Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G144400 Carya illinoinensis HOM05D000901 ORTHO05D004766 3.9e-47 191.0 92 100.0
COL.COLO4_26098 Corchorus olitorius HOM05D000901 ORTHO05D004766 1.1e-25 119.8 84 66.7
Thecc.08G049900 Theobroma cacao HOM05D000901 ORTHO05D004766 1.1e-25 119.8 84 66.7
Manes.05G143600 Manihot esculenta HOM05D000901 ORTHO05D004766 9.4e-25 116.7 91 56.0
Duzib041G0373 Durio zibethinus HOM05D000901 ORTHO05D004766 1.2e-24 116.3 84 64.3
MD08G1008700 Malus domestica HOM05D000901 ORTHO05D004766 2.7e-24 115.2 87 59.8
Thecc.08G050000 Theobroma cacao HOM05D000901 ORTHO05D004766 1.4e-23 112.8 84 63.1
Medtr0332s0020 Medicago truncatula HOM05D000901 ORTHO05D004766 2.3e-23 112.1 90 55.6
Dinv31885 Davidia involucrata HOM05D000901 ORTHO05D001160 6.8e-23 110.5 83 61.4
Gorai.010G001700 Gossypium raimondii HOM05D000901 ORTHO05D004766 1.5e-22 109.4 83 61.4
EL10Ac1g02116 Beta vulgaris HOM05D000901 ORTHO05D004766 2.0e-22 109.0 88 52.3
MD15G1007500 Malus domestica HOM05D000901 ORTHO05D004766 2.6e-22 108.6 87 56.3
Gohir.A06G001500 Gossypium hirsutum HOM05D000901 ORTHO05D004766 3.4e-22 108.2 83 61.4
Prupe.1G360400 Prunus persica HOM05D000901 ORTHO05D004766 5.7e-22 107.5 88 54.5
Lj4A800T39 Lonicera japonica HOM05D000901 ORTHO05D004766 7.5e-22 107.1 90 56.7
ClCG08G014120 Citrullus lanatus HOM05D000901 ORTHO05D004766 1.3e-21 106.3 90 54.4
Migut.C00891 Erythranthe guttata HOM05D000901 ORTHO05D004766 1.3e-21 106.3 84 59.5
Eucgr.F03719 Eucalyptus grandis HOM05D000901 ORTHO05D004766 1.7e-21 105.9 84 56.0
CAN.G1517.1 Capsicum annuum HOM05D000901 ORTHO05D004766 2.2e-21 105.5 85 58.8
Potri.005G244400 Populus trichocarpa HOM05D000901 ORTHO05D004766 2.8e-21 105.1 84 54.8
TPR.G9568 Trifolium pratense HOM05D000901 ORTHO05D004766 2.8e-21 105.1 89 52.8
arahy.Tifrunner.gnm1.ann1.774XMB Arachis hypogaea HOM05D000901 ORTHO05D004766 3.7e-21 104.8 84 54.8
arahy.Tifrunner.gnm1.ann1.K685T3 Arachis hypogaea HOM05D000901 ORTHO05D004766 3.7e-21 104.8 84 54.8
CiPaw.07G144500 Carya illinoinensis HOM05D000901 ORTHO05D004766 3.7e-21 104.8 84 56.0
Phvul.009G019200 Phaseolus vulgaris HOM05D000901 ORTHO05D004766 3.7e-21 104.8 91 50.5
Sabra05G0189000 Salix brachista HOM05D000901 ORTHO05D004766 6.3e-21 104.0 84 54.8
SalBow7G4280 Salvia bowleyana HOM05D000901 ORTHO05D004766 6.3e-21 104.0 84 54.8
vmacro21856 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 6.3e-21 104.0 84 56.0
CSS0047191 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 8.3e-21 103.6 88 51.1
CSS0049889 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 8.3e-21 103.6 88 51.1
