Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G132800 Carya illinoinensis HOM05D006709 ORTHO05D008329 4.5e-39 164.1 80 100.0
GSVIVG01013436001 Vitis vinifera HOM05D006709 ORTHO05D008329 4.5e-31 137.5 78 80.8
Actinidia17082 Actinidia chinensis HOM05D006709 ORTHO05D008329 1.3e-30 136.0 80 81.2
Ciclev10002952m.g Citrus clementina HOM05D006709 ORTHO05D008329 2.2e-30 135.2 80 86.2
vmacro21761 Vaccinium macrocarpon HOM05D006709 ORTHO05D008329 2.2e-30 135.2 80 80.0
Actinidia15528 Actinidia chinensis HOM05D006709 ORTHO05D008329 5.0e-30 134.0 80 81.2
Dinv05492 Davidia involucrata HOM05D006709 ORTHO05D008329 6.5e-30 133.7 80 81.2
PGR031G3816 Punica granatum HOM05D006709 ORTHO05D008329 8.5e-30 133.3 80 81.2
CSS0027441 Camellia sinensis var. sinensis HOM05D006709 ORTHO05D008329 1.4e-29 132.5 80 77.5
MELO3C016084.2 Cucumis melo HOM05D006709 ORTHO05D008329 1.4e-29 132.5 78 80.8
CSS0014821 Camellia sinensis var. sinensis HOM05D006709 ORTHO05D008329 1.9e-29 132.1 79 78.5
Haze_22867 Corylus avellana HOM05D006709 ORTHO05D008329 1.9e-29 132.1 80 83.8
Solyc04g082800.3 Solanum lycopersicum HOM05D006709 ORTHO05D008329 2.5e-29 131.7 77 77.9
Sopen04g036440 Solanum pennellii HOM05D006709 ORTHO05D008329 2.5e-29 131.7 77 77.9
Sed0015665 Sechium edule HOM05D006709 ORTHO05D008329 4.2e-29 131.0 80 81.2
QL02p015873 Quercus lobata HOM05D006709 ORTHO05D008329 5.5e-29 130.6 79 79.7
ClCG07G009870 Citrullus lanatus HOM05D006709 ORTHO05D008329 7.2e-29 130.2 80 81.2
Manes.18G001600 Manihot esculenta HOM05D006709 ORTHO05D008329 7.2e-29 130.2 80 80.0
Nitab4.5_0007096g0020 Nicotiana tabacum HOM05D006709 ORTHO05D008329 7.2e-29 130.2 77 77.9
Os08g0512900 Oryza sativa ssp. japonica HOM05D006709 ORTHO05D008329 7.2e-29 130.2 75 81.3
Gohir.A09G212700 Gossypium hirsutum HOM05D006709 ORTHO05D008329 9.4e-29 129.8 80 78.8
Gohir.D09G206300 Gossypium hirsutum HOM05D006709 ORTHO05D008329 9.4e-29 129.8 80 78.8
Gorai.006G230200 Gossypium raimondii HOM05D006709 ORTHO05D008329 9.4e-29 129.8 80 78.8
Peaxi162Scf00385g00310 Petunia axillaris HOM05D006709 ORTHO05D008329 9.4e-29 129.8 77 77.9
Duzib212G0839 Durio zibethinus HOM05D006709 ORTHO05D008329 1.2e-28 129.4 80 78.8
Prupe.1G298300 Prunus persica HOM05D006709 ORTHO05D008329 1.2e-28 129.4 80 80.0
SalBow7G4607 Salvia bowleyana HOM05D006709 ORTHO05D008329 1.2e-28 129.4 78 79.5
CAN.G1330.15 Capsicum annuum HOM05D006709 ORTHO05D008329 2.1e-28 128.6 79 77.2
Potri.005G257100 Populus trichocarpa HOM05D006709 ORTHO05D008329 2.7e-28 128.3 80 77.5
