Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G140100 Carya illinoinensis HOM05D006241 ORTHO05D007842 2.1e-40 168.3 72 100.0
CiPaw.08G071900 Carya illinoinensis HOM05D006241 ORTHO05D007842 4.2e-36 154.1 69 92.8
Gohir.A01G107600 Gossypium hirsutum HOM05D006241 ORTHO05D007842 2.7e-35 151.4 72 90.3
Prupe.1G355800 Prunus persica HOM05D006241 ORTHO05D007842 1.8e-34 148.7 65 93.8
Duzib116G0823 Durio zibethinus HOM05D006241 ORTHO05D007842 2.3e-34 148.3 72 88.9
arahy.Tifrunner.gnm1.ann1.1F1YZI Arachis hypogaea HOM05D006241 ORTHO05D007842 3.9e-34 147.5 68 88.2
arahy.Tifrunner.gnm1.ann1.1NSU2H Arachis hypogaea HOM05D006241 ORTHO05D007842 3.9e-34 147.5 68 88.2
arahy.Tifrunner.gnm1.ann1.4R2MNP Arachis hypogaea HOM05D006241 ORTHO05D007842 3.9e-34 147.5 68 88.2
arahy.Tifrunner.gnm1.ann1.L8CN1K Arachis hypogaea HOM05D006241 ORTHO05D007842 3.9e-34 147.5 68 88.2
Gorai.009G189100 Gossypium raimondii HOM05D006241 ORTHO05D007842 3.9e-34 147.5 72 88.9
FvH4_2g37630 Fragaria vesca HOM05D006241 ORTHO05D007842 5.1e-34 147.1 71 88.7
Thecc.08G056300 Theobroma cacao HOM05D006241 ORTHO05D007842 6.7e-34 146.7 72 87.5
Duzib093G0667 Durio zibethinus HOM05D006241 ORTHO05D007842 1.1e-33 146.0 72 87.5
Gohir.D01G094000 Gossypium hirsutum HOM05D006241 ORTHO05D007842 1.1e-33 146.0 72 87.5
Gorai.002G119300 Gossypium raimondii HOM05D006241 ORTHO05D007842 1.1e-33 146.0 72 87.5
Gohir.D05G183800 Gossypium hirsutum HOM05D006241 ORTHO05D007842 1.5e-33 145.6 72 87.5
Manes.05G136000 Manihot esculenta HOM05D006241 ORTHO05D007842 1.5e-33 145.6 66 90.9
Manes.18G006720 Manihot esculenta HOM05D006241 ORTHO05D007842 1.5e-33 145.6 66 89.4
Gohir.A05G180800 Gossypium hirsutum HOM05D006241 ORTHO05D007842 5.6e-33 143.7 72 86.1
Cpa.g.sc222.6 Carica papaya HOM05D006241 ORTHO05D007842 1.3e-32 142.5 71 85.9
FAN15G0812 Fragaria x ananassa HOM05D006241 ORTHO05D007842 1.6e-32 142.1 71 85.9
Nn5g30908 Nelumbo nucifera HOM05D006241 ORTHO05D007842 1.6e-32 142.1 71 84.5
COL.COLO4_21601 Corchorus olitorius HOM05D006241 ORTHO05D007842 2.1e-32 141.7 67 88.1
Duzib041G0756 Durio zibethinus HOM05D006241 ORTHO05D007842 2.8e-32 141.4 72 83.3
Cc10_g00830 Coffea canephora HOM05D006241 ORTHO05D007842 4.8e-32 140.6 68 80.9
Atru.chr13.161 Acer truncatum HOM05D006241 ORTHO05D007842 8.1e-32 139.8 69 84.1
Potri.002G012700 Populus trichocarpa HOM05D006241 ORTHO05D007842 1.1e-31 139.4 68 83.8
CSS0008517 Camellia sinensis var. sinensis HOM05D006241 ORTHO05D007842 1.4e-31 139.0 69 85.5
THA.LOC104811457 Tarenaya hassleriana HOM05D006241 ORTHO05D007842 1.4e-31 139.0 68 82.4
THA.LOC109116669 Tarenaya hassleriana HOM05D006241 ORTHO05D007842 1.4e-31 139.0 68 80.9
Cfa014051 Carpinus fangiana HOM05D006241 ORTHO05D007842 1.8e-31 138.7 65 89.2