Hund05158 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.1e-20 103.2 86 54.7
Hund05161 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.1e-20 103.2 86 54.7
CANSAT25G0446 Cannabis sativa HOM05D000901 ORTHO05D004766 1.4e-20 102.8 88 53.4
FvH4_2g38030 Fragaria vesca HOM05D000901 ORTHO05D004766 1.4e-20 102.8 84 53.6
FAN20G3106 Fragaria x ananassa HOM05D000901 ORTHO05D004766 1.4e-20 102.8 84 53.6
Glyma.04G021300 Glycine max HOM05D000901 ORTHO05D004766 1.4e-20 102.8 84 53.6
TWI56G0802 Tripterygium wilfordii HOM05D000901 ORTHO05D004766 1.4e-20 102.8 83 53.0
RcHm_v2.0_Chr6g0303571 Rosa chinensis HOM05D000901 ORTHO05D004766 1.8e-20 102.4 84 52.4
Haze_22688 Corylus avellana HOM05D000901 ORTHO05D004766 2.4e-20 102.1 88 52.3
Eucgr.F01691 Eucalyptus grandis HOM05D000901 ORTHO05D004766 2.4e-20 102.1 84 54.8
TAR381G0201 Trochodendron aralioides HOM05D000901 ORTHO05D004766 3.1e-20 101.7 84 56.0
Nitab4.5_0002730g0020 Nicotiana tabacum HOM05D000901 ORTHO05D004766 4.1e-20 101.3 85 54.1
Hund01706 Selenicereus undatus HOM05D000901 ORTHO05D004766 4.1e-20 101.3 85 52.9
VMungo1309G2869 Vigna mungo HOM05D002716 ORTHO05D003324 4.1e-20 101.3 84 52.4
Cpa.g.sc26.277 Carica papaya HOM05D000901 ORTHO05D004766 5.4e-20 100.9 84 52.4
Cfa013996 Carpinus fangiana HOM05D000901 ORTHO05D004766 5.4e-20 100.9 83 53.0
AUR62036698 Chenopodium quinoa HOM05D000901 ORTHO05D004766 5.4e-20 100.9 88 48.9
Psat7g082240 Pisum sativum HOM05D000901 ORTHO05D004766 5.4e-20 100.9 88 51.1
Sc15g0004710 Simmondsia chinensis HOM05D000901 ORTHO05D004766 5.4e-20 100.9 90 47.8
Lalb_Chr11g0061781 Lupinus albus HOM05D000901 ORTHO05D004766 9.1e-20 100.1 89 51.7
MSTRG.1154 Avicennia marina HOM05D000901 ORTHO05D004766 1.2e-19 99.8 84 54.8
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 1.2e-19 99.8 84 52.4
CsaV3_2G024310 Cucumis sativus L. HOM05D000901 ORTHO05D004766 1.2e-19 99.8 90 50.0
HanXRQChr06g0184521 Helianthus annuus HOM05D000901 ORTHO05D004766 1.2e-19 99.8 85 55.3
Nitab4.5_0001936g0050 Nicotiana tabacum HOM05D000901 ORTHO05D004766 1.2e-19 99.8 85 54.1
Ca_11598_v3 Cicer arietinum L. HOM05D000901 ORTHO05D004766 1.6e-19 99.4 88 50.0
QL02p012636 Quercus lobata HOM05D000901 ORTHO05D004766 1.6e-19 99.4 90 53.3
AUR62013896 Chenopodium quinoa HOM05D000901 ORTHO05D004766 2.0e-19 99.0 88 46.6
Oeu048721.1 Olea europaea HOM05D000901 ORTHO05D004766 2.0e-19 99.0 84 54.8
PGR031G2145 Punica granatum HOM05D000901 ORTHO05D004766 2.0e-19 99.0 87 48.3
Sed0006708 Sechium edule HOM05D000901 ORTHO05D004766 2.0e-19 99.0 90 51.1
Hund05157 Selenicereus undatus HOM05D000901 ORTHO05D004766 2.0e-19 99.0 85 54.1
