Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G136700 Carya illinoinensis HOM05D006770 ORTHO05D008356 3.5e-286 987.6 511 100.0
Haze_22817 Corylus avellana HOM05D006770 ORTHO05D008356 2.2e-232 808.9 508 81.7
QL02p014697 Quercus lobata HOM05D006770 ORTHO05D008356 3.4e-217 758.4 513 76.8
Cfa014101 Carpinus fangiana HOM05D006770 ORTHO05D008356 2.4e-202 709.1 399 88.2
Thecc.08G061300 Theobroma cacao HOM05D006770 ORTHO05D008356 3.7e-195 685.3 514 70.0
Duzib041G0267 Durio zibethinus HOM05D006770 ORTHO05D008356 1.6e-190 669.8 508 67.7
Potri.005G252300 Populus trichocarpa HOM05D006770 ORTHO05D008356 5.7e-188 661.4 511 66.9
Atru.chr13.120 Acer truncatum HOM05D006770 ORTHO05D008356 9.7e-188 660.6 506 69.6
TWI79G0343 Tripterygium wilfordii HOM05D006770 ORTHO05D008356 6.3e-187 657.9 512 67.6
RcHm_v2.0_Chr5g0066911 Rosa chinensis HOM05D006770 ORTHO05D008356 2.4e-186 656.0 499 66.1
COL.COLO4_36416 Corchorus olitorius HOM05D006770 ORTHO05D008356 4.1e-186 655.2 517 67.9
MD00G1136800 Malus domestica HOM05D006770 ORTHO05D008356 1.3e-184 650.2 512 65.4
FAN08G2065 Fragaria x ananassa HOM05D006770 ORTHO05D008356 1.7e-184 649.8 486 66.3
Prupe.5G010100 Prunus persica HOM05D006770 ORTHO05D008356 2.9e-184 649.0 490 66.5
CSS0047097 Camellia sinensis var. sinensis HOM05D006770 ORTHO05D008356 6.5e-184 647.9 487 70.4
Manes.05G095800 Manihot esculenta HOM05D006770 ORTHO05D008356 8.5e-184 647.5 514 68.1
Sabra05G0195800 Salix brachista HOM05D006770 ORTHO05D008356 2.5e-183 646.0 511 65.0
Manes.17G081600 Manihot esculenta HOM05D006770 ORTHO05D008356 3.2e-183 645.6 517 66.0
FAN13G3072 Fragaria x ananassa HOM05D006770 ORTHO05D008356 7.2e-183 644.4 486 65.4
FAN18G3713 Fragaria x ananassa HOM05D006770 ORTHO05D008356 1.4e-181 640.2 480 66.2
FvH4_5g25440 Fragaria vesca HOM05D006770 ORTHO05D008356 1.8e-181 639.8 480 66.2
Glyma.07G217000 Glycine max HOM05D006770 ORTHO05D008356 2.3e-181 639.4 492 64.8
Gohir.A11G329900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 4.0e-181 638.6 511 65.0
TAR625G0814 Trochodendron aralioides HOM05D006770 ORTHO05D008356 6.8e-181 637.9 521 64.5
Gorai.006G274800 Gossypium raimondii HOM05D006770 ORTHO05D008356 4.8e-179 631.7 511 64.2
Phvul.001G002700 Phaseolus vulgaris HOM05D006770 ORTHO05D008356 8.3e-179 630.9 510 63.3
VMungo0251G0866 Vigna mungo HOM05D006770 ORTHO05D008356 1.4e-178 630.2 483 65.2
Glyma.20G013900 Glycine max HOM05D006770 ORTHO05D008356 2.4e-178 629.4 498 64.5
Gorai.004G294200 Gossypium raimondii HOM05D006770 ORTHO05D008356 5.4e-178 628.2 514 63.4
Nn5g30983 Nelumbo nucifera HOM05D006770 ORTHO05D008356 1.2e-177 627.1 481 67.2
Ciclev10000935m.g Citrus clementina HOM05D006770 ORTHO05D008356 3.5e-177 625.5 520 64.2
PSO541G3292 Papaver somniferum HOM05D006770 ORTHO05D008356 1.1e-175 620.5 484 64.3
Lalb_Chr05g0219451 Lupinus albus HOM05D006770 ORTHO05D008356 1.5e-175 620.2 475 66.3
CANSAT64G1545 Cannabis sativa HOM05D006770 ORTHO05D008356 4.2e-175 618.6 510 63.1
