Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G138900 Carya illinoinensis HOM05D005125 ORTHO05D006777 4.5e-258 894.0 441 100.0
CiPaw.08G073000 Carya illinoinensis HOM05D005125 ORTHO05D006777 4.6e-218 761.1 441 85.9
Cfa014076 Carpinus fangiana HOM05D005125 ORTHO05D006777 2.1e-215 752.3 442 84.6
Prupe.1G354500 Prunus persica HOM05D005125 ORTHO05D006777 3.1e-206 721.8 437 81.0
MD08G1002400 Malus domestica HOM05D005125 ORTHO05D006777 2.7e-202 708.8 438 80.1
QL02p014036 Quercus lobata HOM05D005125 ORTHO05D006777 7.8e-202 707.2 427 80.1
MD15G1002000 Malus domestica HOM05D005125 ORTHO05D006777 1.0e-201 706.8 438 79.7
Haze_22773 Corylus avellana HOM05D005125 ORTHO05D006777 5.6e-200 701.0 398 86.4
RcHm_v2.0_Chr6g0304271 Rosa chinensis HOM05D005125 ORTHO05D006777 3.1e-198 695.3 436 79.1
GSVIVG01013360001 Vitis vinifera HOM05D005125 ORTHO05D006777 5.8e-197 691.0 437 77.1
FAN27G2626 Fragaria x ananassa HOM05D005125 ORTHO05D006777 3.2e-195 685.3 435 77.9
FvH4_2g37450 Fragaria vesca HOM05D005125 ORTHO05D006777 5.4e-195 684.5 435 78.6
FAN20G1306 Fragaria x ananassa HOM05D005125 ORTHO05D006777 7.8e-194 680.6 435 77.9
Ca_15433_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 5.1e-193 677.9 437 77.3
Cpa.g.sc26.198 Carica papaya HOM05D005125 ORTHO05D006777 8.7e-193 677.2 444 73.2
Dinv31939 Davidia involucrata HOM05D005125 ORTHO05D006777 2.5e-192 675.6 442 76.5
Duzib093G0577 Durio zibethinus HOM05D005125 ORTHO05D006777 9.6e-192 673.7 437 77.8
TWI56G0714 Tripterygium wilfordii HOM05D005125 ORTHO05D006777 9.6e-192 673.7 406 80.3
Potri.005G250300 Populus trichocarpa HOM05D005125 ORTHO05D006777 1.6e-191 672.9 421 77.0
FAN15G0126 Fragaria x ananassa HOM05D005125 ORTHO05D006777 2.8e-191 672.2 449 75.5
Sabra05G0193900 Salix brachista HOM05D005125 ORTHO05D006777 3.6e-191 671.8 428 76.6
Manes.18G005400 Manihot esculenta HOM05D005125 ORTHO05D006777 4.8e-191 671.4 437 76.9
Ciclev10003241m.g Citrus clementina HOM05D005125 ORTHO05D006777 2.4e-190 669.1 405 79.0
Potri.002G010800 Populus trichocarpa HOM05D005125 ORTHO05D006777 4.0e-190 668.3 434 75.6
Lalb_Chr11g0061631 Lupinus albus HOM05D005125 ORTHO05D006777 9.0e-190 667.2 438 76.5
Medtr3g115290 Medicago truncatula HOM05D005125 ORTHO05D006777 1.2e-189 666.8 441 76.2
Hma1.2p1_0507F.1_g168460 Hydrangea macrophylla HOM05D005125 ORTHO05D006777 1.5e-189 666.4 426 76.1
Thecc.08G058900 Theobroma cacao HOM05D005125 ORTHO05D006777 2.6e-189 665.6 440 76.6
Manes.05G134400 Manihot esculenta HOM05D005125 ORTHO05D006777 3.4e-189 665.2 421 77.9
CSS0022218 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 5.8e-189 664.5 435 75.4
CANSAT25G1708 Cannabis sativa HOM05D005125 ORTHO05D006777 7.6e-189 664.1 442 75.3
ClCG08G009440 Citrullus lanatus HOM05D005125 ORTHO05D006777 7.6e-189 664.1 447 75.6
Gohir.A01G105600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.7e-188 662.9 431 75.4
Gorai.002G117000 Gossypium raimondii HOM05D005125 ORTHO05D006777 2.9e-188 662.1 432 75.7
Glyma.04G017900 Glycine max HOM05D005125 ORTHO05D006777 3.8e-188 661.8 430 77.2
Glyma.06G018200 Glycine max HOM05D005125 ORTHO05D006777 3.8e-188 661.8 430 76.7
