Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G134700 Carya illinoinensis HOM05D005712 ORTHO05D007865 1.2e-200 703.0 356 100.0
Cfa014126 Carpinus fangiana HOM05D005712 ORTHO05D007865 1.1e-153 547.0 359 78.0
Haze_22847 Corylus avellana HOM05D005712 ORTHO05D007865 4.0e-148 528.5 402 69.7
QL02p015343 Quercus lobata HOM05D005712 ORTHO05D007865 3.2e-137 492.3 360 73.1
COL.COLO4_07687 Corchorus olitorius HOM05D005712 ORTHO05D007865 7.4e-126 454.5 359 67.1
Dinv31977 Davidia involucrata HOM05D005712 ORTHO05D007865 1.7e-122 443.4 355 65.6
Duzib116G0237 Durio zibethinus HOM05D005712 ORTHO05D007865 1.8e-119 433.3 357 66.9
Thecc.08G064200 Theobroma cacao HOM05D005712 ORTHO05D007865 2.5e-118 429.5 363 63.1
Potri.005G255300 Populus trichocarpa HOM05D005712 ORTHO05D007865 5.7e-118 428.3 377 63.4
Ciclev10001686m.g Citrus clementina HOM05D005712 ORTHO05D007865 7.4e-118 427.9 355 63.9
Manes.05G126100 Manihot esculenta HOM05D005712 ORTHO05D007865 7.4e-118 427.9 356 64.6
Sabra05G0197900 Salix brachista HOM05D005712 ORTHO05D007865 1.3e-117 427.2 377 60.5
Sed0012463 Sechium edule HOM05D005712 ORTHO05D007865 1.8e-116 423.3 364 63.5
Actinidia15518 Actinidia chinensis HOM05D005712 ORTHO05D007865 3.1e-116 422.5 358 63.4
Actinidia17068 Actinidia chinensis HOM05D005712 ORTHO05D007865 9.0e-116 421.0 355 63.7
TAR625G0170 Trochodendron aralioides HOM05D005712 ORTHO05D007865 1.1e-113 414.1 331 66.2
Cpa.g.sc26.149 Carica papaya HOM05D005712 ORTHO05D007865 1.4e-113 413.7 360 62.5
Atru.chr13.78 Acer truncatum HOM05D005712 ORTHO05D007865 1.9e-113 413.3 265 79.6
CSS0017080 Camellia sinensis var. sinensis HOM05D005712 ORTHO05D007865 1.9e-113 413.3 361 63.2
TAR381G1666 Trochodendron aralioides HOM05D005712 ORTHO05D007865 1.2e-112 410.6 345 64.6
CsaV3_4G037540 Cucumis sativus L. HOM05D005712 ORTHO05D007865 1.6e-112 410.2 365 61.9
Potri.002G006300 Populus trichocarpa HOM05D005712 ORTHO05D007865 1.6e-112 410.2 376 61.2
MELO3C017048.2 Cucumis melo HOM05D005712 ORTHO05D007865 1.0e-111 407.5 363 60.9
Gohir.A05G177700 Gossypium hirsutum HOM05D005712 ORTHO05D007865 1.4e-111 407.1 308 69.2
Rhsim06G0004000 Rhododendron simsii HOM05D005712 ORTHO05D007865 3.9e-111 405.6 360 62.5
TWI12G0719 Tripterygium wilfordii HOM05D005712 ORTHO05D007865 2.0e-110 403.3 354 62.7
GSVIVG01013413001 Vitis vinifera HOM05D005712 ORTHO05D007865 9.7e-110 401.0 344 64.0
Gohir.D05G181100 Gossypium hirsutum HOM05D005712 ORTHO05D007865 1.3e-109 400.6 308 68.2
Gorai.009G186100 Gossypium raimondii HOM05D005712 ORTHO05D007865 6.3e-109 398.3 308 67.9
Nn5g31025 Nelumbo nucifera HOM05D005712 ORTHO05D007865 2.0e-107 393.3 357 60.2
TWI56G0384 Tripterygium wilfordii HOM05D005712 ORTHO05D007865 4.5e-107 392.1 355 61.7
