Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G136100 Carya illinoinensis HOM05D006640 ORTHO05D008078 1.1e-105 386.7 199 100.0
QL02p015123 Quercus lobata HOM05D006640 ORTHO05D008078 6.9e-89 330.9 198 83.8
Haze_19181 Corylus avellana HOM05D006640 ORTHO05D008078 3.5e-85 318.5 199 80.9
GSVIVG01013394001 Vitis vinifera HOM05D006640 ORTHO05D008078 2.2e-79 299.3 199 77.9
Cfa010319 Carpinus fangiana HOM05D006640 ORTHO05D008078 8.4e-79 297.4 184 81.0
Cfa020797 Carpinus fangiana HOM05D006640 ORTHO05D008078 8.4e-79 297.4 184 81.5
CSS0000785 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 3.5e-77 292.0 199 74.9
Eucgr.F01788 Eucalyptus grandis HOM05D006640 ORTHO05D008078 1.3e-76 290.0 199 73.4
TAR625G0363 Trochodendron aralioides HOM05D006640 ORTHO05D008078 1.4e-73 280.0 199 71.4
Manes.13G069100 Manihot esculenta HOM05D006640 ORTHO05D008078 2.4e-73 279.3 199 70.9
Atru.chr3.582 Acer truncatum HOM05D006640 ORTHO05D008078 3.1e-73 278.9 199 70.4
Ciclev10002549m.g Citrus clementina HOM05D006640 ORTHO05D008078 3.1e-73 278.9 199 70.9
MD15G1440200 Malus domestica HOM05D006640 ORTHO05D008078 4.1e-73 278.5 200 74.0
Prupe.5G009200 Prunus persica HOM05D006640 ORTHO05D008078 1.5e-72 276.6 200 74.5
Lj6g0027905 Lotus japonicus HOM05D006640 ORTHO05D008078 7.6e-72 274.2 197 69.0
FAN18G3620 Fragaria x ananassa HOM05D006640 ORTHO05D008078 1.3e-71 273.5 200 72.5
FvH4_5g25620 Fragaria vesca HOM05D006640 ORTHO05D008078 2.2e-71 272.7 200 72.5
FAN04G1358 Fragaria x ananassa HOM05D006640 ORTHO05D008078 3.8e-71 271.9 200 72.0
Lalb_Chr01g0007731 Lupinus albus HOM05D006640 ORTHO05D008078 8.5e-71 270.8 197 67.5
EL10Ac3g05131 Beta vulgaris HOM05D006640 ORTHO05D008078 3.2e-70 268.9 199 68.8
RcHm_v2.0_Chr7g0215911 Rosa chinensis HOM05D006640 ORTHO05D008078 4.2e-70 268.5 200 71.5
Potri.005G253200 Populus trichocarpa HOM05D006640 ORTHO05D008078 9.3e-70 267.3 201 67.7
Sopen04g036190 Solanum pennellii HOM05D006640 ORTHO05D008078 3.6e-69 265.4 200 67.0
Migut.E01492 Erythranthe guttata HOM05D006640 ORTHO05D008078 4.6e-69 265.0 198 67.7
CAN.G1138.9 Capsicum annuum HOM05D006640 ORTHO05D008078 6.1e-69 264.6 200 68.5
vmacro05542 Vaccinium macrocarpon HOM05D006640 ORTHO05D008078 1.0e-68 263.8 191 70.2
Cc10_g14910 Coffea canephora HOM05D006640 ORTHO05D008078 1.3e-68 263.5 198 68.7
Thecc.03G029100 Theobroma cacao HOM05D006640 ORTHO05D008078 1.8e-68 263.1 199 66.3
Solyc04g082560.4 Solanum lycopersicum HOM05D001842 ORTHO05D001849 3.0e-68 262.3 200 66.5
Solyc08g069130.1 Solanum lycopersicum HOM05D006640 ORTHO05D008078 3.0e-68 262.3 200 66.5
MSTRG.990 Avicennia marina HOM05D006640 ORTHO05D008078 1.5e-67 260.0 198 68.7
Psat7g226480 Pisum sativum HOM05D006640 ORTHO05D008078 1.5e-67 260.0 200 66.5
