Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G149800 Carya illinoinensis HOM05D005472 ORTHO05D005897 7.0e-193 677.2 355 100.0
CiPaw.08G066500 Carya illinoinensis HOM05D005472 ORTHO05D005897 1.3e-133 480.3 351 74.1
QL02p011634 Quercus lobata HOM05D005472 ORTHO05D005897 6.1e-112 408.3 354 66.4
Haze_22634 Corylus avellana HOM05D005472 ORTHO05D005897 3.9e-111 405.6 366 63.9
Cfa013951 Carpinus fangiana HOM05D005472 ORTHO05D005897 1.3e-101 374.0 316 66.1
Prupe.1G365300 Prunus persica HOM05D005472 ORTHO05D005897 1.8e-84 317.0 351 54.1
Sed0019370 Sechium edule HOM05D005472 ORTHO05D005897 1.4e-79 300.8 373 48.5
Duzib041G0268 Durio zibethinus HOM05D005472 ORTHO05D005897 3.0e-79 299.7 363 49.3
ClCG05G018260 Citrullus lanatus HOM05D005472 ORTHO05D005897 5.2e-79 298.9 371 46.4
TWI36G1185 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 2.0e-78 297.0 355 51.0
Thecc.08G044600 Theobroma cacao HOM05D005472 ORTHO05D005897 9.7e-78 294.7 352 49.4
GSVIVG01009906001 Vitis vinifera HOM05D005472 ORTHO05D005897 1.7e-77 293.9 380 48.4
Potri.005G239500 Populus trichocarpa HOM05D005472 ORTHO05D005897 4.8e-77 292.4 354 50.8
Sabra05G0185100 Salix brachista HOM05D005472 ORTHO05D005897 2.4e-76 290.0 354 50.3
Gohir.A05G257000 Gossypium hirsutum HOM05D005472 ORTHO05D005897 4.5e-75 285.8 363 48.5
Gorai.009G194600 Gossypium raimondii HOM05D005472 ORTHO05D005897 4.5e-75 285.8 358 47.2
COL.COLO4_26145 Corchorus olitorius HOM05D005472 ORTHO05D005897 5.9e-75 285.4 343 49.6
Gohir.D05G258500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 5.9e-75 285.4 360 48.3
Gorai.009G270000 Gossypium raimondii HOM05D005472 ORTHO05D005897 7.7e-75 285.0 360 48.3
TAR628G1150 Trochodendron aralioides HOM05D005472 ORTHO05D005897 6.5e-74 282.0 353 48.2
Potri.002G022200 Populus trichocarpa HOM05D005472 ORTHO05D005897 8.5e-74 281.6 354 48.0
MELO3C003750.2 Cucumis melo HOM05D005472 ORTHO05D005897 1.9e-73 280.4 358 46.1
ClCG08G014280 Citrullus lanatus HOM05D005472 ORTHO05D005897 3.2e-73 279.6 379 48.0
MELO3C011012.2 Cucumis melo HOM05D005472 ORTHO05D005897 7.2e-73 278.5 356 49.4
Gohir.A05G186500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 1.2e-72 277.7 359 46.8
CsaV3_2G029530 Cucumis sativus L. HOM05D005472 ORTHO05D005897 6.8e-71 271.9 356 48.9
TWI12G0454 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 8.8e-71 271.6 304 51.0
PGR031G2834 Punica granatum HOM05D005472 ORTHO05D005897 2.6e-70 270.0 362 46.1
Sabra02G0018300 Salix brachista HOM05D005472 ORTHO05D005897 5.7e-70 268.9 354 47.5
Eucgr.F00587 Eucalyptus grandis HOM05D005472 ORTHO05D005897 2.8e-69 266.5 364 44.8
Nn1g05892 Nelumbo nucifera HOM05D005472 ORTHO05D005897 1.1e-68 264.6 361 46.8
Lalb_Chr20g0120221 Lupinus albus HOM05D005472 ORTHO05D005897 7.0e-68 261.9 381 45.7
Atru.chr13.291 Acer truncatum HOM05D005472 ORTHO05D005897 9.1e-68 261.5 375 45.6
CsaV3_3G045880 Cucumis sativus L. HOM05D005472 ORTHO05D005897 9.1e-68 261.5 327 46.2
Duzib116G0175 Durio zibethinus HOM05D005472 ORTHO05D005897 1.0e-66 258.1 322 47.2