Medtr4g084940 Medicago truncatula HOM05D006770 ORTHO05D008356 1.5e-172 610.1 497 62.6
PSO675G2016 Papaver somniferum HOM05D006770 ORTHO05D008356 4.4e-172 608.6 484 62.8
Ca_25485_v3 Cicer arietinum L. HOM05D006770 ORTHO05D008356 1.7e-171 606.7 504 61.9
EL10Ac1g01921 Beta vulgaris HOM05D006770 ORTHO05D008356 3.7e-171 605.5 470 65.5
AUR62040821 Chenopodium quinoa HOM05D006770 ORTHO05D008356 6.3e-171 604.7 472 64.6
Sc02g0009170 Simmondsia chinensis HOM05D006770 ORTHO05D008356 8.3e-171 604.4 494 64.2
CsaV3_1G014370 Cucumis sativus L. HOM05D006770 ORTHO05D008356 1.8e-170 603.2 474 65.6
Gohir.D08G007000 Gossypium hirsutum HOM05D006770 ORTHO05D008356 3.1e-170 602.4 486 64.6
THA.LOC104813750 Tarenaya hassleriana HOM05D006770 ORTHO05D008356 5.4e-170 601.7 473 64.1
Rhsim13G0054100 Rhododendron simsii HOM05D006770 ORTHO05D008356 2.7e-169 599.4 491 64.4
Oeu032124.1 Olea europaea HOM05D006770 ORTHO05D008356 5.9e-169 598.2 499 64.3
Gohir.A01G231900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 2.9e-168 595.9 509 62.3
Gohir.D08G275542 Gossypium hirsutum HOM05D006770 ORTHO05D008356 2.5e-167 592.8 397 72.0
Gohir.A13G000201 Gossypium hirsutum HOM05D006770 ORTHO05D008356 3.3e-167 592.4 397 72.0
TPR.G35412 Trifolium pratense HOM05D006770 ORTHO05D008356 3.3e-167 592.4 488 61.5
Gorai.009G456100 Gossypium raimondii HOM05D006770 ORTHO05D008356 4.3e-167 592.0 511 61.3
AUR62035131 Chenopodium quinoa HOM05D006770 ORTHO05D008356 5.6e-167 591.7 470 64.0
MELO3C004826.2 Cucumis melo HOM05D006770 ORTHO05D008356 1.0e-165 587.4 474 64.3
Lj4g0024175 Lotus japonicus HOM05D006770 ORTHO05D008356 4.0e-165 585.5 456 64.7
PGSC0003DMG400021117 Solanum tuberosum HOM05D006770 ORTHO05D008356 2.0e-164 583.2 481 62.4
Aqoxy6G01625 Aquilegia oxysepala HOM05D006770 ORTHO05D008356 3.4e-164 582.4 479 63.9
Sopen02g019170 Solanum pennellii HOM05D006770 ORTHO05D008356 3.4e-164 582.4 481 62.6
Hund01783 Selenicereus undatus HOM05D006770 ORTHO05D008356 5.7e-164 581.6 474 62.7
PGR031G0937 Punica granatum HOM05D006770 ORTHO05D008356 1.3e-163 580.5 472 64.2
Solyc02g070010.1 Solanum lycopersicum HOM05D006770 ORTHO05D008356 4.9e-163 578.6 466 63.3
Sc02g0009150 Simmondsia chinensis HOM05D006770 ORTHO05D008356 8.3e-163 577.8 470 62.8
Aa31LG2G8050 Aethionema arabicum HOM05D006770 ORTHO05D008356 7.0e-162 574.7 487 60.0
Psat7g128200 Pisum sativum HOM05D006770 ORTHO05D008356 9.2e-162 574.3 478 61.5
Nitab4.5_0001225g0180 Nicotiana tabacum HOM05D006770 ORTHO05D008356 2.0e-161 573.2 491 61.7
Nitab4.5_0001583g0140 Nicotiana tabacum HOM05D006770 ORTHO05D008356 2.3e-160 569.7 466 63.9
CAN.G79.22 Capsicum annuum HOM05D006770 ORTHO05D008356 3.9e-160 568.9 461 63.1
ECA246G3919 Erigeron canadensis HOM05D006770 ORTHO05D008356 6.6e-160 568.2 483 61.9
CAN.G79.18 Capsicum annuum HOM05D006770 ORTHO05D008356 1.5e-159 567.0 461 62.9
Atru.chr13.118 Acer truncatum HOM05D006770 ORTHO05D008356 7.3e-159 564.7 506 62.6
HanXRQChr06g0167391 Helianthus annuus HOM05D006770 ORTHO05D008356 7.3e-159 564.7 484 61.4