ClCG11G018940 Citrullus lanatus HOM05D005712 ORTHO05D007865 1.3e-106 390.6 363 59.8
MD06G1005200 Malus domestica HOM05D005712 ORTHO05D007865 2.5e-105 386.3 360 58.9
vmacro21777 Vaccinium macrocarpon HOM05D005712 ORTHO05D007865 3.2e-105 386.0 352 58.8
Hund05083 Selenicereus undatus HOM05D005712 ORTHO05D007865 6.7e-103 378.3 333 59.2
RcHm_v2.0_Chr7g0216471 Rosa chinensis HOM05D005712 ORTHO05D007865 1.5e-102 377.1 361 58.2
AUR62024105 Chenopodium quinoa HOM05D005712 ORTHO05D007865 3.3e-102 375.9 306 62.4
Hma1.2p1_0699F.1_g205630 Hydrangea macrophylla HOM05D005712 ORTHO05D007865 5.7e-102 375.2 323 62.8
Nitab4.5_0000486g0150 Nicotiana tabacum HOM05D005712 ORTHO05D007865 5.7e-102 375.2 360 58.3
FAN18G0352 Fragaria x ananassa HOM05D005712 ORTHO05D007865 9.7e-102 374.4 338 59.5
Nitab4.5_0004637g0020 Nicotiana tabacum HOM05D005712 ORTHO05D007865 3.7e-101 372.5 283 66.8
FAN08G0897 Fragaria x ananassa HOM05D005712 ORTHO05D007865 6.3e-101 371.7 338 59.5
FAN13G2028 Fragaria x ananassa HOM05D005712 ORTHO05D007865 6.3e-101 371.7 338 59.2
Lj4C5T14 Lonicera japonica HOM05D005712 ORTHO05D007865 1.1e-100 370.9 298 64.4
Ah.00g001120 Amaranthus hybridus HOM05D005712 ORTHO05D007865 1.8e-100 370.2 354 55.9
Prupe.5G006400 Prunus persica HOM05D005712 ORTHO05D007865 1.8e-100 370.2 303 64.7
MSTRG.22087 Avicennia marina HOM05D005712 ORTHO05D007865 5.3e-100 368.6 345 58.3
Eucgr.F03584 Eucalyptus grandis HOM05D005712 ORTHO05D007865 7.0e-100 368.2 342 59.6
FAN04G3045 Fragaria x ananassa HOM05D005712 ORTHO05D007865 7.0e-100 368.2 354 57.3
EL10Ac1g01884 Beta vulgaris HOM05D005712 ORTHO05D007865 2.6e-99 366.3 384 53.4
CAN.G36.16 Capsicum annuum HOM05D005712 ORTHO05D007865 3.5e-99 365.9 299 62.5
PGSC0003DMG400000968 Solanum tuberosum HOM05D005712 ORTHO05D007865 1.7e-98 363.6 283 64.7
Lsat_1_v5_gn_2_2221 Lactuca sativa HOM05D005712 ORTHO05D007865 2.2e-98 363.2 334 56.9
Oeu004544.1 Olea europaea HOM05D005712 ORTHO05D007865 1.1e-97 360.9 388 54.1
Sc02g0009220 Simmondsia chinensis HOM05D005712 ORTHO05D007865 1.1e-97 360.9 264 67.0
Migut.N02981 Erythranthe guttata HOM05D005712 ORTHO05D007865 1.5e-97 360.5 344 58.4
MBI05_g08201_MAGBIO Magnolia biondii HOM05D005712 ORTHO05D007865 3.2e-97 359.4 311 62.4
Solyc08g042080.3 Solanum lycopersicum HOM05D005712 ORTHO05D007865 5.5e-97 358.6 283 64.3
Sopen08g012540 Solanum pennellii HOM05D005712 ORTHO05D007865 5.5e-97 358.6 283 64.0
ECA238G0561 Erigeron canadensis HOM05D005712 ORTHO05D007865 2.1e-96 356.7 330 58.5
Aa31LG7G4990 Aethionema arabicum HOM05D005712 ORTHO05D007865 4.7e-96 355.5 359 53.5
DCAR_022990 Daucus carota HOM05D000190 ORTHO05D007865 4.7e-96 355.5 354 55.9
THA.LOC104813742 Tarenaya hassleriana HOM05D005712 ORTHO05D007865 4.7e-96 355.5 334 56.9
CANSAT35G0891 Cannabis sativa HOM05D005712 ORTHO05D007865 6.1e-96 355.1 359 56.8