Manes.05G147400 Manihot esculenta HOM05D005472 ORTHO05D005897 1.7e-66 257.3 355 45.9
FAN27G2825 Fragaria x ananassa HOM05D005472 ORTHO05D005897 3.8e-66 256.1 366 43.4
Gohir.D05G189400 Gossypium hirsutum HOM05D005472 ORTHO05D005897 5.0e-66 255.8 324 46.6
FAN15G2782 Fragaria x ananassa HOM05D005472 ORTHO05D005897 6.6e-66 255.4 366 43.2
FvH4_2g38440 Fragaria vesca HOM05D005472 ORTHO05D005897 1.5e-65 254.2 366 43.7
Glyma.15G134600 Glycine max HOM05D005472 ORTHO05D005897 3.3e-65 253.1 368 44.3
Manes.18G013500 Manihot esculenta HOM05D005472 ORTHO05D005897 3.3e-65 253.1 345 47.0
Sed0011447 Sechium edule HOM05D005472 ORTHO05D005897 4.2e-65 252.7 357 44.5
RcHm_v2.0_Chr6g0302861 Rosa chinensis HOM05D005472 ORTHO05D005897 9.5e-65 251.5 366 44.0
Sopen04g035060 Solanum pennellii HOM05D005472 ORTHO05D005897 1.2e-64 251.1 362 43.4
THA.LOC104809508 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 6.1e-64 248.8 350 44.0
FAN20G3206 Fragaria x ananassa HOM05D005472 ORTHO05D005897 2.3e-63 246.9 366 42.3
Cc10_g01680 Coffea canephora HOM05D005472 ORTHO05D005897 3.0e-63 246.5 352 44.0
CANSAT25G0086 Cannabis sativa HOM05D005472 ORTHO05D005897 6.8e-63 245.4 354 45.2
Solyc04g081450.3 Solanum lycopersicum HOM05D005472 ORTHO05D005897 8.9e-63 245.0 362 42.5
THA.LOC104811410 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 2.6e-62 243.4 351 43.6
MD15G1012000 Malus domestica HOM05D005472 ORTHO05D005897 7.5e-62 241.9 351 43.0
TAR376G0796 Trochodendron aralioides HOM05D005472 ORTHO05D003948 2.2e-61 240.4 353 44.5
Glyma.09G028700 Glycine max HOM05D005472 ORTHO05D005897 2.8e-61 240.0 367 43.3
Peaxi162Scf00438g00827 Petunia axillaris HOM05D005472 ORTHO05D005897 2.8e-61 240.0 340 43.5
Dinv31847 Davidia involucrata HOM05D005472 ORTHO05D005897 2.4e-60 236.9 320 47.8
PGSC0003DMG400009864 Solanum tuberosum HOM05D005472 ORTHO05D005897 2.4e-60 236.9 362 41.4
CAN.G311.30 Capsicum annuum HOM05D005472 ORTHO05D005897 4.5e-59 232.6 353 43.6
PSO170G4377 Papaver somniferum HOM05D005472 ORTHO05D005897 8.6e-58 228.4 376 40.4
Ca_00891_v3 Cicer arietinum L. HOM05D005472 ORTHO05D005897 1.9e-57 227.3 403 39.2
Lj6g0021117 Lotus japonicus HOM05D005472 ORTHO05D005897 1.6e-56 224.2 371 41.5
PSO700G0202 Papaver somniferum HOM05D005472 ORTHO05D005897 2.1e-56 223.8 376 39.9
VMungo0540G2141 Vigna mungo HOM05D005472 ORTHO05D005897 1.0e-55 221.5 356 43.3
Nitab4.5_0002561g0030 Nicotiana tabacum HOM05D005472 ORTHO05D005897 5.2e-55 219.2 335 40.9
Ciclev10001635m.g Citrus clementina HOM05D005472 ORTHO05D005897 8.9e-55 218.4 392 40.6
Aa31LG7G4450 Aethionema arabicum HOM05D005472 ORTHO05D005897 1.5e-54 217.6 354 40.7
BraA07t29336Z Brassica rapa HOM05D005472 ORTHO05D005897 2.6e-54 216.9 351 40.2
Sp1g17770 Schrenkiella parvula HOM05D005472 ORTHO05D005897 1.3e-53 214.5 344 39.5
Psat1g164760 Pisum sativum HOM05D005472 ORTHO05D005897 2.4e-52 210.3 372 40.6
BcaB03g14419 Brassica carinata HOM05D005472 ORTHO05D005897 4.1e-52 209.5 355 39.4
Phvul.006G124300 Phaseolus vulgaris HOM05D005472 ORTHO05D005897 3.5e-51 206.5 360 40.8