Gohir.D01G091900 Gossypium hirsutum HOM05D005125 ORTHO05D006777 8.4e-188 660.6 432 75.5
Phvul.009G010800 Phaseolus vulgaris HOM05D005125 ORTHO05D006777 8.4e-188 660.6 436 76.1
THA.LOC104813172 Tarenaya hassleriana HOM05D005125 ORTHO05D006777 8.4e-188 660.6 425 75.3
TAR625G0173 Trochodendron aralioides HOM05D005125 ORTHO05D006777 8.4e-188 660.6 433 75.1
Duzib116G0840 Durio zibethinus HOM05D005125 ORTHO05D006777 1.9e-187 659.4 433 75.8
MD12G1003300 Malus domestica HOM05D005125 ORTHO05D006777 5.4e-187 657.9 485 70.7
Actinidia37922 Actinidia chinensis HOM05D005125 ORTHO05D006777 2.1e-186 656.0 441 73.0
Atru.chr13.135 Acer truncatum HOM05D005125 ORTHO05D006777 1.3e-185 653.3 408 77.2
Lalb_Chr23g0265791 Lupinus albus HOM05D005125 ORTHO05D006777 1.8e-185 652.9 440 75.0
TPR.G38202 Trifolium pratense HOM05D005125 ORTHO05D006777 2.3e-185 652.5 437 74.6
CsaV3_6G031580 Cucumis sativus L. HOM05D005125 ORTHO05D006777 5.1e-185 651.4 441 73.9
Eucgr.L00923 Eucalyptus grandis HOM05D005125 ORTHO05D006777 2.5e-184 649.0 441 73.0
Lj1g0005535 Lotus japonicus HOM05D005125 ORTHO05D006777 2.5e-184 649.0 437 74.8
arahy.Tifrunner.gnm1.ann1.1X7ZBM Arachis hypogaea HOM05D005125 ORTHO05D006777 5.3e-182 641.3 443 74.7
Rhsim06G0007400 Rhododendron simsii HOM05D005125 ORTHO05D006777 5.3e-182 641.3 437 72.8
Aa31LG9G12440 Aethionema arabicum HOM05D005125 ORTHO05D006777 1.5e-181 639.8 434 72.8
arahy.Tifrunner.gnm1.ann1.VXG7Z6 Arachis hypogaea HOM05D005125 ORTHO05D006777 5.8e-181 637.9 443 74.5
BcaC04g22006 Brassica carinata HOM05D005125 ORTHO05D006777 2.9e-180 635.6 429 72.7
C09p24930 Brassica napus HOM05D005125 ORTHO05D006777 2.9e-180 635.6 429 72.7
A09p19570 Brassica napus HOM05D005125 ORTHO05D006777 6.4e-180 634.4 429 72.7
BraA09t37570Z Brassica rapa HOM05D005125 ORTHO05D006777 1.1e-179 633.6 429 72.7
BcaB07g31085 Brassica carinata HOM05D005125 ORTHO05D006777 1.9e-179 632.9 429 72.5
Cc10_g00670 Coffea canephora HOM05D005125 ORTHO05D006777 1.9e-179 632.9 452 70.1
EL10Ac1g01960 Beta vulgaris HOM05D005125 ORTHO05D006777 2.7e-178 629.0 433 71.1
Solyc04g082340.3 Solanum lycopersicum HOM05D005125 ORTHO05D006777 1.8e-177 626.3 439 70.2
Lj4A11T69 Lonicera japonica HOM05D005125 ORTHO05D006777 2.3e-177 625.9 401 75.8
PSO675G8084 Papaver somniferum HOM05D005125 ORTHO05D006777 2.3e-177 625.9 411 74.9
Sopen04g035960 Solanum pennellii HOM05D005125 ORTHO05D006777 2.3e-177 625.9 439 70.2
CARHR284930 Cardamine hirsuta HOM05D005125 ORTHO05D006777 5.1e-177 624.8 423 71.6
PSO541G3228 Papaver somniferum HOM05D005125 ORTHO05D006777 5.1e-177 624.8 411 74.9
PGR083G1107 Punica granatum HOM05D005125 ORTHO05D006777 1.9e-176 622.9 431 72.4
AL8G19280 Arabidopsis lyrata HOM05D005125 ORTHO05D006777 2.5e-176 622.5 426 71.6
Carub.0008s0686 Capsella rubella HOM05D005125 ORTHO05D006777 4.3e-176 621.7 420 72.6
Sed0024407 Sechium edule HOM05D005125 ORTHO05D006777 4.3e-176 621.7 393 78.1
Aqoxy6G01728 Aquilegia oxysepala HOM05D005125 ORTHO05D006777 5.6e-176 621.3 426 72.1
Duzib041G0467 Durio zibethinus HOM05D005125 ORTHO05D006777 5.6e-176 621.3 441 71.7
AT5G42320 Arabidopsis thaliana HOM05D005125 ORTHO05D006777 1.3e-175 620.2 426 71.6
Sp7g08250 Schrenkiella parvula HOM05D005125 ORTHO05D006777 6.2e-175 617.8 412 73.5