Hund05162 Selenicereus undatus HOM05D000901 ORTHO05D004766 2.0e-19 99.0 85 54.1
Glyma.04G021400 Glycine max HOM05D000901 ORTHO05D004766 2.7e-19 98.6 84 51.2
Lj1g0003310 Lotus japonicus HOM05D000901 ORTHO05D004766 2.7e-19 98.6 88 47.7
Sopen12g031250 Solanum pennellii HOM05D000901 ORTHO05D004766 2.7e-19 98.6 85 52.9
SGA_v2.0_scaffold145G36086 Striga asiatica HOM05D000901 ORTHO05D004766 2.7e-19 98.6 84 51.2
vmacro04376 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 2.7e-19 98.6 84 54.8
Ciclev10002332m.g Citrus clementina HOM05D000901 ORTHO05D004766 5.9e-19 97.4 85 52.9
MELO3C011351.2 Cucumis melo HOM05D000901 ORTHO05D004766 5.9e-19 97.4 90 48.9
Sp5g31130 Schrenkiella parvula HOM05D000901 ORTHO05D004766 5.9e-19 97.4 84 52.4
Nitab4.5_0010135g0010 Nicotiana tabacum HOM05D000901 ORTHO05D004766 7.7e-19 97.1 85 52.9
BolC2t09354H Brassica oleracea HOM05D000901 ORTHO05D004766 1.0e-18 96.7 84 51.2
CSS0010771 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 1.0e-18 96.7 85 51.8
PGSC0003DMG400029329 Solanum tuberosum HOM05D000901 ORTHO05D004766 1.0e-18 96.7 85 54.1
AT1G76020 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 1.3e-18 96.3 88 48.9
C02p33510 Brassica napus HOM05D000901 ORTHO05D004766 1.3e-18 96.3 84 51.2
Nitab4.5_0000498g0060 Nicotiana tabacum HOM05D000901 ORTHO05D004766 1.3e-18 96.3 85 52.9
Aqoxy5G01833 Aquilegia oxysepala HOM05D000901 ORTHO05D004766 1.7e-18 95.9 85 52.9
BraA02t07071Z Brassica rapa HOM05D000901 ORTHO05D004766 1.7e-18 95.9 84 52.4
Thhalv10019591m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 1.7e-18 95.9 84 53.6
MBI05_g36763_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 2.2e-18 95.5 88 53.4
BcaC03g15640 Brassica carinata HOM05D000901 ORTHO05D004766 2.9e-18 95.1 84 50.0
MBI05_g08641_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 2.9e-18 95.1 88 52.3
Peaxi162Scf00289g00084 Petunia axillaris HOM05D000901 ORTHO05D004766 2.9e-18 95.1 85 50.6
Ah.00g000720 Amaranthus hybridus HOM05D000901 ORTHO05D004766 3.8e-18 94.7 90 47.8
Peaxi162Scf00064g00828 Petunia axillaris HOM05D000901 ORTHO05D004766 3.8e-18 94.7 85 50.6
Psat7g082200 Pisum sativum HOM05D000901 ORTHO05D004766 3.8e-18 94.7 84 53.6
MSTRG.1155 Avicennia marina HOM05D000901 ORTHO05D004766 5.0e-18 94.4 84 51.2
Actinidia29763 Actinidia chinensis HOM05D000901 ORTHO05D004766 6.5e-18 94.0 83 49.4
PSO063G0231 Papaver somniferum HOM05D000901 ORTHO05D004766 6.5e-18 94.0 84 50.0
GSVIVG01008758001 Vitis vinifera HOM05D000901 ORTHO05D004766 6.5e-18 94.0 83 53.0
Potri.002G017500 Populus trichocarpa HOM05D000901 ORTHO05D004766 8.5e-18 93.6 84 51.2
