Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G137900 Carya illinoinensis HOM05D003937 ORTHO05D004583 4.1e-78 294.7 149 100.0
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 6.0e-37 157.9 181 50.8
Haze_22798 Corylus avellana HOM05D003937 ORTHO05D004583 2.8e-26 122.5 152 47.4
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 3.4e-24 115.5 146 47.3
Haze_22797 Corylus avellana HOM05D003937 ORTHO05D004583 1.0e-20 104.0 147 47.6
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 3.6e-18 95.5 95 53.7
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 4.0e-17 92.0 132 40.9
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 2.0e-16 89.7 115 42.6
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 1.7e-15 86.7 106 47.2
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 2.2e-15 86.3 146 37.7
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 3.8e-15 85.5 162 35.2
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 8.4e-15 84.3 111 45.0
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 8.4e-15 84.3 113 43.4
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 3.2e-14 82.4 96 49.0
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 1.6e-13 80.1 90 46.7
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 1.6e-13 80.1 82 52.4
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 7.9e-13 77.8 146 33.6
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 1.0e-12 77.4 168 35.1
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 1.3e-12 77.0 84 45.2
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 1.8e-12 76.6 162 34.6
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 3.9e-12 75.5 172 33.1
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 5.1e-12 75.1 111 43.2
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 5.1e-12 75.1 95 41.1
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 6.7e-12 74.7 87 44.8
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 6.7e-12 74.7 146 35.6
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 6.7e-12 74.7 92 47.8
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 6.7e-12 74.7 158 34.2
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 3.3e-11 72.4 68 50.0
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 3.3e-11 72.4 128 36.7
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 3.3e-11 72.4 81 51.9
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 7.4e-11 71.2 68 50.0
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 7.4e-11 71.2 79 49.4
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 7.4e-11 71.2 122 35.2
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 7.4e-11 71.2 78 50.0
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 9.6e-11 70.9 69 53.6
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 1.3e-10 70.5 68 50.0
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 1.3e-10 70.5 123 36.6
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 1.6e-10 70.1 113 38.9
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 2.1e-10 69.7 109 42.2
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 2.1e-10 69.7 101 43.6
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 2.1e-10 69.7 111 38.7
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 2.8e-10 69.3 89 48.3
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 2.8e-10 69.3 109 38.5
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 3.7e-10 68.9 70 54.3
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 4.8e-10 68.6 96 40.6
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 4.8e-10 68.6 96 40.6
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 6.2e-10 68.2 96 41.7
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 8.1e-10 67.8 102 44.1
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 8.1e-10 67.8 80 48.8
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 8.1e-10 67.8 87 47.1
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 8.1e-10 67.8 103 39.8
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 1.1e-09 67.4 79 45.6
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.1e-09 67.4 111 36.9
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 1.1e-09 67.4 100 40.0
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 1.1e-09 67.4 100 40.0
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 1.1e-09 67.4 92 43.5
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 1.1e-09 67.4 99 42.4
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.1e-09 67.4 88 45.5
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 1.4e-09 67.0 60 55.0
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.4e-09 67.0 94 42.6
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.4e-09 67.0 92 43.5
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 1.4e-09 67.0 71 50.7
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.4e-09 67.0 84 42.9
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 1.4e-09 67.0 84 42.9
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 1.4e-09 67.0 122 36.9
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 1.4e-09 67.0 114 36.0
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 1.8e-09 66.6 115 37.4
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.8e-09 66.6 115 37.4
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.8e-09 66.6 115 37.4
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 2.4e-09 66.2 113 36.3
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 2.4e-09 66.2 99 42.4
MELO3C026537.2 Cucumis melo HOM05D003937 ORTHO05D004583 2.4e-09 66.2 75 50.7
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 2.4e-09 66.2 111 42.3
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 2.4e-09 66.2 84 41.7
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 2.4e-09 66.2 84 41.7
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 2.4e-09 66.2 68 51.5
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 3.1e-09 65.9 86 41.9
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 3.1e-09 65.9 78 46.2
Carub.0007s0022 Capsella rubella HOM05D003937 ORTHO05D004583 4.0e-09 65.5 69 47.8
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 5.3e-09 65.1 60 53.3
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 5.3e-09 65.1 68 48.5
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 6.9e-09 64.7 80 47.5
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 9.0e-09 64.3 129 35.7
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 9.0e-09 64.3 70 51.4
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 9.0e-09 64.3 70 51.4
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 9.0e-09 64.3 97 40.2
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 9.0e-09 64.3 111 38.7
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 9.0e-09 64.3 110 40.0
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 1.2e-08 63.9 106 35.8
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 1.2e-08 63.9 85 40.0
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 1.2e-08 63.9 147 34.0
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 1.2e-08 63.9 68 47.1
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 1.2e-08 63.9 66 54.5
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 1.2e-08 63.9 127 36.2
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 1.5e-08 63.5 80 45.0
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 1.5e-08 63.5 69 49.3
BolC3t20032H Brassica oleracea HOM05D003937 ORTHO05D004583 2.0e-08 63.2 64 51.6
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 2.0e-08 63.2 91 39.6
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 2.0e-08 63.2 66 47.0
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 2.0e-08 63.2 101 36.6
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 2.6e-08 62.8 134 31.3
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 2.6e-08 62.8 103 39.8
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 2.6e-08 62.8 85 38.8
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 2.6e-08 62.8 67 43.3
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 2.6e-08 62.8 112 35.7
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 3.4e-08 62.4 81 46.9
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 4.5e-08 62.0 109 34.9
C03p77740 Brassica napus HOM05D003937 ORTHO05D004583 5.8e-08 61.6 64 50.0
Cc09_g10730 Coffea canephora HOM05D003937 ORTHO05D004583 5.8e-08 61.6 74 45.9
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 5.8e-08 61.6 101 40.6
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 5.8e-08 61.6 79 41.8
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 9.9e-08 60.8 65 47.7
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 1.7e-07 60.1 109 35.8
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 2.2e-07 59.7 98 34.7
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 2.2e-07 59.7 67 43.3
BcaB03g12256 Brassica carinata HOM05D003937 ORTHO05D004583 2.2e-07 59.7 69 46.4
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 2.2e-07 59.7 90 37.8
BraA08t34322Z Brassica rapa HOM05D003937 ORTHO05D004583 2.9e-07 59.3 71 45.1
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 2.9e-07 59.3 104 35.6
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 3.8e-07 58.9 109 34.9
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 3.8e-07 58.9 109 33.9
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 3.8e-07 58.9 109 33.9
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 4.9e-07 58.5 84 38.1
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 6.4e-07 58.2 120 31.7
A08p23700 Brassica napus HOM05D003937 ORTHO05D004583 8.4e-07 57.8 64 46.9
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 8.4e-07 57.8 61 44.3
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 8.4e-07 57.8 80 42.5
SGA_v2.0_scaffold364G49977 Striga asiatica HOM05D003937 ORTHO05D004583 1.9e-06 56.6 115 34.8
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 2.4e-06 56.2 130 30.8
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 2.4e-06 56.2 129 32.6
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 5.5e-06 55.1 175 26.9
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 5.5e-06 55.1 100 34.0
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 5.5e-06 55.1 101 35.6
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 7.1e-06 54.7 87 39.1


User provided reference genes

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