Medtr1g103240 Medicago truncatula HOM05D006640 ORTHO05D008078 7.4e-67 257.7 199 65.3
Gorai.006G062900 Gossypium raimondii HOM05D006640 ORTHO05D008078 2.2e-66 256.1 205 62.0
Medtr4g032370 Medicago truncatula HOM05D006640 ORTHO05D008078 3.7e-66 255.4 198 65.7
Ca_19713_v3 Cicer arietinum L. HOM05D006640 ORTHO05D008078 6.3e-66 254.6 238 56.3
TPR.G34155 Trifolium pratense HOM05D006640 ORTHO05D008078 1.4e-65 253.4 200 64.0
Glyma.08G337400 Glycine max HOM05D001876 ORTHO05D002002 2.4e-65 252.7 197 63.5
Oeu011315.3 Olea europaea HOM05D006640 ORTHO05D008078 1.5e-64 250.0 207 63.8
Hund21079 Selenicereus undatus HOM05D006640 ORTHO05D008078 2.6e-64 249.2 199 65.8
ClCG02G003390 Citrullus lanatus HOM05D006640 ORTHO05D008078 4.5e-64 248.4 199 64.8
Peaxi162Scf00680g00119 Petunia axillaris HOM05D006640 ORTHO05D008078 7.7e-64 247.7 200 62.5
MELO3C013247.2 Cucumis melo HOM05D006640 ORTHO05D008078 1.3e-63 246.9 199 65.3
Gohir.A09G046800 Gossypium hirsutum HOM05D006640 ORTHO05D008078 1.3e-63 246.9 205 59.5
FAN08G2005 Fragaria x ananassa HOM05D006640 ORTHO05D008078 2.9e-63 245.7 185 70.3
SalBow1G3286 Salvia bowleyana HOM05D006640 ORTHO05D008078 5.0e-63 245.0 198 63.1
HanXRQChr05g0147651 Helianthus annuus HOM05D006640 ORTHO05D008078 6.5e-63 244.6 199 61.3
CsaV3_7G001930 Cucumis sativus L. HOM05D006640 ORTHO05D008078 1.1e-62 243.8 199 64.3
Glyma.08G337600 Glycine max HOM05D003402 ORTHO05D003939 3.2e-62 242.3 184 65.2
SalBow7G4342 Salvia bowleyana HOM05D006640 ORTHO05D008078 3.2e-62 242.3 198 62.6
PGR083G0938 Punica granatum HOM05D006640 ORTHO05D008078 4.2e-62 241.9 199 62.3
CSS0036253 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 7.2e-62 241.1 206 63.6
SGA_v2.0_scaffold184G39969 Striga asiatica HOM05D006640 ORTHO05D008078 7.2e-62 241.1 200 64.0
CSS0028139 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 1.6e-61 240.0 199 64.3
HanXRQChr02g0057271 Helianthus annuus HOM05D006640 ORTHO05D008078 2.1e-61 239.6 199 60.3
Duzib205G0266 Durio zibethinus HOM05D006640 ORTHO05D008078 4.6e-61 238.4 187 63.6
Aqoxy6G01598 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 6.1e-61 238.0 196 63.3
Dinv27390 Davidia involucrata HOM05D006640 ORTHO05D008078 6.1e-61 238.0 167 73.7
CANSAT54G1336 Cannabis sativa HOM05D006640 ORTHO05D008078 7.9e-61 237.7 196 60.7
ECA232G3411 Erigeron canadensis HOM05D006640 ORTHO05D008078 7.9e-61 237.7 199 60.8
Aa31LG9G12490 Aethionema arabicum HOM05D006640 ORTHO05D008078 3.9e-60 235.3 196 57.7
COL.COLO4_22727 Corchorus olitorius HOM05D006640 ORTHO05D008078 3.9e-60 235.3 185 64.3
Cpa.g.sc26.165 Carica papaya HOM05D006640 ORTHO05D008078 6.7e-60 234.6 184 65.2
Hma1.2p1_0612F.1_g188900 Hydrangea macrophylla HOM05D006640 ORTHO05D008078 1.1e-59 233.8 155 74.2