Cpa.g.sc26.6 Carica papaya HOM05D006709 ORTHO05D008329 3.6e-28 127.9 78 78.2
Cc10_g00210 Coffea canephora HOM05D006709 ORTHO05D008329 3.6e-28 127.9 78 73.1
MBI04_g31214_MAGBIO Magnolia biondii HOM05D006709 ORTHO05D008329 4.6e-28 127.5 78 71.8
Hund05070 Selenicereus undatus HOM05D006709 ORTHO05D008329 4.6e-28 127.5 72 80.6
Sc15g0004050 Simmondsia chinensis HOM05D006709 ORTHO05D008329 4.6e-28 127.5 79 72.2
ATR0605G117 Amborella trichopoda HOM05D006709 ORTHO05D008329 6.1e-28 127.1 78 79.5
FvH4_5g26200 Fragaria vesca HOM05D006709 ORTHO05D008329 1.0e-27 126.3 81 72.8
FAN08G1650 Fragaria x ananassa HOM05D006709 ORTHO05D008329 1.0e-27 126.3 81 72.8
FAN13G1766 Fragaria x ananassa HOM05D006709 ORTHO05D008329 1.0e-27 126.3 81 72.8
RcHm_v2.0_Chr7g0216881 Rosa chinensis HOM05D006709 ORTHO05D008329 1.0e-27 126.3 81 74.1
Thecc.08G099000 Theobroma cacao HOM05D006709 ORTHO05D008329 1.0e-27 126.3 80 76.2
Ah.11g042070 Amaranthus hybridus HOM05D006709 ORTHO05D008329 1.4e-27 125.9 78 78.2
Glyma.04G014200 Glycine max HOM05D006709 ORTHO05D008329 1.4e-27 125.9 73 80.8
EL10Ac1g01866 Beta vulgaris HOM05D006709 ORTHO05D008329 1.8e-27 125.6 72 80.6
Lsat_1_v5_gn_9_48241 Lactuca sativa HOM05D006709 ORTHO05D008329 1.8e-27 125.6 72 81.9
TWI56G0059 Tripterygium wilfordii HOM05D006709 ORTHO05D008329 3.0e-27 124.8 79 75.9
arahy.Tifrunner.gnm1.ann1.6A59KD Arachis hypogaea HOM05D006709 ORTHO05D008329 3.9e-27 124.4 80 73.8
CANSAT78G0412 Cannabis sativa HOM05D006709 ORTHO05D008329 3.9e-27 124.4 80 73.8
VMungo1309G2593 Vigna mungo HOM05D006709 ORTHO05D008329 3.9e-27 124.4 80 72.5
Atru.chr13.44 Acer truncatum HOM05D006709 ORTHO05D008329 5.1e-27 124.0 77 75.3
HanXRQChr12g0367591 Helianthus annuus HOM05D006709 ORTHO05D008329 6.7e-27 123.6 80 72.5
Lj4A4T20 Lonicera japonica HOM05D006709 ORTHO05D008329 6.7e-27 123.6 82 75.6
ECA233G3448 Erigeron canadensis HOM05D006709 ORTHO05D008329 8.8e-27 123.2 72 79.2
Migut.C00352 Erythranthe guttata HOM05D006709 ORTHO05D008329 8.8e-27 123.2 77 71.4
FAN18G1826 Fragaria x ananassa HOM05D006709 ORTHO05D008329 8.8e-27 123.2 81 71.6
Duzib151G1059 Durio zibethinus HOM05D006709 ORTHO05D008329 1.1e-26 122.9 80 75.0
arahy.Tifrunner.gnm1.ann1.ZQQY3F Arachis hypogaea HOM05D006709 ORTHO05D008329 1.5e-26 122.5 80 72.5
Phvul.009G008700 Phaseolus vulgaris HOM05D006709 ORTHO05D008329 1.5e-26 122.5 80 72.5
MD06G1003100 Malus domestica HOM05D006709 ORTHO05D008329 2.0e-26 122.1 74 78.4