PGR031G1817 Punica granatum HOM05D006241 ORTHO05D007842 1.8e-31 138.7 68 86.8
QL02p013848 Quercus lobata HOM05D006241 ORTHO05D007842 1.8e-31 138.7 69 81.2
Ca_19011_v3 Cicer arietinum L. HOM05D006241 ORTHO05D007842 4.0e-31 137.5 65 86.2
TAR381G1678 Trochodendron aralioides HOM05D006241 ORTHO05D007842 4.0e-31 137.5 62 88.7
Dinv39579 Davidia involucrata HOM05D006241 ORTHO05D007842 5.3e-31 137.1 66 84.8
Glyma.11G099500 Glycine max HOM05D006241 ORTHO05D007842 5.3e-31 137.1 67 86.6
Lj3g0010530 Lotus japonicus HOM05D006241 ORTHO05D007842 5.3e-31 137.1 66 86.4
Psat7g177480 Pisum sativum HOM05D006241 ORTHO05D007842 6.9e-31 136.7 67 85.1
SGA_v2.0_scaffold25G11191 Striga asiatica HOM05D006241 ORTHO05D007842 9.0e-31 136.3 62 88.7
Actinidia17033 Actinidia chinensis HOM05D006241 ORTHO05D007842 1.2e-30 136.0 66 80.3
CANSAT54G0965 Cannabis sativa HOM05D006241 ORTHO05D007842 1.5e-30 135.6 72 79.2
Glyma.12G025500 Glycine max HOM05D006241 ORTHO05D007842 1.5e-30 135.6 67 85.1
Sabra05G0192000 Salix brachista HOM05D006241 ORTHO05D007842 1.5e-30 135.6 68 82.4
Ciclev10010113m.g Citrus clementina HOM05D006241 ORTHO05D007842 2.0e-30 135.2 67 82.1
MELO3C017010.2 Cucumis melo HOM05D006241 ORTHO05D007842 2.0e-30 135.2 70 81.4
Aa31LG4G6300 Aethionema arabicum HOM05D006241 ORTHO05D007842 2.6e-30 134.8 68 82.4
Potri.005G248600 Populus trichocarpa HOM05D006241 ORTHO05D007842 2.6e-30 134.8 68 80.9
TAR376G1175 Trochodendron aralioides HOM05D006241 ORTHO05D007842 3.4e-30 134.4 61 86.9
Eucgr.F01733 Eucalyptus grandis HOM05D006241 ORTHO05D007842 5.8e-30 133.7 62 87.1
Actinidia15484 Actinidia chinensis HOM05D006241 ORTHO05D007842 7.6e-30 133.3 66 78.8
Phvul.011G027800 Phaseolus vulgaris HOM05D006241 ORTHO05D007842 7.6e-30 133.3 65 84.6
Dinv31923 Davidia involucrata HOM05D006241 ORTHO05D007842 1.3e-29 132.5 61 85.2
PSO357G0248 Papaver somniferum HOM05D006241 ORTHO05D007842 1.3e-29 132.5 62 82.3
CARHR069760 Cardamine hirsuta HOM05D006241 ORTHO05D007842 1.7e-29 132.1 68 77.9
Lalb_Chr17g0337811 Lupinus albus HOM05D006241 ORTHO05D007842 1.7e-29 132.1 68 80.9
PSO170G5266 Papaver somniferum HOM05D006241 ORTHO05D007842 2.2e-29 131.7 62 82.3
AL2G36270 Arabidopsis lyrata HOM05D006241 ORTHO05D007842 2.9e-29 131.3 67 79.1
AT1G76200 Arabidopsis thaliana HOM05D006241 ORTHO05D007842 2.9e-29 131.3 67 79.1
CDE05G0950 Ceratophyllum demersum HOM05D006241 ORTHO05D007842 2.9e-29 131.3 69 73.9
CsaV3_4G037120 Cucumis sativus L. HOM05D006241 ORTHO05D007842 3.8e-29 131.0 67 80.6
Lalb_Chr10g0094931 Lupinus albus HOM05D006241 ORTHO05D007842 3.8e-29 131.0 70 78.6
CAN.G311.105 Capsicum annuum HOM05D006241 ORTHO05D007842 4.9e-29 130.6 69 78.3