COL.COLO4_07395 Corchorus olitorius HOM05D006640 ORTHO05D008078 3.3e-59 232.3 201 62.2
Rhsim08G0078300 Rhododendron simsii HOM05D006640 ORTHO05D008078 3.3e-59 232.3 184 65.8
ATR0807G089 Amborella trichopoda HOM05D006640 ORTHO05D008078 2.8e-58 229.2 197 57.4
Thhalv10003275m.g Eutrema salsugineum HOM05D006640 ORTHO05D008078 2.8e-58 229.2 197 58.4
MBI06_g19633_MAGBIO Magnolia biondii HOM05D006640 ORTHO05D008078 4.8e-58 228.4 181 63.5
Carub.0008s0481 Capsella rubella HOM05D006640 ORTHO05D008078 6.3e-58 228.0 197 57.9
CARHR179670 Cardamine hirsuta HOM05D006640 ORTHO05D008078 8.2e-58 227.6 197 59.4
AT5G43822 Arabidopsis thaliana HOM05D006640 ORTHO05D008078 1.4e-57 226.9 197 58.9
CDE02G0900 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 1.4e-57 226.9 197 56.9
BcaC06g34624 Brassica carinata HOM05D006640 ORTHO05D008078 2.4e-57 226.1 197 56.3
FAN13G1910 Fragaria x ananassa HOM05D006640 ORTHO05D008078 3.1e-57 225.7 232 56.5
DCAR_013930 Daucus carota HOM05D006640 ORTHO05D008078 4.1e-57 225.3 206 57.8
SalBow6G0872 Salvia bowleyana HOM05D006640 ORTHO05D008078 6.9e-57 224.6 190 63.2
AL8G16350 Arabidopsis lyrata HOM05D006640 ORTHO05D008078 9.1e-57 224.2 197 56.9
BcaC06g31675 Brassica carinata HOM05D006640 ORTHO05D008078 1.5e-56 223.4 197 55.3
Phvul.008G111000 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 2.0e-56 223.0 184 60.9
THA.LOC104820569 Tarenaya hassleriana HOM05D006640 ORTHO05D008078 4.5e-56 221.9 197 58.4
BraA06t27635Z Brassica rapa HOM05D006640 ORTHO05D008078 5.9e-56 221.5 197 54.8
Os10g0566900 Oryza sativa ssp. japonica HOM05D006640 ORTHO05D008078 6.5e-55 218.0 199 55.8
PSO541G3394 Papaver somniferum HOM05D006640 ORTHO05D008078 1.2e-53 213.8 200 58.5
MD08G1245100 Malus domestica HOM05D006640 ORTHO05D008078 3.6e-53 212.2 163 69.9
PSO675G3428 Papaver somniferum HOM05D006640 ORTHO05D008078 3.6e-53 212.2 200 58.0
AUR62005948 Chenopodium quinoa HOM05D006640 ORTHO05D008078 1.4e-52 210.3 184 59.2
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 4.1e-49 198.7 248 47.6
Lsat_1_v5_gn_9_28760 Lactuca sativa HOM05D006640 ORTHO05D008078 3.5e-48 195.7 184 53.8
Lsat_1_v5_gn_0_27580 Lactuca sativa HOM05D006640 ORTHO05D008078 2.9e-47 192.6 199 50.8
Nn5g31001 Nelumbo nucifera HOM05D006640 ORTHO05D008078 1.5e-46 190.3 146 67.8
Sp2g08620 Schrenkiella parvula HOM05D006218 ORTHO05D007338 1.9e-46 189.9 194 49.5
unitig_46.g18025 Utricularia gibba HOM05D006640 ORTHO05D008078 4.0e-44 182.2 204 49.0
AUR62028117 Chenopodium quinoa HOM05D006640 ORTHO05D008078 5.7e-43 178.3 176 54.5
VMungo0540G0999 Vigna mungo HOM05D006640 ORTHO05D008078 3.7e-42 175.6 145 60.0
Sabra05G0196400 Salix brachista HOM05D006640 ORTHO05D008078 8.2e-42 174.5 186 52.2