A02p20390 Brassica napus HOM05D000901 ORTHO05D004766 1.5e-17 92.8 89 48.3
AL2G36040 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 1.9e-17 92.4 88 45.5
Lj4A18T108 Lonicera japonica HOM05D000901 ORTHO05D004766 1.9e-17 92.4 84 51.2
Nn6g31933 Nelumbo nucifera HOM05D000901 ORTHO05D004766 1.9e-17 92.4 83 53.0
AT1G20225 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 2.5e-17 92.0 84 52.4
Carub.0002s2290 Capsella rubella HOM05D000901 ORTHO05D004766 2.5e-17 92.0 92 45.7
PSO782G4846 Papaver somniferum HOM05D000901 ORTHO05D004766 2.5e-17 92.0 84 48.8
Rhsim07G0249300 Rhododendron simsii HOM05D000901 ORTHO05D004766 2.5e-17 92.0 84 50.0
BcaC08g47093 Brassica carinata HOM05D000901 ORTHO05D004766 3.2e-17 91.7 84 48.8
Carub.0001s1975 Capsella rubella HOM05D000901 ORTHO05D004766 3.2e-17 91.7 88 51.1
Sp1g17990 Schrenkiella parvula HOM05D000901 ORTHO05D004766 3.2e-17 91.7 84 50.0
Solyc12g094380.2 Solanum lycopersicum HOM05D000901 ORTHO05D004766 3.2e-17 91.7 84 53.6
Sopen12g031260 Solanum pennellii HOM05D000901 ORTHO05D004766 3.2e-17 91.7 84 53.6
Actinidia37946 Actinidia chinensis HOM05D000901 ORTHO05D004766 4.2e-17 91.3 83 48.2
AL1G33070 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 4.2e-17 91.3 84 52.4
A07p41510 Brassica napus HOM05D000901 ORTHO05D004766 4.2e-17 91.3 92 47.8
Cc10_g01220 Coffea canephora HOM05D000901 ORTHO05D004766 4.2e-17 91.3 85 51.8
THA.LOC104813773 Tarenaya hassleriana HOM05D000901 ORTHO05D004766 4.2e-17 91.3 88 50.0
DCAR_013891 Daucus carota HOM05D000901 ORTHO05D004766 5.5e-17 90.9 83 54.2
CARHR069550 Cardamine hirsuta HOM05D000901 ORTHO05D004766 7.2e-17 90.5 84 47.6
Nn5g30828 Nelumbo nucifera HOM05D000901 ORTHO05D004766 7.2e-17 90.5 83 53.0
HanXRQChr14g0429411 Helianthus annuus HOM05D000901 ORTHO05D004766 9.5e-17 90.1 84 51.2
DCAR_025124 Daucus carota HOM05D000901 ORTHO05D004766 1.2e-16 89.7 84 52.4
ECA238G3494 Erigeron canadensis HOM05D000901 ORTHO05D004766 2.1e-16 89.0 85 51.8
PGR083G1908 Punica granatum HOM05D000901 ORTHO05D004766 6.1e-16 87.4 87 46.0
C06p49920 Brassica napus HOM05D000901 ORTHO05D004766 8.0e-16 87.0 85 44.7
ATR0661G262 Amborella trichopoda HOM05D000901 ORTHO05D004766 1.0e-15 86.7 88 51.1
A06p16340 Brassica napus HOM05D000901 ORTHO05D004766 1.8e-15 85.9 91 44.0
C05p18770 Brassica napus HOM05D000901 ORTHO05D004766 1.8e-15 85.9 91 44.0
BraA06t24738Z Brassica rapa HOM05D000901 ORTHO05D004766 1.8e-15 85.9 91 44.0
HPP92_025437 Vanilla planifolia HOM05D000901 ORTHO05D004766 1.8e-15 85.9 88 48.9
BcaC05g25925 Brassica carinata HOM05D000901 ORTHO05D004766 2.3e-15 85.5 85 47.1
BcaC08g47306 Brassica carinata HOM05D000901 ORTHO05D004766 2.3e-15 85.5 85 44.7