FvH4_5g25940 Fragaria vesca HOM05D005712 ORTHO05D007865 1.0e-95 354.4 285 63.2
Lj1g0001697 Lotus japonicus HOM05D005712 ORTHO05D007865 2.3e-95 353.2 355 54.9
Glyma.06G015100 Glycine max HOM05D005712 ORTHO05D007865 3.0e-95 352.8 328 56.7
SalBow6G6969 Salvia bowleyana HOM05D005712 ORTHO05D007865 1.1e-94 350.9 401 50.1
Aqoxy6G01560 Aquilegia oxysepala HOM05D005712 ORTHO05D007865 2.0e-94 350.1 280 63.9
Carub.0001s2029 Capsella rubella HOM05D005712 ORTHO05D007865 7.5e-94 348.2 370 54.6
Phvul.009G007500 Phaseolus vulgaris HOM05D005712 ORTHO05D007865 9.7e-94 347.8 329 57.4
VMungo1309G2122 Vigna mungo HOM05D005712 ORTHO05D007865 1.7e-93 347.1 314 58.9
Glyma.04G015100 Glycine max HOM05D005712 ORTHO05D007865 2.2e-93 346.7 331 58.0
arahy.Tifrunner.gnm1.ann1.CTTM8W Arachis hypogaea HOM05D005712 ORTHO05D007865 4.8e-93 345.5 280 62.9
AUR62035160 Chenopodium quinoa HOM05D005712 ORTHO05D007865 6.3e-93 345.1 355 54.1
CARHR021260 Cardamine hirsuta HOM05D005712 ORTHO05D007865 8.2e-93 344.7 346 54.9
Lalb_Chr23g0265571 Lupinus albus HOM05D005712 ORTHO05D007865 1.1e-92 344.4 280 64.6
PSO675G3648 Papaver somniferum HOM05D005712 ORTHO05D007865 1.1e-92 344.4 351 53.6
AT1G20830 Arabidopsis thaliana HOM05D005712 ORTHO05D007865 1.8e-92 343.6 367 54.2
BcaC05g25986 Brassica carinata HOM05D005712 ORTHO05D007865 1.8e-92 343.6 328 55.8
C05p19380 Brassica napus HOM05D005712 ORTHO05D007865 1.8e-92 343.6 328 55.8
Thhalv10007995m.g Eutrema salsugineum HOM05D005712 ORTHO05D007865 2.4e-92 343.2 330 55.5
PSO541G4707 Papaver somniferum HOM05D005712 ORTHO05D007865 2.4e-92 343.2 351 53.8
HanXRQChr06g0185301 Helianthus annuus HOM05D005712 ORTHO05D007865 4.1e-92 342.4 302 60.6
Sp1g18530 Schrenkiella parvula HOM05D005712 ORTHO05D007865 5.3e-92 342.0 260 67.7
Peaxi162Scf00632g00416 Petunia axillaris HOM05D005712 ORTHO05D007865 7.0e-92 341.7 274 65.3
BcaB03g12849 Brassica carinata HOM05D005712 ORTHO05D007865 9.1e-92 341.3 256 66.4
Cc10_g00320 Coffea canephora HOM05D005712 ORTHO05D007865 2.0e-91 340.1 260 65.8
A06p16820 Brassica napus HOM05D005712 ORTHO05D007865 3.5e-91 339.3 235 71.5
BraA06t24791Z Brassica rapa HOM05D005712 ORTHO05D007865 3.5e-91 339.3 235 71.5
BolC5t30641H Brassica oleracea HOM05D005712 ORTHO05D007865 4.5e-91 339.0 329 55.6
SGA_v2.0_scaffold54G19632 Striga asiatica HOM05D005712 ORTHO05D007865 5.9e-91 338.6 310 58.1
BcaB07g32078 Brassica carinata HOM05D005712 ORTHO05D007865 1.7e-90 337.0 258 66.7
Ca_15390_v3 Cicer arietinum L. HOM05D005712 ORTHO05D007865 8.5e-90 334.7 261 64.4
Medtr3g116050 Medicago truncatula HOM05D005712 ORTHO05D007865 2.5e-89 333.2 260 65.0
RcHm_v2.0_Chr4g0410601 Rosa chinensis HOM05D005712 ORTHO05D007865 1.6e-88 330.5 260 66.5
