Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G134600 Carya illinoinensis HOM05D001417 ORTHO05D127758 1.8e-30 135.2 64 100.0
Potri.002G006200 Populus trichocarpa HOM05D001417 ORTHO05D001496 5.6e-08 60.5 55 60.0
Potri.005G255400 Populus trichocarpa HOM05D001417 ORTHO05D001496 5.6e-08 60.5 55 60.0
Sabra05G0198000 Salix brachista HOM05D005669 ORTHO05D007632 7.3e-08 60.1 55 58.2
Manes.18G002700 Manihot esculenta HOM05D001417 ORTHO05D001496 1.2e-07 59.3 52 59.6
Prupe.5G006300 Prunus persica HOM05D001417 ORTHO05D001496 1.2e-07 59.3 52 59.6
GSVIVG01013414001 Vitis vinifera HOM05D001417 ORTHO05D001496 1.2e-07 59.3 42 69.0
Cfa014131 Carpinus fangiana HOM05D001417 ORTHO05D001496 1.6e-07 58.9 52 59.6
PGR083G1622 Punica granatum HOM05D001417 ORTHO05D001496 1.6e-07 58.9 52 57.7
Cfa014127 Carpinus fangiana HOM05D001417 ORTHO05D001496 2.1e-07 58.5 52 57.7
TAR376G0442 Trochodendron aralioides HOM05D001417 ORTHO05D001496 2.1e-07 58.5 52 59.6
COL.COLO4_07686 Corchorus olitorius HOM05D001417 ORTHO05D001496 2.8e-07 58.2 35 80.0
Gohir.A01G102400 Gossypium hirsutum HOM05D001417 ORTHO05D001496 2.8e-07 58.2 35 80.0
Gohir.D01G087500 Gossypium hirsutum HOM05D001417 ORTHO05D001496 2.8e-07 58.2 35 80.0
Gorai.002G113400 Gossypium raimondii HOM05D001417 ORTHO05D001496 2.8e-07 58.2 35 80.0
Hma1.2p1_0612F.1_g189010 Hydrangea macrophylla HOM05D001417 ORTHO05D001496 2.8e-07 58.2 52 59.6
Hma1.2p1_0699F.1_g205650 Hydrangea macrophylla HOM05D001417 ORTHO05D001496 2.8e-07 58.2 52 59.6
Oeu062546.1 Olea europaea HOM05D001417 ORTHO05D001496 2.8e-07 58.2 52 57.7
Thecc.08G064300 Theobroma cacao HOM05D001417 ORTHO05D001496 2.8e-07 58.2 35 80.0
arahy.Tifrunner.gnm1.ann1.63YJK9 Arachis hypogaea HOM05D001417 ORTHO05D001496 3.6e-07 57.8 52 57.7
arahy.Tifrunner.gnm1.ann1.D961UC Arachis hypogaea HOM05D001417 ORTHO05D001496 3.6e-07 57.8 52 57.7
Duzib093G1436 Durio zibethinus HOM05D001417 ORTHO05D001496 3.6e-07 57.8 35 77.1
Lj1g0007358 Lotus japonicus HOM05D001417 ORTHO05D001496 3.6e-07 57.8 52 57.7
Sabra02G0004400 Salix brachista HOM05D001417 ORTHO05D001496 3.6e-07 57.8 55 56.4
Atru.chr13.77 Acer truncatum HOM05D001417 ORTHO05D001496 4.7e-07 57.4 51 58.8
MD06G1005100 Malus domestica HOM05D001417 ORTHO05D001496 6.2e-07 57.0 42 66.7
Manes.05G126200 Manihot esculenta HOM05D001417 ORTHO05D001496 6.2e-07 57.0 52 57.7
Nitab4.5_0000783g0080 Nicotiana tabacum HOM05D001417 ORTHO05D001496 6.2e-07 57.0 52 53.8
QL02p015336 Quercus lobata HOM05D001417 ORTHO05D001496 6.2e-07 57.0 51 58.8
Haze_22848 Corylus avellana HOM05D001417 ORTHO05D001496 8.1e-07 56.6 52 57.7
Hund05082 Selenicereus undatus HOM05D001417 ORTHO05D001496 8.1e-07 56.6 52 51.9
MSTRG.3645 Avicennia marina HOM05D001417 ORTHO05D001496 1.1e-06 56.2 38 73.7
CSS0011753 Camellia sinensis var. sinensis HOM05D001417 ORTHO05D001496 1.1e-06 56.2 52 55.8
Ca_15389_v3 Cicer arietinum L. HOM05D001417 ORTHO05D001496 1.1e-06 56.2 52 55.8