BcaC08g47307 Brassica carinata HOM05D000901 ORTHO05D004766 2.3e-15 85.5 85 44.7
AUR62036699 Chenopodium quinoa HOM05D000901 ORTHO05D004766 2.3e-15 85.5 83 48.2
Aa31LG4G6150 Aethionema arabicum HOM05D000901 ORTHO05D004766 3.0e-15 85.1 86 48.8
CARHR020720 Cardamine hirsuta HOM05D000901 ORTHO05D004766 3.0e-15 85.1 84 48.8
BolC6t37476H Brassica oleracea HOM05D000901 ORTHO05D004766 4.0e-15 84.7 85 48.2
BolC5t30582H Brassica oleracea HOM05D000901 ORTHO05D004766 6.8e-15 84.0 91 42.9
DCAR_013892 Daucus carota HOM05D000901 ORTHO05D004766 6.8e-15 84.0 83 50.6
Lsat_1_v5_gn_2_7381 Lactuca sativa HOM05D000901 ORTHO05D004766 6.8e-15 84.0 84 47.6
BcaB07g32030 Brassica carinata HOM05D000901 ORTHO05D004766 1.2e-14 83.2 84 46.4
unitig_32.g11240 Utricularia gibba HOM05D000901 ORTHO05D004766 2.6e-14 82.0 84 46.4
HPP92_022203 Vanilla planifolia HOM05D000901 ORTHO05D004766 3.4e-14 81.6 87 46.0
SGA_v2.0_scaffold292G47381 Striga asiatica HOM05D000901 ORTHO05D004766 9.8e-14 80.1 85 42.4
CDE09G0289 Ceratophyllum demersum HOM05D000901 ORTHO05D004766 1.7e-13 79.3 87 47.1
Aa31LG7G4620 Aethionema arabicum HOM05D000901 ORTHO05D004766 2.8e-13 78.6 100 41.0
HPP92_026881 Vanilla planifolia HOM05D000901 ORTHO05D004766 2.8e-13 78.6 83 47.0
Zm00001eb103900 Zea mays HOM05D000901 ORTHO05D004766 8.3e-13 77.0 87 43.7
BraA07t31683Z Brassica rapa HOM05D000901 ORTHO05D004766 2.4e-12 75.5 104 36.5
BolC6t40030H Brassica oleracea HOM05D000901 ORTHO05D004766 5.4e-12 74.3 103 36.9
BolC6t40031H Brassica oleracea HOM05D000901 ORTHO05D004766 5.4e-12 74.3 103 36.9
HPP92_003483 Vanilla planifolia HOM05D000901 ORTHO05D004766 5.4e-12 74.3 83 44.6
BcaC09g50962 Brassica carinata HOM05D000901 ORTHO05D004766 1.6e-11 72.8 58 55.2
BcaC01g02788 Brassica carinata HOM05D000901 ORTHO05D004766 3.5e-11 71.6 78 46.2
C03p60410 Brassica napus HOM05D000901 ORTHO05D004766 3.5e-11 71.6 78 46.2
BolC3t18302H Brassica oleracea HOM05D000901 ORTHO05D004766 3.5e-11 71.6 78 46.2
C03p50790 Brassica napus HOM05D000901 ORTHO05D004766 4.5e-11 71.2 78 46.2
C07p15020 Brassica napus HOM05D000901 ORTHO05D004766 4.5e-11 71.2 78 46.2
Os09g0542200 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 4.5e-11 71.2 83 42.2
Os04g0227500 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 5.9e-11 70.9 71 49.3
SEGI_34166 Sequoiadendron giganteum HOM05D000901 ORTHO05D004766 3.6e-08 61.6 83 41.0
Lj2g0002110 Lotus japonicus HOM05D000901 ORTHO05D004766 6.1e-08 60.8 88 36.4
SMO137G0357 Selaginella moellendorffii HOM05D000901 ORTHO05D004766 4.0e-07 58.2 71 40.8


User provided reference genes

Program Settings