Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G145800 Carya illinoinensis HOM05D005393 ORTHO05D006257 4.1e-240 834.3 426 100.0
Cfa006180 Carpinus fangiana HOM05D005393 ORTHO05D006257 1.6e-191 672.9 428 79.0
Haze_04666 Corylus avellana HOM05D005393 ORTHO05D006257 4.8e-188 661.4 429 78.6
QL02p012400 Quercus lobata HOM05D005393 ORTHO05D006257 4.3e-181 638.3 425 75.8
CSS0039974 Camellia sinensis var. sinensis HOM05D005393 ORTHO05D006257 7.4e-149 531.2 427 63.5
Actinidia15447 Actinidia chinensis HOM05D005393 ORTHO05D006257 1.3e-145 520.4 426 62.9
Rhsim06G0018100 Rhododendron simsii HOM05D005393 ORTHO05D006257 3.2e-144 515.8 427 63.7
Manes.18G010800 Manihot esculenta HOM05D005393 ORTHO05D006257 9.4e-144 514.2 427 62.1
GSVIVG01009966001 Vitis vinifera HOM05D005393 ORTHO05D006257 2.1e-143 513.1 426 62.2
TAR625G0839 Trochodendron aralioides HOM05D005393 ORTHO05D006257 8.8e-142 507.7 426 60.3
vmacro07566 Vaccinium macrocarpon HOM05D005393 ORTHO05D006257 2.6e-141 506.1 426 61.3
Potri.005G242900 Populus trichocarpa HOM05D005393 ORTHO05D006257 1.6e-138 496.9 428 60.5
MD08G1009600 Malus domestica HOM05D005393 ORTHO05D006257 1.6e-135 486.9 446 58.5
Lalb_Chr08g0246221 Lupinus albus HOM05D005393 ORTHO05D006257 8.0e-135 484.6 427 58.3
ClCG08G014060 Citrullus lanatus HOM05D005393 ORTHO05D006257 1.4e-134 483.8 427 59.5
TWI36G1703 Tripterygium wilfordii HOM05D005393 ORTHO05D006257 4.0e-134 482.3 426 60.6
CsaV3_2G024390 Cucumis sativus L. HOM05D005393 ORTHO05D006257 1.7e-132 476.9 428 58.9
Sed0019030 Sechium edule HOM05D005393 ORTHO05D006257 9.1e-131 471.1 421 58.2
THA.LOC104813224 Tarenaya hassleriana HOM05D005393 ORTHO05D006257 2.0e-130 469.9 426 54.9
MELO3C011344.2 Cucumis melo HOM05D005393 ORTHO05D006257 3.5e-130 469.2 425 58.4
Lj1g0025002 Lotus japonicus HOM05D005393 ORTHO05D006257 4.5e-130 468.8 431 57.8
Oeu051167.1 Olea europaea HOM05D005393 ORTHO05D006257 4.5e-130 468.8 426 57.5
RcHm_v2.0_Chr6g0303441 Rosa chinensis HOM05D005393 ORTHO05D006257 5.9e-130 468.4 438 59.4
FAN11G2844 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.9e-128 463.4 424 56.6
DCAR_013885 Daucus carota HOM05D005393 ORTHO05D006257 1.2e-127 460.7 423 55.6
FvH4_2g38110 Fragaria vesca HOM05D005393 ORTHO05D006257 4.7e-127 458.8 439 58.3
FvH4_3g40530 Fragaria vesca HOM05D005393 ORTHO05D006257 4.7e-127 458.8 424 56.1
FAN21G0637 Fragaria x ananassa HOM05D005393 ORTHO05D006257 6.1e-127 458.4 421 56.1
Eucgr.H00932 Eucalyptus grandis HOM05D005393 ORTHO05D006257 4.0e-126 455.7 427 54.6
Ciclev10001305m.g Citrus clementina HOM05D005393 ORTHO05D006257 6.8e-126 454.9 426 56.3
Psat0s1401g0120 Pisum sativum HOM05D005393 ORTHO05D006257 2.6e-125 453.0 427 58.1
Dinv39544 Davidia involucrata HOM05D005393 ORTHO05D006257 7.5e-125 451.4 375 62.7
MSTRG.1171 Avicennia marina HOM05D005393 ORTHO05D006257 4.1e-123 445.7 426 53.8
FAN16G1012 Fragaria x ananassa HOM05D005393 ORTHO05D006257 4.1e-123 445.7 424 55.0
PGR031G3016 Punica granatum HOM05D005393 ORTHO05D006257 1.6e-122 443.7 429 55.2