Migut.N03197 Erythranthe guttata HOM05D006241 ORTHO05D007842 4.9e-29 130.6 64 82.8
Aqoxy6G01804 Aquilegia oxysepala HOM05D006241 ORTHO05D007842 6.5e-29 130.2 58 87.9
CDE05G1511 Ceratophyllum demersum HOM05D006241 ORTHO05D007842 1.1e-28 129.4 68 73.5
PGSC0003DMG400009898 Solanum tuberosum HOM05D006241 ORTHO05D007842 1.4e-28 129.0 69 78.3
TWI12G0416 Tripterygium wilfordii HOM05D006241 ORTHO05D007842 7.1e-28 126.7 67 79.1
Thhalv10019410m.g Eutrema salsugineum HOM05D006241 ORTHO05D007842 2.1e-27 125.2 68 77.9
TWI56G0163 Tripterygium wilfordii HOM05D006241 ORTHO05D007842 2.1e-27 125.2 67 77.6
Carub.0002s2310 Capsella rubella HOM05D006241 ORTHO05D007842 6.0e-27 123.6 68 76.5
Sp5g31350 Schrenkiella parvula HOM05D006241 ORTHO05D007842 6.0e-27 123.6 68 76.5
ATR0661G361 Amborella trichopoda HOM05D006241 ORTHO05D007842 1.3e-26 122.5 68 73.5
BcaC08g47119 Brassica carinata HOM05D006241 ORTHO05D007842 3.0e-26 121.3 72 75.0
BcaC08g47281 Brassica carinata HOM05D006241 ORTHO05D007842 3.0e-26 121.3 72 75.0
A07p41770 Brassica napus HOM05D006241 ORTHO05D007842 3.0e-26 121.3 72 75.0
C06p50150 Brassica napus HOM05D006241 ORTHO05D007842 3.0e-26 121.3 72 75.0
BolC6t40055H Brassica oleracea HOM05D006241 ORTHO05D007842 3.0e-26 121.3 72 75.0
BcaC08g47115 Brassica carinata HOM05D006241 ORTHO05D007842 6.7e-26 120.2 68 73.5
BcaB02g07055 Brassica carinata HOM05D006241 ORTHO05D007842 1.1e-25 119.4 68 73.5
BraA07t31707Z Brassica rapa HOM05D006241 ORTHO05D007842 1.5e-25 119.0 68 73.5
Os05g0122900 Oryza sativa ssp. japonica HOM05D006241 ORTHO05D007842 2.5e-25 118.2 62 77.4
A07p28590 Brassica napus HOM05D006241 ORTHO05D007842 4.3e-25 117.5 68 72.1
Lsat_1_v5_gn_8_133721 Lactuca sativa HOM05D006241 ORTHO05D007842 5.7e-25 117.1 67 74.6
BcaB05g24973 Brassica carinata HOM05D006241 ORTHO05D007842 2.1e-24 115.2 62 75.8
BraA07t30500Z Brassica rapa HOM05D006241 ORTHO05D007842 2.1e-24 115.2 66 72.7
GSVIVG01008691001 Vitis vinifera HOM05D006241 ORTHO05D007842 2.1e-24 115.2 53 83.0
BcaC08g45539 Brassica carinata HOM05D006241 ORTHO05D007842 1.4e-23 112.5 64 70.3
C06p32170 Brassica napus HOM05D006241 ORTHO05D007842 1.4e-23 112.5 64 70.3
BolC6t38340H Brassica oleracea HOM05D006241 ORTHO05D007842 1.4e-23 112.5 64 70.3
BraA02t07081Z Brassica rapa HOM05D006241 ORTHO05D007842 3.1e-23 111.3 62 74.2
ECA248G1104 Erigeron canadensis HOM05D006241 ORTHO05D007842 5.3e-23 110.5 71 70.4
MD08G1003800 Malus domestica HOM05D006241 ORTHO05D007842 5.3e-23 110.5 51 90.2
Zm00001eb294120 Zea mays HOM05D006241 ORTHO05D007842 6.9e-23 110.2 62 74.2
Zm00001eb356460 Zea mays HOM05D006241 ORTHO05D007842 6.9e-23 110.2 62 74.2
MD15G1003400 Malus domestica HOM05D006241 ORTHO05D007842 2.6e-22 108.2 50 90.0
