya illinoinensis HOM05D006874 ORTHO05D008334 1.5e-15 87.8 109 45.0
Hma1.2p1_1170F.1_g263450 Hydrangea macrophylla HOM05D006874 ORTHO05D008334 2.5e-15 87.0 102 45.1
Lj1g0014879 Lotus japonicus HOM05D006874 ORTHO05D008334 3.3e-15 86.7 354 29.7
TPR.G13116 Trifolium pratense HOM05D006874 ORTHO05D008334 7.4e-15 85.5 343 30.3
CSS0047478 Camellia sinensis var. sinensis HOM05D006874 ORTHO05D008334 9.6e-15 85.1 98 42.9
Cfa004701 Carpinus fangiana HOM05D006874 ORTHO05D008334 9.6e-15 85.1 368 26.6
SGA_v2.0_scaffold14G07085 Striga asiatica HOM05D000285 ORTHO05D000241 1.6e-14 84.3 276 30.4
EL10Ac1g02352 Beta vulgaris HOM05D006874 ORTHO05D008334 2.1e-14 84.0 367 27.0
TAR625G0319 Trochodendron aralioides HOM05D006874 ORTHO05D008334 3.7e-14 83.2 95 53.7
Potri.001G290000 Populus trichocarpa HOM05D006874 ORTHO05D008334 6.2e-14 82.4 347 28.8
Medtr1g017530 Medicago truncatula HOM05D006874 ORTHO05D008334 1.1e-13 81.6 362 27.9
MSTRG.25026 Avicennia marina HOM05D006874 ORTHO05D008334 2.4e-13 80.5 144 35.4
Gohir.A01G123500 Gossypium hirsutum HOM05D006874 ORTHO05D008334 3.1e-13 80.1 294 30.3
VMungo1309G0435 Vigna mungo HOM05D006874 ORTHO05D008334 5.3e-13 79.3 380 28.4
Actinidia00356 Actinidia chinensis HOM05D006874 ORTHO05D008334 6.9e-13 79.0 97 45.4
COL.COLO4_28465 Corchorus olitorius HOM05D006874 ORTHO05D008334 9.0e-13 78.6 154 42.2
Gorai.002G136000 Gossypium raimondii HOM05D006874 ORTHO05D008334 2.0e-12 77.4 298 30.5
CSS0007120 Camellia sinensis var. sinensis HOM05D006874 ORTHO05D008334 5.8e-12 75.9 312 29.2
Haze_10303 Corylus avellana HOM05D006874 ORTHO05D008334 1.0e-11 75.1 354 24.6
Potri.009G085500 Populus trichocarpa HOM05D006874 ORTHO05D008334 1.3e-11 74.7 348 26.1
ATR0739G189 Amborella trichopoda HOM05D006874 ORTHO05D008334 8.4e-11 72.0 355 27.0
Phvul.009G073900 Phaseolus vulgaris HOM05D006874 ORTHO05D008334 8.4e-11 72.0 382 29.1
ClCG05G026570 Citrullus lanatus HOM05D006874 ORTHO05D008334 3.2e-10 70.1 347 26.5
CsaV3_4G035240 Cucumis sativus L. HOM05D006874 ORTHO05D008334 3.2e-10 70.1 363 27.5
RhsimUnG0041100 Rhododendron simsii HOM05D063883 ORTHO05D008334 2.1e-09 67.4 311 28.3
RhsimUnG0123100 Rhododendron simsii HOM05D063883 ORTHO05D008334 2.1e-09 67.4 311 28.3
Migut.O00023 Erythranthe guttata HOM05D006874 ORTHO05D008334 2.7e-09 67.0 139 40.3
Sed0017147 Sechium edule HOM05D006874 ORTHO05D008334 2.7e-09 67.0 368 27.7
Lj5g0027457 Lotus japonicus HOM05D006874 ORTHO05D008334 3.5e-09 66.6 352 27.0
MELO3C016836.2 Cucumis melo HOM05D006874 ORTHO05D008334 1.0e-08 65.1 360 26.9
arahy.Tifrunner.gnm1.ann1.34G3CR Arachis hypogaea HOM05D032995 ORTHO05D031506 5.1e-08 62.8 297 26.9
arahy.Tifrunner.gnm1.ann1.E4Y0Z3 Arachis hypogaea HOM05D032995 ORTHO05D031506 5.1e-08 62.8 292 29.1
Sopen04g031160 Solanum pennellii HOM05D006874 ORTHO05D008334 6.7e-08 62.4 102 34.3
VMungo0647G0698 Vigna mungo HOM05D006874 ORTHO05D008334 8.7e-08 62.0 367 24.5
arahy.Tifrunner.gnm1.ann1.I6QTPS Arachis hypogaea HOM05D032995 ORTHO05D031506 1.1e-07 61.6 289 27.7
arahy.Tifrunner.gnm1.ann1.0IC8QA Arachis hypogaea HOM05D006874 ORTHO05D008334 4.3e-07 59.7 286 27.6
CDE02G2198 Ceratophyllum demersum HOM05D006874 ORTHO05D008334 4.3e-07 59.7 302 27.2
QL11p029345 Quercus lobata HOM05D006874 ORTHO05D008334 5.7e-07 59.3 359 22.8
Cpa.g.sc91.58 Carica papaya HOM05D016697 ORTHO05D018163 2.8e-06 57.0 102 29.4
Gohir.D01G111300 Gossypium hirsutum HOM05D006874 ORTHO05D008334 8.2e-06 55.5 298 26.8


User provided reference genes

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