Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G145400 Carya illinoinensis HOM05D000228 ORTHO05D002228 8.2e-44 179.9 83 100.0
CiPaw.15G055700 Carya illinoinensis HOM05D000228 ORTHO05D002228 4.8e-12 74.3 75 54.7
Sed0023264 Sechium edule HOM05D000228 ORTHO05D002228 2.2e-09 65.5 83 47.0
Lj4A59G43 Lonicera japonica HOM05D000228 ORTHO05D002228 6.5e-09 63.9 83 47.0
Nn1g04844 Nelumbo nucifera HOM05D000228 ORTHO05D002228 6.5e-09 63.9 71 50.7
Lsat_1_v5_gn_6_112221 Lactuca sativa HOM05D000228 ORTHO05D002228 1.9e-08 62.4 53 56.6
Sed0006832 Sechium edule HOM05D000228 ORTHO05D002228 1.9e-08 62.4 72 52.8
Lalb_Chr23g0267031 Lupinus albus HOM05D000228 ORTHO05D002228 2.5e-08 62.0 30 90.0
Haze_18017 Corylus avellana HOM05D000228 ORTHO05D002228 3.2e-08 61.6 30 90.0
Dinv39311 Davidia involucrata HOM05D000228 ORTHO05D002228 3.2e-08 61.6 33 84.8
Actinidia22634 Actinidia chinensis HOM05D000228 ORTHO05D002228 4.2e-08 61.2 30 90.0
Dinv35955 Davidia involucrata HOM05D000228 ORTHO05D002228 4.2e-08 61.2 33 84.8
ECA232G4002 Erigeron canadensis HOM05D000228 ORTHO05D002228 4.2e-08 61.2 33 78.8
MD08G1099700 Malus domestica HOM05D000228 ORTHO05D002228 4.2e-08 61.2 69 53.6
MD15G1082000 Malus domestica HOM05D000228 ORTHO05D002228 4.2e-08 61.2 69 53.6
Actinidia23283 Actinidia chinensis HOM05D000228 ORTHO05D002228 5.5e-08 60.8 49 63.3
Potri.014G028300 Populus trichocarpa HOM05D000228 ORTHO05D002228 5.5e-08 60.8 81 49.4
Sabra14G0019400 Salix brachista HOM05D000228 ORTHO05D002228 5.5e-08 60.8 81 49.4
TAR628G1624 Trochodendron aralioides HOM05D000228 ORTHO05D002228 5.5e-08 60.8 30 90.0
Glyma.04G039200 Glycine max HOM05D000228 ORTHO05D002228 7.2e-08 60.5 30 86.7
TAR381G1359 Trochodendron aralioides HOM05D000228 ORTHO05D002228 7.2e-08 60.5 33 81.8
EL10As7g23740 Beta vulgaris HOM05D000228 ORTHO05D002228 9.4e-08 60.1 29 89.7
Cpa.g.sc49.25 Carica papaya HOM05D000228 ORTHO05D002228 9.4e-08 60.1 36 77.8
Lsat_1_v5_gn_4_126140 Lactuca sativa HOM05D000228 ORTHO05D002228 9.4e-08 60.1 33 81.8
Nitab4.5_0000287g0230 Nicotiana tabacum HOM05D000228 ORTHO05D002228 9.4e-08 60.1 30 86.7
Nitab4.5_0002760g0040 Nicotiana tabacum HOM05D000228 ORTHO05D002228 9.4e-08 60.1 30 86.7
Phvul.009G065400 Phaseolus vulgaris HOM05D000228 ORTHO05D002228 9.4e-08 60.1 30 83.3
HanXRQChr16g0508131 Helianthus annuus HOM05D000228 ORTHO05D002228 1.2e-07 59.7 36 75.0
Hma1.2p1_0360F.1_g135540 Hydrangea macrophylla HOM05D000228 ORTHO05D002228 1.2e-07 59.7 33 81.8
Manes.05G174300 Manihot esculenta HOM05D000228 ORTHO05D002228 1.2e-07 59.7 29 89.7