FAN20G1861 Fragaria x ananassa HOM05D006241 ORTHO05D007842 3.4e-22 107.8 50 90.0
VMungo1127G1075 Vigna mungo HOM05D006241 ORTHO05D007842 4.5e-22 107.5 52 86.5
Nitab4.5_0000588g0230 Nicotiana tabacum HOM05D006241 ORTHO05D007842 1.0e-21 106.3 51 84.3
RcHm_v2.0_Chr6g0304101 Rosa chinensis HOM05D006241 ORTHO05D007842 1.3e-21 105.9 50 86.0
AagrBONN_evm.TU.Sc2ySwM_117.850 Anthoceros agrestis HOM05D006241 ORTHO05D007842 6.5e-21 103.6 79 54.4
Os06g0725400 Oryza sativa ssp. japonica HOM05D006241 ORTHO05D007842 6.5e-21 103.6 63 71.4
Pp3c21_21340 Physcomitrium patens HOM05D006241 ORTHO05D007842 3.2e-20 101.3 71 63.4
Pp3c18_1920 Physcomitrium patens HOM05D006241 ORTHO05D007842 2.1e-19 98.6 71 60.6
MBI19_g43741_MAGBIO Magnolia biondii HOM05D006241 ORTHO05D007842 1.8e-18 95.5 48 79.2
Mapoly0103s0030 Marchantia polymorpha HOM05D006241 ORTHO05D007842 3.9e-18 94.4 59 61.0
HanXRQChr17g0554651 Helianthus annuus HOM05D006241 ORTHO05D007842 5.1e-18 94.0 51 76.5
Mapoly0108s0047 Marchantia polymorpha HOM05D006241 ORTHO05D007842 5.1e-18 94.0 67 58.2
HanXRQChr17g0555751 Helianthus annuus HOM05D006241 ORTHO05D007842 6.7e-18 93.6 51 76.5
HPP92_021050 Vanilla planifolia HOM05D006241 ORTHO05D007842 1.9e-17 92.0 53 73.6
Hund08526 Selenicereus undatus HOM05D006241 ORTHO05D007842 3.3e-17 91.3 53 75.5
BolC2t09367H Brassica oleracea HOM05D006241 ORTHO05D007842 4.1e-15 84.3 50 72.0
SalBow6G4847 Salvia bowleyana HOM05D006241 ORTHO05D007842 4.5e-14 80.9 52 73.1
Sabra07G0051400 Salix brachista HOM05D006241 ORTHO05D349851 1.2e-11 72.8 51 62.7
vmacro04395 Vaccinium macrocarpon HOM05D006241 ORTHO05D007842 2.1e-11 72.0 33 84.8
ClCG05G015200 Citrullus lanatus HOM05D006241 ORTHO05D007842 3.6e-11 71.2 34 82.4
Nn6g31777 Nelumbo nucifera HOM05D006241 ORTHO05D007842 6.1e-11 70.5 41 70.7
Sed0002381 Sechium edule HOM05D006241 ORTHO05D007842 7.9e-11 70.1 34 79.4
DCAR_013903 Daucus carota HOM05D006241 ORTHO05D007842 3.0e-10 68.2 51 60.8
Medtr4g075160 Medicago truncatula HOM05D006241 ORTHO05D007842 3.9e-10 67.8 38 76.3
AUR62015196 Chenopodium quinoa HOM05D006241 ORTHO05D007842 1.1e-09 66.2 36 72.2
AUR62017658 Chenopodium quinoa HOM05D006241 ORTHO05D007842 1.1e-09 66.2 36 72.2
Ah.01g013010 Amaranthus hybridus HOM05D006241 ORTHO05D007842 2.0e-09 65.5 36 72.2
unitig_746.g26818 Utricularia gibba HOM05D003604 ORTHO05D000209 2.5e-09 65.1 32 78.1
Ah.01g001690 Amaranthus hybridus HOM05D006241 ORTHO05D007842 3.3e-09 64.7 36 69.4
MBI19_g35281_MAGBIO Magnolia biondii HOM05D006241 ORTHO05D007842 3.3e-09 64.7 33 72.7
DCAR_016755 Daucus carota HOM05D006241 ORTHO05D007842 1.4e-07 59.3 32 68.8


User provided reference genes

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