CDE05G3315 Ceratophyllum demersum HOM05D005472 ORTHO05D005897 7.8e-51 205.3 364 38.7
AUR62033908 Chenopodium quinoa HOM05D005472 ORTHO05D005897 7.8e-51 205.3 310 41.9
AL1G32710 Arabidopsis lyrata HOM05D005472 ORTHO05D005897 1.0e-50 204.9 345 39.4
Cpa.g.sc26.42 Carica papaya HOM05D005472 ORTHO05D005897 2.3e-50 203.8 319 42.3
BolC7t42878H Brassica oleracea HOM05D005472 ORTHO05D005897 3.9e-50 203.0 341 39.0
CSS0003502 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 2.5e-49 200.3 354 38.1
Thhalv10008122m.g Eutrema salsugineum HOM05D005472 ORTHO05D005897 4.3e-49 199.5 343 38.8
Actinidia15422 Actinidia chinensis HOM05D005472 ORTHO05D005897 7.3e-49 198.7 354 40.1
CARHR020470 Cardamine hirsuta HOM05D005472 ORTHO05D005897 9.5e-49 198.4 344 40.1
Medtr2g031630 Medicago truncatula HOM05D005472 ORTHO05D005897 9.5e-49 198.4 357 38.9
TPR.G15190 Trifolium pratense HOM05D005472 ORTHO05D005897 1.2e-48 198.0 355 39.2
AT1G19980 Arabidopsis thaliana HOM05D005472 ORTHO05D005897 8.1e-48 195.3 345 38.8
BcaB03g14348 Brassica carinata HOM05D005472 ORTHO05D005897 6.8e-47 192.2 366 36.6
Hund05189 Selenicereus undatus HOM05D005472 ORTHO05D005897 2.0e-46 190.7 321 38.0
Lj4A797T57 Lonicera japonica HOM05D005472 ORTHO05D005897 2.6e-46 190.3 315 39.7
BraA08t34891Z Brassica rapa HOM05D005472 ORTHO05D005897 2.2e-45 187.2 339 36.0
Atru.chr2.2949 Acer truncatum HOM05D005472 ORTHO05D005897 3.7e-45 186.4 216 50.0
C07p23450 Brassica napus HOM05D005472 ORTHO05D005897 1.9e-44 184.1 366 36.9
EL10Ac1g02216 Beta vulgaris HOM05D005472 ORTHO05D005897 2.4e-44 183.7 325 38.5
Ah.00g000180 Amaranthus hybridus HOM05D005472 ORTHO05D005897 5.4e-44 182.6 268 39.2
CSS0003212 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 5.4e-44 182.6 330 37.0
A08p29540 Brassica napus HOM05D005472 ORTHO05D005897 1.2e-43 181.4 339 35.4
Carub.0001s1951 Capsella rubella HOM05D005472 ORTHO05D005897 1.2e-43 181.4 341 36.7
arahy.Tifrunner.gnm1.ann1.C4XWSY Arachis hypogaea HOM05D000672 ORTHO05D000522 1.3e-42 177.9 357 37.8
BcaB03g12884 Brassica carinata HOM05D005472 ORTHO05D005897 1.3e-42 177.9 341 35.5
AUR62041912 Chenopodium quinoa HOM05D005472 ORTHO05D005897 2.3e-42 177.2 362 35.9
vmacro07586 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 3.9e-42 176.4 352 36.6
MBI09_g31922_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 5.1e-42 176.0 299 38.8
SHI08069 Sapria himalayana HOM05D005472 ORTHO05D005897 6.6e-42 175.6 313 37.4
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 3.3e-41 173.3 276 39.9
Ah.11g039690 Amaranthus hybridus HOM05D005472 ORTHO05D005897 9.5e-41 171.8 278 37.1
arahy.Tifrunner.gnm1.ann1.MUE9LA Arachis hypogaea HOM05D000672 ORTHO05D000522 9.5e-41 171.8 356 37.6
HanXRQChr11g0322621 Helianthus annuus HOM05D005472 ORTHO05D005897 6.8e-39 165.6 336 33.3
BolC8t49626H Brassica oleracea HOM05D005472 ORTHO05D005897 2.6e-38 163.7 339 33.3
MSTRG.1192 Avicennia marina HOM05D005472 ORTHO05D005897 5.8e-38 162.5 377 33.4
Oeu007327.1 Olea europaea HOM05D005472 ORTHO05D005897 5.8e-38 162.5 358 35.2
vmacro21726 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 1.7e-37 161.0 352 34.9