Dinv31957 Davidia involucrata HOM05D006770 ORTHO05D008356 9.5e-159 564.3 354 78.2
CDE04G3028 Ceratophyllum demersum HOM05D006770 ORTHO05D008356 4.0e-157 558.9 465 59.8
Cc09_g04530 Coffea canephora HOM05D006770 ORTHO05D008356 2.6e-156 556.2 499 58.9
Lsat_1_v5_gn_3_16821 Lactuca sativa HOM05D006770 ORTHO05D008356 4.9e-155 552.0 397 67.3
Ah.00g000990 Amaranthus hybridus HOM05D006770 ORTHO05D008356 9.2e-154 547.7 471 61.1
Thhalv10004104m.g Eutrema salsugineum HOM05D006770 ORTHO05D008356 1.2e-153 547.4 485 59.8
SalBow7G3490 Salvia bowleyana HOM05D006770 ORTHO05D008356 1.7e-152 543.5 472 59.5
DCAR_024417 Daucus carota HOM05D006770 ORTHO05D008356 5.0e-152 542.0 476 60.9
Gorai.007G379700 Gossypium raimondii HOM05D006770 ORTHO05D008356 6.2e-150 535.0 452 62.6
Migut.M00215 Erythranthe guttata HOM05D006770 ORTHO05D008356 2.3e-149 533.1 501 55.9
Sp2g13280 Schrenkiella parvula HOM05D006770 ORTHO05D008356 3.4e-148 529.3 475 58.5
AL5G10970 Arabidopsis lyrata HOM05D006770 ORTHO05D008356 7.5e-148 528.1 494 56.9
BcaC06g31269 Brassica carinata HOM05D006770 ORTHO05D008356 6.4e-147 525.0 475 58.5
AT2G01860 Arabidopsis thaliana HOM05D006770 ORTHO05D008356 5.4e-146 521.9 483 57.3
CARHR144420 Cardamine hirsuta HOM05D006770 ORTHO05D008356 1.0e-144 517.7 464 58.8
BolC7t43787H Brassica oleracea HOM05D006770 ORTHO05D008356 1.7e-144 516.9 495 56.4
Actinidia23351 Actinidia chinensis HOM05D006770 ORTHO05D008356 2.3e-144 516.5 452 64.4
Carub.0005s0082 Capsella rubella HOM05D006770 ORTHO05D008356 2.3e-144 516.5 482 57.1
C07p32660 Brassica napus HOM05D006770 ORTHO05D008356 5.1e-144 515.4 495 56.6
BcaC06g34103 Brassica carinata HOM05D006770 ORTHO05D008356 1.5e-143 513.8 473 58.1
Peaxi162Scf00670g00024 Petunia axillaris HOM05D006770 ORTHO05D008356 1.5e-143 513.8 391 66.0
A06p43970 Brassica napus HOM05D006770 ORTHO05D008356 1.2e-142 510.8 495 56.4
BraA06t27272Z Brassica rapa HOM05D006770 ORTHO05D008356 3.8e-139 499.2 495 55.4
HPP92_007114 Vanilla planifolia HOM05D006770 ORTHO05D008356 1.9e-135 486.9 468 55.3
vmacro02830 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 7.3e-135 485.0 341 69.8
ATR0807G062 Amborella trichopoda HOM05D006770 ORTHO05D008356 1.9e-127 460.3 512 50.6
MD16G1284100 Malus domestica HOM05D006770 ORTHO05D008356 1.1e-125 454.5 451 56.1
Lj9P204T39 Lonicera japonica HOM05D006770 ORTHO05D008356 4.3e-119 432.6 320 67.8
Zm00001eb391890 Zea mays HOM05D006770 ORTHO05D008356 4.5e-116 422.5 403 55.1
SGA_v2.0_scaffold538G52786 Striga asiatica HOM05D006770 ORTHO05D008356 9.9e-116 421.4 384 56.8
SGA_v2.0_scaffold476G52129 Striga asiatica HOM05D006770 ORTHO05D008356 1.4e-114 417.5 384 56.8
Os02g0118000 Oryza sativa ssp. japonica HOM05D006770 ORTHO05D008356 5.1e-112 409.1 395 54.2
SEGI_37300 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 8.2e-110 401.7 380 52.6
Sed0018053 Sechium edule HOM05D006770 ORTHO05D008356 1.8e-104 384.0 361 57.9
Gohir.D11G349500 Gossypium hirsutum HOM05D006770 ORTHO05D008356 2.3e-88 330.5 219 72.1