Medtr3g101770 Medicago truncatula HOM05D000228 ORTHO05D002228 1.2e-07 59.7 30 86.7
AUR62031367 Chenopodium quinoa HOM05D000228 ORTHO05D002228 1.6e-07 59.3 29 89.7
AUR62043209 Chenopodium quinoa HOM05D000228 ORTHO05D002228 1.6e-07 59.3 29 89.7
ClCG05G019910 Citrullus lanatus HOM05D000228 ORTHO05D002228 1.6e-07 59.3 63 52.4
Ca_15946_v3 Cicer arietinum L. HOM05D000228 ORTHO05D002228 2.1e-07 58.9 28 85.7
ECA246G0493 Erigeron canadensis HOM05D000228 ORTHO05D002228 2.1e-07 58.9 68 54.4
PSO675G4588 Papaver somniferum HOM05D000228 ORTHO05D002228 2.1e-07 58.9 73 46.6
VMungo1309G0667 Vigna mungo HOM05D000228 ORTHO05D002228 2.1e-07 58.9 28 85.7
Aqoxy6G01311 Aquilegia oxysepala HOM05D000228 ORTHO05D002228 2.7e-07 58.5 37 73.0
CAN.G1030.8 Capsicum annuum HOM05D000228 ORTHO05D002228 2.7e-07 58.5 29 89.7
Hma1.2p1_2046F.1_g312400 Hydrangea macrophylla HOM05D000228 ORTHO05D002228 2.7e-07 58.5 33 78.8
MBI06_g02562_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D002228 2.7e-07 58.5 33 75.8
Psat5g043000 Pisum sativum HOM05D000228 ORTHO05D002228 2.7e-07 58.5 28 92.9
Solyc04g078850.4 Solanum lycopersicum HOM05D000228 ORTHO05D002228 2.7e-07 58.5 29 89.7
Sopen04g032450 Solanum pennellii HOM05D000228 ORTHO05D002228 2.7e-07 58.5 29 89.7
PGSC0003DMG400008012 Solanum tuberosum HOM05D000228 ORTHO05D002228 2.7e-07 58.5 29 89.7
ATR1102G002 Amborella trichopoda HOM05D000228 ORTHO05D002228 3.6e-07 58.2 30 83.3
MSTRG.24333 Avicennia marina HOM05D000228 ORTHO05D002228 4.7e-07 57.8 29 86.2
CSS0038859 Camellia sinensis var. sinensis HOM05D000228 ORTHO05D002228 4.7e-07 57.8 29 86.2
DCAR_019450 Daucus carota HOM05D000228 ORTHO05D002228 4.7e-07 57.8 71 50.7
Migut.N02711 Erythranthe guttata HOM05D000228 ORTHO05D002228 4.7e-07 57.8 29 86.2
FvH4_2g34340 Fragaria vesca HOM05D000228 ORTHO05D002228 4.7e-07 57.8 28 89.3
FvH4_2g34360 Fragaria vesca HOM05D000228 ORTHO05D002228 4.7e-07 57.8 28 89.3
FAN15G0189 Fragaria x ananassa HOM05D000228 ORTHO05D002228 4.7e-07 57.8 28 89.3
FAN20G0515 Fragaria x ananassa HOM05D000228 ORTHO05D002228 4.7e-07 57.8 28 89.3
FAN24G1516 Fragaria x ananassa HOM05D000228 ORTHO05D002228 4.7e-07 57.8 28 89.3
FAN27G1478 Fragaria x ananassa HOM05D000228 ORTHO05D002228 4.7e-07 57.8 28 89.3
Gohir.A06G018900 Gossypium hirsutum HOM05D000228 ORTHO05D002228 4.7e-07 57.8 78 43.6
Gorai.010G020200 Gossypium raimondii HOM05D000228 ORTHO05D002228 4.7e-07 57.8 78 43.6
Oeu012418.1 Olea europaea HOM05D000228 ORTHO05D002228 4.7e-07 57.8 29 86.2
Prupe.1G434700 Prunus persica HOM05D000228 ORTHO05D002228 4.7e-07 57.8 28 89.3