Actinidia28601 Actinidia chinensis HOM05D005125 ORTHO05D006777 1.1e-174 617.1 421 71.5
Rhsim07G0254900 Rhododendron simsii HOM05D005125 ORTHO05D006777 6.9e-174 614.4 389 75.8
PGSC0003DMG400009979 Solanum tuberosum HOM05D005125 ORTHO05D006777 2.0e-173 612.8 409 72.1
Migut.C00961 Erythranthe guttata HOM05D005125 ORTHO05D006777 2.2e-172 609.4 439 67.9
Peaxi162Scf00893g00037 Petunia axillaris HOM05D005125 ORTHO05D006777 2.9e-172 609.0 412 71.6
Ah.00g000800 Amaranthus hybridus HOM05D005125 ORTHO05D006777 6.5e-172 607.8 448 67.6
SalBow7G1095 Salvia bowleyana HOM05D005125 ORTHO05D006777 4.6e-170 601.7 412 70.4
vmacro21811 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 1.8e-169 599.7 481 64.4
Nitab4.5_0000588g0110 Nicotiana tabacum HOM05D005125 ORTHO05D006777 3.9e-169 598.6 426 68.8
EL10Ac7g16836 Beta vulgaris HOM05D005125 ORTHO05D006777 6.7e-169 597.8 431 68.7
AUR62036871 Chenopodium quinoa HOM05D005125 ORTHO05D006777 4.3e-168 595.1 391 72.6
HanXRQChr06g0183991 Helianthus annuus HOM05D005125 ORTHO05D006777 5.7e-168 594.7 398 70.9
Lsat_1_v5_gn_2_5181 Lactuca sativa HOM05D005125 ORTHO05D006777 1.6e-167 593.2 398 71.6
CAN.G311.115 Capsicum annuum HOM05D005125 ORTHO05D006777 2.8e-167 592.4 394 72.6
vmacro04403 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 1.2e-165 587.0 422 69.2
ECA238G0848 Erigeron canadensis HOM05D005125 ORTHO05D006777 1.1e-163 580.5 382 72.8
SGA_v2.0_scaffold108G30863 Striga asiatica HOM05D005125 ORTHO05D006777 2.5e-163 579.3 439 65.8
Ca_15458_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 1.6e-162 576.6 338 81.1
Nn5g30942 Nelumbo nucifera HOM05D005125 ORTHO05D006777 7.9e-162 574.3 385 71.7
VMungo1309G1587 Vigna mungo HOM05D005125 ORTHO05D006777 2.0e-160 569.7 391 72.9
Lsat_1_v5_gn_8_26201 Lactuca sativa HOM05D005125 ORTHO05D006777 1.2e-157 560.5 429 65.0
Hund05112 Selenicereus undatus HOM05D005125 ORTHO05D006777 2.6e-157 559.3 413 68.5
Eucgr.E03516 Eucalyptus grandis HOM05D005125 ORTHO05D006777 6.1e-154 548.1 441 64.9
Thhalv10027780m.g Eutrema salsugineum HOM05D005125 ORTHO05D006777 4.8e-151 538.5 335 77.3
MELO3C026539.2 Cucumis melo HOM05D005125 ORTHO05D006777 7.0e-150 534.6 361 73.7
MBI08_g41521_MAGBIO Magnolia biondii HOM05D005125 ORTHO05D006777 2.7e-146 522.7 401 65.3
unitig_747.g21516 Utricularia gibba HOM05D005125 ORTHO05D006777 1.0e-145 520.8 399 62.7
CSS0019336 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 8.8e-145 517.7 302 80.1
HPP92_007117 Vanilla planifolia HOM05D005125 ORTHO05D006777 1.4e-142 510.4 417 61.9
DCAR_016769 Daucus carota HOM05D005125 ORTHO05D006777 5.3e-142 508.4 398 62.8
Os02g0119300 Oryza sativa ssp. japonica HOM05D005125 ORTHO05D006777 1.2e-138 497.3 392 61.0
Zm00001eb209310 Zea mays HOM05D005125 ORTHO05D006777 1.6e-138 496.9 388 62.4
ATR0661G305 Amborella trichopoda HOM05D005125 ORTHO05D006777 1.4e-137 493.8 389 62.7
Sc15g0004430 Simmondsia chinensis HOM05D005125 ORTHO05D006777 7.5e-136 488.0 338 71.6
CDE05G1644 Ceratophyllum demersum HOM05D005125 ORTHO05D006777 1.1e-134 484.2 401 61.1
Gorai.009G188100 Gossypium raimondii HOM05D005125 ORTHO05D006777 7.7e-133 478.0 320 68.8