Medtr3g116150 Medicago truncatula HOM05D006709 ORTHO05D008329 2.0e-26 122.1 71 76.1
Lalb_Chr03g0035821 Lupinus albus HOM05D006709 ORTHO05D008329 2.5e-26 121.7 72 77.8
PSO017G0586 Papaver somniferum HOM05D006709 ORTHO05D008329 2.5e-26 121.7 83 73.5
TPR.G38103 Trifolium pratense HOM05D006709 ORTHO05D008329 2.5e-26 121.7 80 71.2
CDE05G2376 Ceratophyllum demersum HOM05D006709 ORTHO05D008329 3.3e-26 121.3 78 74.4
Lsat_1_v5_gn_8_26041 Lactuca sativa HOM05D006709 ORTHO05D008329 3.3e-26 121.3 72 79.2
PGSC0003DMG400009925 Solanum tuberosum HOM05D006709 ORTHO05D008329 3.3e-26 121.3 77 74.0
Ca_15382_v3 Cicer arietinum L. HOM05D006709 ORTHO05D008329 4.3e-26 120.9 72 73.6
Oeu035869.2 Olea europaea HOM05D006709 ORTHO05D008329 5.7e-26 120.6 73 76.7
Hma1.2p1_0489F.1_g164140 Hydrangea macrophylla HOM05D006709 ORTHO05D008329 7.4e-26 120.2 81 74.1
Carub.0004s1522 Capsella rubella HOM05D006709 ORTHO05D008329 9.7e-26 119.8 78 70.5
Lalb_Chr04g0257801 Lupinus albus HOM05D006709 ORTHO05D008329 1.3e-25 119.4 72 76.4
Psat5g008400 Pisum sativum HOM05D006709 ORTHO05D008329 1.7e-25 119.0 72 76.4
COL.COLO4_12285 Corchorus olitorius HOM05D006709 ORTHO05D008329 2.8e-25 118.2 80 71.2
Lj1g0007500 Lotus japonicus HOM05D006709 ORTHO05D008329 3.7e-25 117.9 80 71.2
unitig_37.g13048 Utricularia gibba HOM05D006709 ORTHO05D008329 3.7e-25 117.9 72 76.4
Aa31LG9G13520 Aethionema arabicum HOM05D006709 ORTHO05D008329 6.3e-25 117.1 78 70.5
Rhsim06G0002600 Rhododendron simsii HOM05D006709 ORTHO05D008329 1.4e-24 115.9 84 64.3
Eucgr.F03607 Eucalyptus grandis HOM05D006709 ORTHO05D008329 1.8e-24 115.5 77 70.1
CsaV3_4G008460 Cucumis sativus L. HOM05D006709 ORTHO05D008329 5.3e-24 114.0 63 85.7
HPP92_015749 Vanilla planifolia HOM05D006709 ORTHO05D008329 5.3e-24 114.0 68 80.9
Nn5g31057 Nelumbo nucifera HOM05D006709 ORTHO05D008329 9.1e-24 113.2 107 58.9
BcaC01g05832 Brassica carinata HOM05D006709 ORTHO05D008329 1.2e-23 112.8 78 70.5
C03p21970 Brassica napus HOM05D006709 ORTHO05D008329 1.2e-23 112.8 78 70.5
BolC3t14580H Brassica oleracea HOM05D006709 ORTHO05D008329 1.2e-23 112.8 78 70.5
BraA03t11140Z Brassica rapa HOM05D006709 ORTHO05D008329 1.2e-23 112.8 78 70.5
Zm00001eb199960 Zea mays HOM05D006709 ORTHO05D008329 2.0e-23 112.1 61 86.9
A03p18800 Brassica napus HOM05D006709 ORTHO05D008329 2.6e-23 111.7 78 69.2
CARHR127610 Cardamine hirsuta HOM05D006709 ORTHO05D008329 2.6e-23 111.7 78 69.2
AL4G29260 Arabidopsis lyrata HOM05D006709 ORTHO05D008329 3.4e-23 111.3 78 67.9