RcHm_v2.0_Chr6g0308021 Rosa chinensis HOM05D000228 ORTHO05D002228 4.7e-07 57.8 28 89.3
SalBow7G4292 Salvia bowleyana HOM05D000228 ORTHO05D002228 4.7e-07 57.8 29 86.2
CANSAT25G1965 Cannabis sativa HOM05D000228 ORTHO05D002228 1.0e-06 56.6 27 85.2
Thecc.08G006100 Theobroma cacao HOM05D000228 ORTHO05D002228 1.0e-06 56.6 28 82.1
TWI56G1409 Tripterygium wilfordii HOM05D000228 ORTHO05D002228 1.0e-06 56.6 30 80.0
Gohir.A03G076600 Gossypium hirsutum HOM05D000228 ORTHO05D002228 1.4e-06 56.2 48 56.2
Gorai.005G102400 Gossypium raimondii HOM05D000228 ORTHO05D002228 1.4e-06 56.2 35 71.4
Lj1g0007198 Lotus japonicus HOM05D000228 ORTHO05D002228 1.4e-06 56.2 27 88.9
SGA_v2.0_scaffold28G11775 Striga asiatica HOM05D000228 ORTHO05D002228 1.4e-06 56.2 70 41.4
CDE05G2231 Ceratophyllum demersum HOM05D000228 ORTHO05D002228 1.8e-06 55.8 34 67.6
Ciclev10002377m.g Citrus clementina HOM05D000228 ORTHO05D002228 1.8e-06 55.8 28 82.1
CsaV3_4G034350 Cucumis sativus L. HOM05D000228 ORTHO05D002228 1.8e-06 55.8 30 76.7
QL02p004706 Quercus lobata HOM05D000228 ORTHO05D002228 1.8e-06 55.8 29 86.2
TWI36G1241 Tripterygium wilfordii HOM05D000228 ORTHO05D002228 1.8e-06 55.8 71 45.1
Cc10_g04080 Coffea canephora HOM05D000228 ORTHO05D002228 2.3e-06 55.5 29 82.8
Glyma.06G040300 Glycine max HOM05D000228 ORTHO05D002228 2.3e-06 55.5 26 92.3
Os02g0766000 Oryza sativa ssp. japonica HOM05D000228 ORTHO05D002228 2.3e-06 55.5 28 85.7
PSO541G1766 Papaver somniferum HOM05D000228 ORTHO05D002228 2.3e-06 55.5 32 75.0
Zm00001eb193650 Zea mays HOM05D000228 ORTHO05D002228 2.3e-06 55.5 28 85.7
CDE06G0709 Ceratophyllum demersum HOM05D000228 ORTHO05D002228 3.0e-06 55.1 30 73.3
MELO3C016755.2 Cucumis melo HOM05D000228 ORTHO05D002228 3.0e-06 55.1 30 76.7
DCAR_020926 Daucus carota HOM05D000228 ORTHO05D002228 3.0e-06 55.1 30 83.3
Gohir.D06G017300 Gossypium hirsutum HOM05D000228 ORTHO05D002228 3.0e-06 55.1 35 71.4
SGA_v2.0_scaffold14G06999 Striga asiatica HOM05D000228 ORTHO05D002228 3.0e-06 55.1 49 53.1
Duzib093G1063 Durio zibethinus HOM05D000228 ORTHO05D002228 4.0e-06 54.7 28 78.6
Gohir.D02G091400 Gossypium hirsutum HOM05D000228 ORTHO05D002228 4.0e-06 54.7 28 78.6
CDE02G4011 Ceratophyllum demersum HOM05D000228 ORTHO05D002228 5.2e-06 54.3 30 73.3
Migut.C00573 Erythranthe guttata HOM05D000228 ORTHO05D002228 8.8e-06 53.5 27 85.2
Hund12944 Selenicereus undatus HOM05D000228 ORTHO05D002228 8.8e-06 53.5 26 84.6
Sc02g0007170 Simmondsia chinensis HOM05D000228 ORTHO05D002228 8.8e-06 53.5 33 72.7


User provided reference genes

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