Oeu054693.1 Olea europaea HOM05D005472 ORTHO05D005897 2.2e-37 160.6 291 39.2
BcaC07g39015 Brassica carinata HOM05D005472 ORTHO05D005897 2.9e-37 160.2 339 33.6
C08p19880 Brassica napus HOM05D005472 ORTHO05D005897 2.9e-37 160.2 339 33.3
HanXRQChr05g0145181 Helianthus annuus HOM05D005472 ORTHO05D005897 3.2e-36 156.8 267 36.0
SalBow7G1801 Salvia bowleyana HOM05D005472 ORTHO05D005897 3.2e-36 156.8 383 34.5
Lsat_1_v5_gn_9_46920 Lactuca sativa HOM05D005472 ORTHO05D005897 1.3e-34 151.4 342 33.0
A07p16090 Brassica napus HOM05D005472 ORTHO05D005897 8.6e-34 148.7 225 39.6
DCAR_023016 Daucus carota HOM05D005472 ORTHO05D005897 8.1e-32 142.1 299 34.1
TWI56G0716 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 8.1e-32 142.1 182 47.8
Migut.C00835 Erythranthe guttata HOM05D005472 ORTHO05D005897 8.9e-31 138.7 369 30.1
MD08G1013200 Malus domestica HOM05D005472 ORTHO05D005897 2.6e-30 137.1 163 51.5
HPP92_025683 Vanilla planifolia HOM05D005472 ORTHO05D005897 4.9e-29 132.9 275 34.9
ATR0810G127 Amborella trichopoda HOM05D005472 ORTHO05D005897 7.1e-28 129.0 244 35.7
SGA_v2.0_scaffold11G05917 Striga asiatica HOM05D005472 ORTHO05D005897 7.1e-28 129.0 373 30.3
Actinidia16989 Actinidia chinensis HOM05D005472 ORTHO05D005897 1.7e-26 124.4 275 33.1
Rhsim06G0021600 Rhododendron simsii HOM05D005472 ORTHO05D005897 2.3e-26 124.0 379 30.3
PGR031G2226 Punica granatum HOM05D005472 ORTHO05D005897 1.1e-25 121.7 225 37.8
Sc02g0008580 Simmondsia chinensis HOM05D005472 ORTHO05D005897 1.9e-25 120.9 357 31.9
unitig_0.g2085 Utricularia gibba HOM05D005472 ORTHO05D005897 1.3e-24 118.2 354 30.5
CANSAT78G2470 Cannabis sativa HOM05D005472 ORTHO05D005897 1.8e-23 114.4 118 49.2
Aqoxy5G01787 Aquilegia oxysepala HOM05D000073 ORTHO05D000033 1.7e-21 107.8 198 36.4
Os04g0117200 Oryza sativa ssp. japonica HOM05D005472 ORTHO05D005897 6.4e-21 105.9 389 27.2
CAN.G1271.17 Capsicum annuum HOM05D005472 ORTHO05D005897 3.2e-20 103.6 250 35.6
Zm00001eb121210 Zea mays HOM05D005472 ORTHO05D005897 9.3e-20 102.1 221 34.4
MSTRG.25248 Avicennia marina HOM05D005472 ORTHO05D005897 3.0e-18 97.1 166 41.0
ECA232G3880 Erigeron canadensis HOM05D005472 ORTHO05D005897 3.0e-18 97.1 216 29.2
MD00G1092800 Malus domestica HOM05D005472 ORTHO05D005897 3.6e-16 90.1 105 41.9
SEGI_34762 Sequoiadendron giganteum HOM05D005472 ORTHO05D005897 8.1e-16 89.0 280 24.3
SGA_v2.0_scaffold92G28230 Striga asiatica HOM05D005472 ORTHO05D005897 6.4e-13 79.3 373 26.3
Aqoxy2G01737 Aquilegia oxysepala HOM05D017957 ORTHO05D005897 1.3e-10 71.6 237 26.6
Aqoxy7G02104 Aquilegia oxysepala HOM05D003461 ORTHO05D005897 1.9e-09 67.8 285 24.6
MBI09_g43704_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 9.6e-09 65.5 144 34.7
BcaB08g37342 Brassica carinata HOM05D005472 ORTHO05D005897 6.9e-07 59.3 56 53.6
BcaB08g36328 Brassica carinata HOM05D005472 ORTHO05D005897 9.0e-07 58.9 145 32.4
Dinv39518 Davidia involucrata HOM05D005472 ORTHO05D005897 4.5e-06 56.6 274 25.5


User provided reference genes

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