AL1G33850 Arabidopsis lyrata HOM05D005712 ORTHO05D007865 2.8e-85 319.7 239 66.5
CDE04G2669 Ceratophyllum demersum HOM05D005712 ORTHO05D007865 2.8e-85 319.7 293 57.7
Ca_29628_v3 Cicer arietinum L. HOM05D005712 ORTHO05D007865 5.4e-84 315.5 218 71.6
arahy.Tifrunner.gnm1.ann1.16JRKN Arachis hypogaea HOM05D005712 ORTHO05D007865 2.0e-83 313.5 217 70.0
TPR.G38133 Trifolium pratense HOM05D005712 ORTHO05D007865 4.5e-83 312.4 257 62.3
Hma1.2p1_0699F.1_g205640 Hydrangea macrophylla HOM05D005712 ORTHO05D007865 3.8e-82 309.3 205 73.2
ATR0807G100 Amborella trichopoda HOM05D005712 ORTHO05D007865 4.7e-80 302.4 264 59.8
Psat5g008680 Pisum sativum HOM05D005712 ORTHO05D007865 2.7e-75 286.6 202 69.3
unitig_22.g5745 Utricularia gibba HOM05D005712 ORTHO05D007865 3.8e-74 282.7 231 66.2
HPP92_022548 Vanilla planifolia HOM05D005712 ORTHO05D007865 1.8e-71 273.9 274 54.0
SEGI_27803 Sequoiadendron giganteum HOM05D005712 ORTHO05D007865 1.5e-65 254.2 246 53.3
Zm00001eb072780 Zea mays HOM05D005712 ORTHO05D007865 1.5e-65 254.2 250 50.8
Zm00001eb428100 Zea mays HOM05D005712 ORTHO05D007865 3.3e-65 253.1 250 49.6
Cpa.g.sc26.148 Carica papaya HOM05D005712 ORTHO05D007865 9.5e-65 251.5 150 80.7
Os04g0584900 Oryza sativa ssp. japonica HOM05D005712 ORTHO05D007865 2.8e-64 250.0 319 44.5
AagrBONN_evm.TU.Sc2ySwM_117.1031 Anthoceros agrestis HOM05D005712 ORTHO05D007865 4.1e-52 209.5 165 61.2
Oeu019899.1 Olea europaea HOM05D005712 ORTHO05D007865 4.1e-52 209.5 121 80.2
SMO276G0054 Selaginella moellendorffii HOM05D005712 ORTHO05D007865 3.5e-51 206.5 197 54.3
Mapoly0022s0159 Marchantia polymorpha HOM05D005712 ORTHO05D007865 7.8e-51 205.3 217 49.8
Pp3c9_6030 Physcomitrium patens HOM05D005712 ORTHO05D007865 4.3e-49 199.5 203 50.7
Duzib093G1432 Durio zibethinus HOM05D005712 ORTHO05D007865 2.3e-47 193.7 103 85.4
Pp3c15_5620 Physcomitrium patens HOM05D005712 ORTHO05D007865 9.9e-46 188.3 231 43.7
Cpa.g.c30366.3 Carica papaya HOM05D005712 ORTHO05D007865 4.0e-31 139.8 79 75.9
Cpa.g.c44851 Carica papaya HOM05D005712 ORTHO05D007865 9.9e-30 135.2 69 85.5
Oeu019902.1 Olea europaea HOM05D005712 ORTHO05D007865 1.7e-21 107.8 181 40.9
A07p15460 Brassica napus HOM05D005712 ORTHO05D007865 1.8e-15 87.8 58 69.0
BolC8t49668H Brassica oleracea HOM05D005712 ORTHO05D032168 1.0e-10 72.0 136 32.4
BcaB03g14422 Brassica carinata HOM05D005712 ORTHO05D014368 8.2e-08 62.4 43 67.4
BcaC07g39055 Brassica carinata HOM05D005712 ORTHO05D032168 1.1e-07 62.0 146 30.1
C08p20390 Brassica napus HOM05D005712 ORTHO05D032168 6.9e-07 59.3 137 34.3
Cpa.g.c30633.1 Carica papaya HOM05D005712 ORTHO05D120172 1.2e-06 58.5 56 57.1
HPP92_022533 Vanilla planifolia HOM05D004721 ORTHO05D005765 7.6e-06 55.8 107 36.4


User provided reference genes

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