Phvul.006G070300 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 9.1e-41 171.0 137 62.8
Mapoly0033s0101 Marchantia polymorpha HOM05D006640 ORTHO05D008078 3.5e-40 169.1 192 45.8
SHI14582 Sapria himalayana HOM05D006640 ORTHO05D008078 3.5e-40 169.1 162 54.3
HPP92_007449 Vanilla planifolia HOM05D006640 ORTHO05D008078 3.5e-40 169.1 185 51.9
Sed0007887 Sechium edule HOM05D006640 ORTHO05D008078 1.8e-36 156.8 146 57.5
Aqoxy2G03352 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 5.7e-35 151.8 127 61.4
Sc24g0000300 Simmondsia chinensis HOM05D006640 ORTHO05D008078 9.8e-35 151.0 115 66.1
Zm00001eb327920 Zea mays HOM05D006640 ORTHO05D008078 9.8e-35 151.0 156 46.2
Pp3c20_21140 Physcomitrium patens HOM05D000227 ORTHO05D008078 2.8e-34 149.4 184 45.7
Cfa015562 Carpinus fangiana HOM05D006640 ORTHO05D008078 1.2e-32 144.1 184 40.8
Nitab4.5_0001208g0130 Nicotiana tabacum HOM05D006640 ORTHO05D008078 1.6e-32 143.7 117 65.8
CSS0011114 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 2.0e-32 143.3 144 54.2
Lj4C809G7 Lonicera japonica HOM05D006640 ORTHO05D008078 4.2e-30 135.6 145 46.9
Gohir.D09G047201 Gossypium hirsutum HOM05D006640 ORTHO05D008078 9.5e-30 134.4 110 57.3
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 2.3e-28 129.8 84 76.2
Nitab4.5_0000383g0410 Nicotiana tabacum HOM05D006640 ORTHO05D008078 9.8e-27 124.4 101 66.3
Nitab4.5_0010095g0020 Nicotiana tabacum HOM05D006640 ORTHO05D008078 1.8e-25 120.2 87 70.1
RcHm_v2.0_Chr3g0481381 Rosa chinensis HOM05D006640 ORTHO05D008078 7.0e-25 118.2 107 57.0
CBR_g30123 Chara braunii HOM05D006640 ORTHO05D008078 2.9e-23 112.8 190 34.7
AagrBONN_evm.TU.Sc2ySwM_362.2824 Anthoceros agrestis HOM05D006640 ORTHO05D008078 1.9e-22 110.2 154 40.3
RcHm_v2.0_Chr3g0481391 Rosa chinensis HOM05D006640 ORTHO05D008078 5.6e-22 108.6 100 62.0
Duzib205G1379 Durio zibethinus HOM05D006640 ORTHO05D008078 7.3e-22 108.2 113 51.3
Peaxi162Scf00139g00094 Petunia axillaris HOM05D006640 ORTHO05D008078 1.0e-20 104.4 80 61.2
Atru.chr3.42 Acer truncatum HOM05D006640 ORTHO05D008078 3.5e-16 89.4 61 63.9
CDE04G0756 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 3.9e-15 85.9 110 42.7
Aqoxy2G03351 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 1.5e-11 73.9 57 68.4
MD08G1245200 Malus domestica HOM05D006640 ORTHO05D008078 5.8e-11 72.0 38 94.7
vmacro03672 Vaccinium macrocarpon HOM05D002991 ORTHO05D003480 1.1e-09 67.8 45 66.7
Phvul.006G060400 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 1.4e-09 67.4 45 68.9
FvH4_6g22960 Fragaria vesca HOM05D006640 ORTHO05D008078 1.2e-08 64.3 76 50.0


User provided reference genes

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