Ca_29629_v3 Cicer arietinum L. HOM05D001417 ORTHO05D001496 1.1e-06 56.2 52 55.8
CAN.G1645.2 Capsicum annuum HOM05D001417 ORTHO05D001496 1.4e-06 55.8 52 53.8
ClCG08G009230 Citrullus lanatus HOM05D001417 ORTHO05D001496 1.4e-06 55.8 52 55.8
ECA246G5036 Erigeron canadensis HOM05D001417 ORTHO05D001496 1.4e-06 55.8 35 74.3
HanXRQChr02g0036981 Helianthus annuus HOM05D001417 ORTHO05D001496 1.4e-06 55.8 35 74.3
Lalb_Chr08g0246531 Lupinus albus HOM05D001417 ORTHO05D001496 1.4e-06 55.8 52 53.8
RcHm_v2.0_Chr4g0410591 Rosa chinensis HOM05D001417 ORTHO05D001496 1.4e-06 55.8 47 61.7
HanXRQChr16g0532121 Helianthus annuus HOM05D001417 ORTHO05D001496 1.8e-06 55.5 35 71.4
Lsat_1_v5_gn_3_68921 Lactuca sativa HOM05D001417 ORTHO05D001496 1.8e-06 55.5 35 71.4
Peaxi162Scf00362g00145 Petunia axillaris HOM05D001417 ORTHO05D001496 1.8e-06 55.5 52 53.8
TAR628G0233 Trochodendron aralioides HOM05D001417 ORTHO05D001496 1.8e-06 55.5 42 64.3
ATR0807G155 Amborella trichopoda HOM05D001417 ORTHO05D001496 2.3e-06 55.1 35 74.3
CiPaw.08G076700 Carya illinoinensis HOM05D001417 ORTHO05D001496 2.3e-06 55.1 51 54.9
Dinv40208 Davidia involucrata HOM05D001417 ORTHO05D001496 2.3e-06 55.1 35 74.3
Eucgr.F01805 Eucalyptus grandis HOM05D001417 ORTHO05D001496 2.3e-06 55.1 42 66.7
FvH4_1g10110 Fragaria vesca HOM05D001417 ORTHO05D001496 2.3e-06 55.1 35 74.3
FAN23G2861 Fragaria x ananassa HOM05D001417 ORTHO05D001496 2.3e-06 55.1 35 74.3
FAN26G2085 Fragaria x ananassa HOM05D001417 ORTHO05D001496 2.3e-06 55.1 35 74.3
FAN28G1219 Fragaria x ananassa HOM05D001417 ORTHO05D001496 2.3e-06 55.1 35 74.3
Prupe.7G186000 Prunus persica HOM05D001417 ORTHO05D001496 2.3e-06 55.1 35 74.3
TAR625G0025 Trochodendron aralioides HOM05D001417 ORTHO05D001496 2.3e-06 55.1 35 74.3
Actinidia37908 Actinidia chinensis HOM05D001417 ORTHO05D001496 3.1e-06 54.7 52 57.7
Dinv31978 Davidia involucrata HOM05D001417 ORTHO05D001496 3.1e-06 54.7 52 55.8
Eucgr.I02208 Eucalyptus grandis HOM05D001417 ORTHO05D001496 3.1e-06 54.7 38 68.4
FAN04G1227 Fragaria x ananassa HOM05D001417 ORTHO05D001496 3.1e-06 54.7 51 56.9
Lalb_Chr11g0061381 Lupinus albus HOM05D001417 ORTHO05D001496 3.1e-06 54.7 52 53.8
Medtr3g116060 Medicago truncatula HOM05D001417 ORTHO05D001496 3.1e-06 54.7 52 53.8
Phvul.009G007600 Phaseolus vulgaris HOM05D001417 ORTHO05D001496 3.1e-06 54.7 35 71.4
Sed0020182 Sechium edule HOM05D001417 ORTHO05D001496 3.1e-06 54.7 51 54.9
TWI12G0798 Tripterygium wilfordii HOM05D001417 ORTHO05D001496 3.1e-06 54.7 42 61.9
VMungo1309G2589 Vigna mungo HOM05D001417 ORTHO05D001496 3.1e-06 54.7 52 53.8
Aa31LG7G5000 Aethionema arabicum HOM05D001417 ORTHO05D001496 4.0e-06 54.3 35 71.4
AL1G33860 Arabidopsis lyrata HOM05D001417 ORTHO05D001496 4.0e-06 54.3 35 71.4
AT1G20840 Arabidopsis thaliana HOM05D001417 ORTHO05D001496 4.0e-06 54.3 35 71.4
BcaB03g12848 Brassica carinata HOM05D001417 ORTHO05D001496 4.0e-06 54.3 35 71.4
BcaC07g39056 Brassica carinata HOM05D001417 ORTHO05D001496 4.0e-06 54.3 35 71.4