MBI05_g23374_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 2.9e-121 439.5 426 54.9
Thecc.09G106500 Theobroma cacao HOM05D005393 ORTHO05D006257 8.6e-121 438.0 428 55.1
RcHm_v2.0_Chr5g0073211 Rosa chinensis HOM05D005393 ORTHO05D006257 2.5e-120 436.4 429 55.2
AUR62013927 Chenopodium quinoa HOM05D005393 ORTHO05D006257 1.6e-119 433.7 426 53.8
Cc10_g01360 Coffea canephora HOM05D005393 ORTHO05D006257 4.7e-119 432.2 427 53.9
Atru.chr13.247 Acer truncatum HOM05D005393 ORTHO05D006257 8.0e-119 431.4 375 57.9
EL10Ac1g02146 Beta vulgaris HOM05D005393 ORTHO05D006257 1.0e-118 431.0 426 53.5
AUR62018264 Chenopodium quinoa HOM05D005393 ORTHO05D006257 5.2e-118 428.7 427 52.9
Lj4A800T35 Lonicera japonica HOM05D005393 ORTHO05D006257 1.5e-117 427.2 392 58.4
TPR.G17177 Trifolium pratense HOM05D005393 ORTHO05D006257 2.6e-117 426.4 427 55.0
Ca_15477_v3 Cicer arietinum L. HOM05D005393 ORTHO05D006257 3.4e-117 426.0 391 58.6
arahy.Tifrunner.gnm1.ann1.XU63JK Arachis hypogaea HOM05D005393 ORTHO05D006257 7.5e-117 424.9 426 54.5
arahy.Tifrunner.gnm1.ann1.ZND7EK Arachis hypogaea HOM05D005393 ORTHO05D006257 9.8e-117 424.5 426 54.7
FAN15G1059 Fragaria x ananassa HOM05D005393 ORTHO05D006257 9.8e-117 424.5 399 58.6
SalBow7G1577 Salvia bowleyana HOM05D005393 ORTHO05D006257 9.8e-117 424.5 426 51.6
Duzib187G0945 Durio zibethinus HOM05D005393 ORTHO05D006257 2.2e-116 423.3 427 53.9
Medtr3g114130 Medicago truncatula HOM05D005393 ORTHO05D006257 2.2e-116 423.3 427 54.3
COL.COLO4_34816 Corchorus olitorius HOM05D005393 ORTHO05D006257 1.1e-115 421.0 428 53.5
Glyma.04G022700 Glycine max HOM05D005393 ORTHO05D006257 1.1e-115 421.0 430 55.6
Nitab4.5_0001663g0130 Nicotiana tabacum HOM05D005393 ORTHO05D006257 1.1e-115 421.0 426 52.6
Gohir.D05G026300 Gossypium hirsutum HOM05D005393 ORTHO05D006257 4.1e-115 419.1 428 53.5
Thhalv10007713m.g Eutrema salsugineum HOM05D005393 ORTHO05D006257 7.0e-115 418.3 427 51.5
Gorai.010G073400 Gossypium raimondii HOM05D005393 ORTHO05D006257 7.0e-115 418.3 428 54.2
Gorai.009G026400 Gossypium raimondii HOM05D005393 ORTHO05D006257 9.2e-115 417.9 428 53.3
Migut.C00880 Erythranthe guttata HOM05D005393 ORTHO05D006257 2.7e-114 416.4 426 50.9
Nitab4.5_0000147g0020 Nicotiana tabacum HOM05D005393 ORTHO05D006257 4.5e-114 415.6 426 51.6
Carub.0001s1094 Capsella rubella HOM05D005393 ORTHO05D006257 1.0e-113 414.5 427 52.2
FAN25G1265 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.0e-113 414.5 424 53.5
Gohir.A05G024800 Gossypium hirsutum HOM05D005393 ORTHO05D006257 1.9e-112 410.2 428 52.3
Aqoxy3G02145 Aquilegia oxysepala HOM05D005393 ORTHO05D006257 9.5e-112 407.9 435 51.5
TPR.G38234 Trifolium pratense HOM05D005393 ORTHO05D006257 2.1e-111 406.8 427 53.9
Solyc04g015400.3 Solanum lycopersicum HOM05D005393 ORTHO05D006257 6.1e-111 405.2 430 52.6
Sp1g09970 Schrenkiella parvula HOM05D005393 ORTHO05D006257 2.3e-110 403.3 429 50.8
BcaC05g24995 Brassica carinata HOM05D005393 ORTHO05D006257 4.0e-110 402.5 432 50.7
BolC5t29697H Brassica oleracea HOM05D005393 ORTHO05D006257 5.2e-110 402.1 432 50.5
FAN27G3400 Fragaria x ananassa HOM05D005393 ORTHO05D006257 5.2e-110 402.1 416 55.3