Actinidia12910 Actinidia chinensis HOM05D006770 ORTHO05D008356 3.1e-77 293.5 338 52.1
Gohir.A06G000350 Gossypium hirsutum HOM05D006770 ORTHO05D008356 4.2e-74 283.1 192 71.4
SEGI_07142 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 6.1e-73 279.3 380 40.8
ClCG01G012950 Citrullus lanatus HOM05D006770 ORTHO05D008356 5.5e-66 256.1 186 69.9
CAN.G733.12 Capsicum annuum HOM05D006770 ORTHO05D008356 2.9e-46 190.7 212 50.0
AagrBONN_evm.TU.Sc2ySwM_117.3058 Anthoceros agrestis HOM05D006770 ORTHO05D008356 2.9e-38 164.1 314 33.1
Gohir.D02G000400 Gossypium hirsutum HOM05D006770 ORTHO05D008356 6.6e-35 152.9 194 49.0
VMungo0720G0800 Vigna mungo HOM05D006770 ORTHO05D008356 2.8e-33 147.5 123 59.3
CAN.G332.6 Capsicum annuum HOM05D006770 ORTHO05D008356 1.4e-29 135.2 106 61.3
VMungo0331G1801 Vigna mungo HOM05D002295 ORTHO05D008356 5.2e-24 116.7 89 64.0
CBR_g51330 Chara braunii HOM05D009772 ORTHO05D000353 8.7e-19 99.4 326 23.9
Mapoly0166s0014 Marchantia polymorpha HOM05D006770 ORTHO05D008356 1.9e-18 98.2 241 29.5
vmacro02831 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 2.2e-14 84.7 132 48.5
TAR381G0468 Trochodendron aralioides HOM05D006770 ORTHO05D008356 2.3e-11 74.7 92 50.0
HPP92_006127 Vanilla planifolia HOM05D002479 ORTHO05D002675 3.9e-11 73.9 136 30.1
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 5.6e-10 70.1 127 30.7
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 9.6e-10 69.3 127 30.7
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 2.1e-09 68.2 121 30.6
Carub.0006s2350 Capsella rubella HOM05D003689 ORTHO05D003950 3.6e-09 67.4 127 29.9
Lsat_1_v5_gn_1_52140 Lactuca sativa HOM05D004824 ORTHO05D003903 4.8e-09 67.0 179 27.9
Medtr1g008310 Medicago truncatula HOM05D003689 ORTHO05D003950 3.1e-08 64.3 117 29.1
arahy.Tifrunner.gnm1.ann1.BYDN2S Arachis hypogaea HOM05D007322 ORTHO05D009029 4.0e-08 63.9 222 22.5
arahy.Tifrunner.gnm1.ann1.YY4I9I Arachis hypogaea HOM05D007322 ORTHO05D009029 4.0e-08 63.9 222 22.5
ATR0315G024 Amborella trichopoda HOM05D003689 ORTHO05D003950 2.0e-07 61.6 104 32.7
Aqoxy1G01011 Aquilegia oxysepala HOM05D003900 ORTHO05D016547 3.4e-07 60.8 102 29.4
Cc04_g11460 Coffea canephora HOM05D002460 ORTHO05D002716 1.3e-06 58.9 160 22.5
Potri.009G092100 Populus trichocarpa HOM05D003056 ORTHO05D003422 1.7e-06 58.5 165 29.1
SGA_v2.0_scaffold9G05037 Striga asiatica HOM05D003177 ORTHO05D003481 1.7e-06 58.5 152 25.0
MD15G1423900 Malus domestica HOM05D007322 ORTHO05D009029 2.2e-06 58.2 155 27.1
DCAR_017247 Daucus carota HOM05D000891 ORTHO05D000761 3.8e-06 57.4 151 26.5
Hma1.2p1_0969F.1_g242592 Hydrangea macrophylla HOM05D006596 ORTHO05D008497 6.4e-06 56.6 143 23.8
Lj2A685T11 Lonicera japonica HOM05D005862 ORTHO05D007731 6.4e-06 56.6 161 24.8
Rhsim12G0149500 Rhododendron simsii HOM05D005362 ORTHO05D006895 6.4e-06 56.6 158 25.9
Rhsim12G0149700 Rhododendron simsii HOM05D005362 ORTHO05D006895 6.4e-06 56.6 158 25.9


User provided reference genes

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