A08p29210 Brassica napus HOM05D001417 ORTHO05D001496 4.0e-06 54.3 35 71.4
C08p20400 Brassica napus HOM05D001417 ORTHO05D001496 4.0e-06 54.3 35 71.4
BolC8t49669H Brassica oleracea HOM05D001417 ORTHO05D001496 4.0e-06 54.3 35 71.4
BraA08t34856Z Brassica rapa HOM05D001417 ORTHO05D001496 4.0e-06 54.3 35 71.4
Carub.0001s2030 Capsella rubella HOM05D001417 ORTHO05D001496 4.0e-06 54.3 35 71.4
CARHR021270 Cardamine hirsuta HOM05D001417 ORTHO05D001496 4.0e-06 54.3 35 71.4
Ciclev10027893m.g Citrus clementina HOM05D001417 ORTHO05D001496 4.0e-06 54.3 35 71.4
Cc09_g10840 Coffea canephora HOM05D001417 ORTHO05D001496 4.0e-06 54.3 52 53.8
DCAR_016794 Daucus carota HOM05D001417 ORTHO05D001496 4.0e-06 54.3 52 55.8
Thhalv10006916m.g Eutrema salsugineum HOM05D001417 ORTHO05D001496 4.0e-06 54.3 35 71.4
FvH4_5g25950 Fragaria vesca HOM05D001417 ORTHO05D001496 4.0e-06 54.3 51 54.9
FAN13G0150 Fragaria x ananassa HOM05D001417 ORTHO05D001496 4.0e-06 54.3 51 54.9
FAN18G2756 Fragaria x ananassa HOM05D001417 ORTHO05D001496 4.0e-06 54.3 51 54.9
Glyma.04G015000 Glycine max HOM05D001417 ORTHO05D001496 4.0e-06 54.3 52 51.9
Glyma.06G015000 Glycine max HOM05D001417 ORTHO05D001496 4.0e-06 54.3 52 51.9
MD15G1228300 Malus domestica HOM05D001417 ORTHO05D001496 4.0e-06 54.3 35 71.4
QL06p053283 Quercus lobata HOM05D001417 ORTHO05D001496 4.0e-06 54.3 38 65.8
Sp1g18540 Schrenkiella parvula HOM05D001417 ORTHO05D001496 4.0e-06 54.3 35 71.4
HPP92_022549 Vanilla planifolia HOM05D001417 ORTHO05D001496 4.0e-06 54.3 35 71.4
Actinidia28752 Actinidia chinensis HOM05D001417 ORTHO05D001496 5.2e-06 53.9 35 71.4
Actinidia35688 Actinidia chinensis HOM05D001417 ORTHO05D001496 5.2e-06 53.9 35 71.4
Aqoxy5G00972 Aquilegia oxysepala HOM05D001417 ORTHO05D001496 5.2e-06 53.9 35 71.4
CSS0030411 Camellia sinensis var. sinensis HOM05D001417 ORTHO05D001496 5.2e-06 53.9 52 51.9
CSS0048699 Camellia sinensis var. sinensis HOM05D001417 ORTHO05D001496 5.2e-06 53.9 35 71.4
CiPaw.06G115100 Carya illinoinensis HOM05D001417 ORTHO05D001496 5.2e-06 53.9 35 71.4
ClCG02G010410 Citrullus lanatus HOM05D001417 ORTHO05D001496 5.2e-06 53.9 35 71.4
MELO3C013489.2 Cucumis melo HOM05D001417 ORTHO05D001496 5.2e-06 53.9 35 71.4
CsaV3_6G010070 Cucumis sativus L. HOM05D001417 ORTHO05D001496 5.2e-06 53.9 35 71.4
Dinv14176 Davidia involucrata HOM05D001417 ORTHO05D001496 5.2e-06 53.9 35 71.4
Lalb_Chr10g0107671 Lupinus albus HOM05D001417 ORTHO05D001496 5.2e-06 53.9 35 71.4
Manes.03G097500 Manihot esculenta HOM05D001417 ORTHO05D001496 5.2e-06 53.9 35 71.4
Manes.15G114800 Manihot esculenta HOM05D001417 ORTHO05D001496 5.2e-06 53.9 35 71.4
QL11p056469 Quercus lobata HOM05D001417 ORTHO05D001496 5.2e-06 53.9 35 71.4
RcHm_v2.0_Chr7g0216501 Rosa chinensis HOM05D001417 ORTHO05D001496 5.2e-06 53.9 42 61.9
Sed0015929 Sechium edule HOM05D001417 ORTHO05D001496 5.2e-06 53.9 35 71.4