Sopen04g007470 Solanum pennellii HOM05D005393 ORTHO05D006257 1.2e-109 401.0 422 52.6
Solyc04g015380.1 Solanum lycopersicum HOM05D005393 ORTHO05D006257 1.5e-109 400.6 427 51.3
AL1G22400 Arabidopsis lyrata HOM05D005393 ORTHO05D006257 2.6e-109 399.8 426 49.8
AT1G11320 Arabidopsis thaliana HOM05D005393 ORTHO05D006257 4.4e-109 399.1 427 48.9
Gohir.A06G064400 Gossypium hirsutum HOM05D005393 ORTHO05D006257 9.8e-109 397.9 428 52.3
CARHR011570 Cardamine hirsuta HOM05D005393 ORTHO05D006257 3.7e-108 396.0 428 49.8
VMungo1309G1297 Vigna mungo HOM05D005393 ORTHO05D006257 3.7e-108 396.0 420 51.4
Sc15g0004770 Simmondsia chinensis HOM05D005393 ORTHO05D006257 8.3e-108 394.8 392 54.3
BraA06t23994Z Brassica rapa HOM05D005393 ORTHO05D006257 2.4e-107 393.3 432 49.5
Hund05166 Selenicereus undatus HOM05D005393 ORTHO05D006257 2.4e-107 393.3 467 47.5
Sopen04g007450 Solanum pennellii HOM05D005393 ORTHO05D006257 3.2e-107 392.9 427 50.6
A06p07940 Brassica napus HOM05D005393 ORTHO05D006257 2.7e-106 389.8 432 50.2
Solyc04g015430.4 Solanum lycopersicum HOM05D005393 ORTHO05D006257 7.8e-106 388.3 429 50.1
Aa31LG1G3380 Aethionema arabicum HOM05D005393 ORTHO05D006257 1.0e-105 387.9 426 49.8
Peaxi162Scf01286g00014 Petunia axillaris HOM05D005393 ORTHO05D006257 1.7e-105 387.1 374 54.3
Sopen04g007480 Solanum pennellii HOM05D005393 ORTHO05D006257 8.6e-105 384.8 429 49.9
arahy.Tifrunner.gnm1.ann1.00YXRD Arachis hypogaea HOM05D005393 ORTHO05D006257 2.5e-104 383.3 426 50.7
BcaC05g24992 Brassica carinata HOM05D005393 ORTHO05D006257 6.2e-103 378.6 429 48.7
PSO170G5793 Papaver somniferum HOM05D005393 ORTHO05D006257 6.2e-103 378.6 462 46.8
Dinv31876 Davidia involucrata HOM05D005393 ORTHO05D006257 1.1e-102 377.9 365 54.8
Sopen04g007460 Solanum pennellii HOM05D005393 ORTHO05D006257 1.2e-101 374.4 429 49.0
PSO700G0289 Papaver somniferum HOM05D005393 ORTHO05D006257 5.8e-101 372.1 466 46.4
Prupe.1G361500 Prunus persica HOM05D005393 ORTHO05D006257 3.7e-100 369.4 328 58.2
Solyc04g015390.2 Solanum lycopersicum HOM05D005393 ORTHO05D006257 4.9e-100 369.0 423 49.2
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 6.4e-100 368.6 420 48.3
Ah.00g000790 Amaranthus hybridus HOM05D005393 ORTHO05D006257 2.3e-94 350.1 388 50.0
A08p33510 Brassica napus HOM05D000013 ORTHO05D000011 4.0e-94 349.4 418 46.9
HanXRQChr13g0386891 Helianthus annuus HOM05D005393 ORTHO05D006257 2.6e-93 346.7 426 47.7
Phvul.009G018400 Phaseolus vulgaris HOM05D005393 ORTHO05D006257 4.4e-93 345.9 419 47.3
BcaC05g25006 Brassica carinata HOM05D005393 ORTHO05D006257 3.7e-92 342.8 427 45.2
BraA08t35267Z Brassica rapa HOM05D000013 ORTHO05D000011 1.1e-91 341.3 428 46.3
ECA233G5167 Erigeron canadensis HOM05D005393 ORTHO05D006257 1.0e-89 334.7 374 50.3
Lsat_1_v5_gn_8_29721 Lactuca sativa HOM05D005393 ORTHO05D006257 1.1e-88 331.3 432 45.1
unitig_46.g18035 Utricularia gibba HOM05D005393 ORTHO05D006257 1.5e-88 330.9 395 44.8
C05p09550 Brassica napus HOM05D005393 ORTHO05D006257 5.6e-88 328.9 368 50.0