Gohir.D05G182800 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.9e-131 473.4 320 67.8
COL.COLO4_06662 Corchorus olitorius HOM05D005125 ORTHO05D006777 8.8e-129 464.5 283 79.9
SHI07997 Sapria himalayana HOM05D005125 ORTHO05D006777 8.8e-129 464.5 429 55.5
Gohir.A05G179600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 7.5e-128 461.5 349 63.6
Dinv05534 Davidia involucrata HOM05D005125 ORTHO05D006777 3.7e-119 432.6 286 76.2
Psat5g159120 Pisum sativum HOM05D005125 ORTHO05D006777 2.0e-112 410.2 283 72.4
AagrBONN_evm.TU.Sc2ySwM_362.2863 Anthoceros agrestis HOM05D005125 ORTHO05D006777 7.3e-107 391.7 338 55.9
Mapoly0045s0063 Marchantia polymorpha HOM05D005125 ORTHO05D006777 1.6e-106 390.6 320 57.5
Pp3c20_16570 Physcomitrium patens HOM05D005125 ORTHO05D006777 3.2e-94 349.7 390 46.2
ECA238G3411 Erigeron canadensis HOM05D005125 ORTHO05D006777 1.7e-92 344.0 207 74.9
SMO358G0159 Selaginella moellendorffii HOM05D005125 ORTHO05D006777 6.6e-92 342.0 279 59.9
BcaNung05255 Brassica carinata HOM05D005125 ORTHO05D006777 1.1e-83 314.7 234 67.9
MD00G1076900 Malus domestica HOM05D005125 ORTHO05D006777 3.2e-78 296.6 230 67.4
SGA_v2.0_scaffold195G40773 Striga asiatica HOM05D005125 ORTHO05D006777 1.1e-75 288.1 204 68.1
Cre11.g467631 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D006777 4.0e-73 279.6 314 44.6
PRCOL_00006814 Prasinoderma coloniale HOM05D005125 ORTHO05D006777 1.3e-68 264.6 246 51.6
BcaNung05254 Brassica carinata HOM05D005125 ORTHO05D006777 2.5e-67 260.4 173 71.7
SEGI_03459 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 1.3e-66 258.1 203 60.6
Oeu056206.2 Olea europaea HOM05D005125 ORTHO05D006777 2.5e-59 233.8 146 76.7
BolC9t55384H Brassica oleracea HOM05D005125 ORTHO05D006777 1.6e-53 214.5 170 66.5
ECA233G3085 Erigeron canadensis HOM05D000006 ORTHO05D000001 7.9e-45 185.7 123 65.9
SEGI_37631 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 1.8e-41 174.5 135 56.3
SGA_v2.0_scaffold83G26467 Striga asiatica HOM05D005125 ORTHO05D006777 3.6e-37 160.2 139 59.7
MCO16G405 Micromonas commoda HOM05D005125 ORTHO05D006777 2.0e-35 154.5 127 52.8
Sc15g0004440 Simmondsia chinensis HOM05D005125 ORTHO05D006777 5.3e-33 146.4 122 59.0
Cc00_g07920 Coffea canephora HOM05D005125 ORTHO05D006777 2.6e-32 144.1 131 60.3
ECA238G2450 Erigeron canadensis HOM05D000240 ORTHO05D002721 1.7e-31 141.4 181 41.4
Oeu035185.1 Olea europaea HOM05D005125 ORTHO05D006777 2.0e-27 127.9 94 70.2
Cre16.g668950 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D034490 5.7e-27 126.3 295 30.5
PRCOL_00005708 Prasinoderma coloniale HOM05D005125 ORTHO05D034490 3.1e-25 120.6 388 26.5
Lsat_1_v5_gn_1_87521 Lactuca sativa HOM05D005125 ORTHO05D007904 5.7e-19 99.8 63 66.7
TPR.G33884 Trifolium pratense HOM05D005125 ORTHO05D006777 1.6e-16 91.7 52 78.8
Cc10_g14360 Coffea canephora HOM05D005125 ORTHO05D006777 7.7e-16 89.4 58 70.7
ECA233G5321 Erigeron canadensis HOM05D000003 ORTHO05D000004 1.7e-10 71.6 65 53.8
C04p25390 Brassica napus HOM05D005125 ORTHO05D041222 4.1e-09 67.0 91 44.0
BolC4t24047H Brassica oleracea HOM05D005125 ORTHO05D041222 4.1e-09 67.0 91 44.0


User provided reference genes

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