Sopen01g054330 Solanum pennellii HOM05D001417 ORTHO05D001496 5.2e-06 53.9 51 51.0
THA.LOC104812001 Tarenaya hassleriana HOM05D001417 ORTHO05D001496 5.2e-06 53.9 35 68.6
THA.LOC104813741 Tarenaya hassleriana HOM05D001417 ORTHO05D001496 5.2e-06 53.9 35 68.6
TPR.G38221 Trifolium pratense HOM05D001417 ORTHO05D001496 5.2e-06 53.9 35 71.4
TWI75G0914 Tripterygium wilfordii HOM05D001417 ORTHO05D001496 5.2e-06 53.9 52 51.9
vmacro04422 Vaccinium macrocarpon HOM05D001417 ORTHO05D001496 5.2e-06 53.9 52 51.9
arahy.Tifrunner.gnm1.ann1.FUIL2B Arachis hypogaea HOM05D001417 ORTHO05D001496 6.8e-06 53.5 35 71.4
arahy.Tifrunner.gnm1.ann1.SMD16A Arachis hypogaea HOM05D001417 ORTHO05D001496 6.8e-06 53.5 35 71.4
CAN.G1330.4 Capsicum annuum HOM05D001417 ORTHO05D001496 6.8e-06 53.5 52 53.8
Cfa007105 Carpinus fangiana HOM05D001417 ORTHO05D001496 6.8e-06 53.5 38 65.8
CDE02G3111 Ceratophyllum demersum HOM05D001417 ORTHO05D001496 6.8e-06 53.5 35 71.4
CDE04G2685 Ceratophyllum demersum HOM05D001417 ORTHO05D001496 6.8e-06 53.5 35 71.4
ClCG01G020960 Citrullus lanatus HOM05D001417 ORTHO05D001496 6.8e-06 53.5 35 71.4
Haze_03637 Corylus avellana HOM05D001417 ORTHO05D001496 6.8e-06 53.5 38 65.8
MELO3C007980.2 Cucumis melo HOM05D001417 ORTHO05D001496 6.8e-06 53.5 35 71.4
Hma1.2p1_0631F.1_g192340 Hydrangea macrophylla HOM05D001417 ORTHO05D001496 6.8e-06 53.5 35 71.4
Psat5g008640 Pisum sativum HOM05D001417 ORTHO05D001496 6.8e-06 53.5 52 51.9
RcHm_v2.0_Chr2g0096891 Rosa chinensis HOM05D001417 ORTHO05D001496 6.8e-06 53.5 35 68.6
Sed0016318 Sechium edule HOM05D001417 ORTHO05D001496 6.8e-06 53.5 35 71.4
Hund06361 Selenicereus undatus HOM05D001417 ORTHO05D001496 6.8e-06 53.5 52 50.0
Solyc04g082700.3 Solanum lycopersicum HOM05D001417 ORTHO05D001496 6.8e-06 53.5 52 53.8
Sopen04g036330 Solanum pennellii HOM05D001417 ORTHO05D001496 6.8e-06 53.5 52 53.8
PGSC0003DMG400009994 Solanum tuberosum HOM05D001417 ORTHO05D001496 6.8e-06 53.5 52 53.8
SGA_v2.0_scaffold132G34579 Striga asiatica HOM05D001417 ORTHO05D001496 6.8e-06 53.5 35 71.4
TPR.G38093 Trifolium pratense HOM05D001417 ORTHO05D001496 6.8e-06 53.5 52 51.9
TWI36G1254 Tripterygium wilfordii HOM05D001417 ORTHO05D001496 6.8e-06 53.5 42 59.5
GSVIVG01023868001 Vitis vinifera HOM05D001417 ORTHO05D001496 6.8e-06 53.5 38 68.4
HanXRQChr10g0316271 Helianthus annuus HOM05D001417 ORTHO05D001496 8.9e-06 53.1 52 53.8
Lj4A811T121 Lonicera japonica HOM05D001417 ORTHO05D001496 8.9e-06 53.1 52 55.8
MBI08_g29071_MAGBIO Magnolia biondii HOM05D001417 ORTHO05D001496 8.9e-06 53.1 35 71.4
Nn6g31664 Nelumbo nucifera HOM05D001417 ORTHO05D001496 8.9e-06 53.1 35 71.4
PSO170G2554 Papaver somniferum HOM05D001417 ORTHO05D001496 8.9e-06 53.1 35 71.4
PSO210G4097 Papaver somniferum HOM05D001417 ORTHO05D001496 8.9e-06 53.1 35 71.4
Peaxi162Scf00680g00057 Petunia axillaris HOM05D001417 ORTHO05D001496 8.9e-06 53.1 52 51.9


User provided reference genes

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