BcaB01g03928 Brassica carinata HOM05D006709 ORTHO05D008329 4.5e-23 110.9 78 70.5
BolC4t27784H Brassica oleracea HOM05D006709 ORTHO05D008329 5.9e-23 110.5 80 70.0
AT2G33585 Arabidopsis thaliana HOM05D006709 ORTHO05D008329 1.0e-22 109.8 80 70.0
BcaB06g28702 Brassica carinata HOM05D006709 ORTHO05D008329 1.0e-22 109.8 80 70.0
BcaC02g07804 Brassica carinata HOM05D006709 ORTHO05D008329 1.0e-22 109.8 80 70.0
C04p63090 Brassica napus HOM05D006709 ORTHO05D008329 1.3e-22 109.4 80 70.0
Thhalv10017474m.g Eutrema salsugineum HOM05D006709 ORTHO05D008329 1.3e-22 109.4 78 67.9
A04p25850 Brassica napus HOM05D006709 ORTHO05D008329 2.2e-22 108.6 80 70.0
BraA04t18087Z Brassica rapa HOM05D006709 ORTHO05D008329 2.2e-22 108.6 80 70.0
Oeu035760.1 Olea europaea HOM05D006709 ORTHO05D008329 6.5e-22 107.1 84 61.9
Sabra05G0199000 Salix brachista HOM05D006709 ORTHO05D008329 1.1e-21 106.3 61 80.3
Glyma.06G014200 Glycine max HOM05D006709 ORTHO05D008329 2.5e-21 105.1 80 65.0
SEGI_16420 Sequoiadendron giganteum HOM05D006709 ORTHO05D008329 5.5e-21 104.0 68 69.1
TAR628G1717 Trochodendron aralioides HOM05D006709 ORTHO05D008329 1.6e-20 102.4 61 77.0
MSTRG.1007 Avicennia marina HOM05D006709 ORTHO05D008329 8.8e-19 96.7 62 72.6
Aqoxy5G00959 Aquilegia oxysepala HOM05D006709 ORTHO05D008329 2.6e-18 95.1 60 73.3
AagrBONN_evm.TU.Sc2ySwM_344.3753 Anthoceros agrestis HOM05D006709 ORTHO05D008329 3.3e-18 94.7 68 63.2
FAN04G1417 Fragaria x ananassa HOM05D006709 ORTHO05D008329 1.7e-17 92.4 85 58.8
BcaC01g05833 Brassica carinata HOM05D006709 ORTHO05D008329 8.2e-17 90.1 78 59.0
Sp4g15940 Schrenkiella parvula HOM05D006709 ORTHO05D008329 1.1e-16 89.7 65 66.2
Mapoly0015s0105 Marchantia polymorpha HOM05D006709 ORTHO05D008329 5.0e-14 80.9 68 55.9
DCAR_016802 Daucus carota HOM05D006709 ORTHO05D008329 2.5e-13 78.6 70 54.3
Pp3c1_9780 Physcomitrium patens HOM05D006709 ORTHO05D008329 3.6e-12 74.7 68 54.4
SalBow1G7713 Salvia bowleyana HOM05D006709 ORTHO05D008329 1.0e-11 73.2 46 71.7
Manes.05G128900 Manihot esculenta HOM05D006709 ORTHO05D008329 2.3e-11 72.0 53 62.3
vmacro04272 Vaccinium macrocarpon HOM05D006709 ORTHO05D008329 2.2e-09 65.5 44 72.7
AUR62035175 Chenopodium quinoa HOM05D006709 ORTHO05D008329 8.2e-09 63.5 37 81.1
SalBow8G3647 Salvia bowleyana HOM05D006709 ORTHO05D008329 2.4e-08 62.0 38 68.4
DCAR_023021 Daucus carota HOM05D006709 ORTHO05D008329 9.1e-08 60.1 54 50.0


User provided reference genes

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