ATR0752G131 Amborella trichopoda HOM05D005393 ORTHO05D006257 1.8e-78 297.4 408 43.4
HPP92_022185 Vanilla planifolia HOM05D005393 ORTHO05D006257 1.3e-76 291.2 427 40.3
HPP92_022193 Vanilla planifolia HOM05D005393 ORTHO05D006257 2.9e-76 290.0 427 39.8
BolC8t49083H Brassica oleracea HOM05D005393 ORTHO05D006257 3.5e-74 283.1 342 49.4
CDE05G3077 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 1.1e-70 271.6 374 40.4
CDE05G0353 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 5.6e-64 249.2 360 39.4
MBI05_g40808_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 1.3e-63 248.1 212 59.9
Cpa.g.sc26.290 Carica papaya HOM05D005393 ORTHO05D006257 3.7e-55 219.9 189 57.1
Lsat_1_v5_gn_4_160601 Lactuca sativa HOM05D005393 ORTHO05D006257 1.1e-51 208.4 259 48.3
Os06g0724200 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 3.2e-51 206.8 423 32.6
Nn6g31969 Nelumbo nucifera HOM05D005393 ORTHO05D006257 8.7e-49 198.7 207 50.7
C08p14400 Brassica napus HOM05D005393 ORTHO05D006257 2.5e-48 197.2 342 36.3
Nn6g31970 Nelumbo nucifera HOM05D005393 ORTHO05D006257 1.2e-45 188.3 162 59.9
SEGI_40641 Sequoiadendron giganteum HOM05D005393 ORTHO05D006257 1.2e-45 188.3 461 31.2
Mapoly0004s0136 Marchantia polymorpha HOM05D005393 ORTHO05D006257 3.4e-45 186.8 446 32.1
Zm00001eb272190 Zea mays HOM05D005393 ORTHO05D006257 7.7e-45 185.7 391 33.5
Zm00001eb222750 Zea mays HOM05D005393 ORTHO05D006257 6.1e-42 176.0 434 32.0
AagrBONN_evm.TU.Sc2ySwM_362.761 Anthoceros agrestis HOM05D005393 ORTHO05D006257 1.4e-41 174.9 447 31.1
SMO141G0148 Selaginella moellendorffii HOM05D046829 ORTHO05D006257 2.2e-39 167.5 457 30.6
BcaB03g13262 Brassica carinata HOM05D005393 ORTHO05D006257 8.2e-39 165.6 429 29.6
Pp3c4_19410 Physcomitrium patens HOM05D005393 ORTHO05D006257 1.2e-34 151.8 492 27.8
Os10g0438300 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 5.1e-33 146.4 402 29.4
AagrBONN_evm.TU.Sc2ySwM_362.762 Anthoceros agrestis HOM05D005393 ORTHO05D006257 3.1e-30 137.1 436 29.1
PGSC0003DMG400027267 Solanum tuberosum HOM05D005393 ORTHO05D006257 4.5e-29 133.3 117 57.3
Pp3c3_18780 Physcomitrium patens HOM05D005393 ORTHO05D006257 9.1e-22 109.0 210 33.3
Pp3c26_6520 Physcomitrium patens HOM05D005393 ORTHO05D006257 2.2e-20 104.4 210 32.9
CBR_g46669 Chara braunii HOM05D000019 ORTHO05D000002 2.9e-20 104.0 469 24.5
TPR.G21884 Trifolium pratense HOM05D005393 ORTHO05D006257 1.8e-17 94.7 88 58.0
MD15G1008500 Malus domestica HOM05D005393 ORTHO05D006257 2.3e-17 94.4 73 58.9
FAN11G0106 Fragaria x ananassa HOM05D005393 ORTHO05D006257 6.8e-17 92.8 238 31.1
TPR.G684 Trifolium pratense HOM05D005393 ORTHO05D006257 6.8e-17 92.8 76 59.2
BcaB08g37392 Brassica carinata HOM05D000013 ORTHO05D000011 4.5e-13 80.1 211 30.3
FvH4_3g40670 Fragaria vesca HOM05D005393 ORTHO05D006257 5.5e-11 73.2 53 62.3
TPR.G890 Trifolium pratense HOM05D005393 ORTHO05D006257 2.1e-10 71.2 63 54.0
FAN16G0769 Fragaria x ananassa HOM05D005393 ORTHO05D006257 6.8e-09 66.2 59 57.6
MCO06G199 Micromonas commoda HOM05D005393 ORTHO05D268998 2.8e-07 60.8 370 25.1


User provided reference genes

Program Settings