Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G129900 Carya illinoinensis HOM05D005558 ORTHO05D006832 2.0e-106 389.0 188 100.0
Cfa014170 Carpinus fangiana HOM05D005558 ORTHO05D006832 7.4e-93 344.0 188 89.4
QL02p016334 Quercus lobata HOM05D005558 ORTHO05D006832 5.5e-88 327.8 193 83.9
CiPaw.08G079200 Carya illinoinensis HOM05D005558 ORTHO05D006832 4.7e-87 324.7 188 85.6
PSO170G6225 Papaver somniferum HOM05D005558 ORTHO05D006832 6.7e-78 294.3 190 76.3
COL.COLO4_12262 Corchorus olitorius HOM05D005558 ORTHO05D006832 2.6e-77 292.4 188 74.5
THA.LOC104813721 Tarenaya hassleriana HOM05D005558 ORTHO05D006832 2.6e-77 292.4 194 76.3
Nn6g31548 Nelumbo nucifera HOM05D005558 ORTHO05D006832 5.7e-77 291.2 189 76.2
BcaB03g12837 Brassica carinata HOM05D005558 ORTHO05D006832 7.5e-77 290.8 188 76.1
TWI12G1391 Tripterygium wilfordii HOM05D005558 ORTHO05D006832 7.5e-77 290.8 186 77.4
Eucgr.F01955 Eucalyptus grandis HOM05D005558 ORTHO05D006832 9.7e-77 290.4 223 69.5
Hma1.2p1_0914F.1_g236230 Hydrangea macrophylla HOM05D005558 ORTHO05D006832 9.7e-77 290.4 192 74.0
CSS0024776 Camellia sinensis var. sinensis HOM05D005558 ORTHO05D006832 2.2e-76 289.3 195 74.9
Lsat_1_v5_gn_2_2740 Lactuca sativa HOM05D005558 ORTHO05D006832 2.8e-76 288.9 170 81.8
PSO017G1036 Papaver somniferum HOM05D005558 ORTHO05D006832 2.8e-76 288.9 190 75.8
RcHm_v2.0_Chr7g0217691 Rosa chinensis HOM05D005558 ORTHO05D006832 3.7e-76 288.5 192 75.5
Carub.0001s2052 Capsella rubella HOM05D005558 ORTHO05D006832 1.4e-75 286.6 188 75.5
PGR083G0867 Punica granatum HOM05D005558 ORTHO05D006832 1.4e-75 286.6 191 73.3
FAN04G1408 Fragaria x ananassa HOM05D005558 ORTHO05D006832 3.1e-75 285.4 190 75.8
Prupe.5G000800 Prunus persica HOM05D005558 ORTHO05D006832 3.1e-75 285.4 176 79.5
Thecc.08G097300 Theobroma cacao HOM05D005558 ORTHO05D006832 3.1e-75 285.4 188 73.9
Manes.18G000600 Manihot esculenta HOM05D005558 ORTHO05D006832 4.1e-75 285.0 192 74.5
Glyma.15G161100 Glycine max HOM05D005558 ORTHO05D006832 7.0e-75 284.3 188 74.5
CANSAT25G0089 Cannabis sativa HOM05D005558 ORTHO05D006832 2.0e-74 282.7 188 73.9
CAN.G208.43 Capsicum annuum HOM05D005558 ORTHO05D006832 2.0e-74 282.7 179 72.6
FAN08G1374 Fragaria x ananassa HOM05D005558 ORTHO05D006832 2.7e-74 282.3 190 75.3
Sp1g18730 Schrenkiella parvula HOM05D005558 ORTHO05D006832 3.5e-74 282.0 186 74.2
arahy.Tifrunner.gnm1.ann1.8D2970 Arachis hypogaea HOM05D005558 ORTHO05D006832 4.5e-74 281.6 170 80.0
arahy.Tifrunner.gnm1.ann1.GVHP98 Arachis hypogaea HOM05D005558 ORTHO05D006832 4.5e-74 281.6 170 80.0
BolC8t49687H Brassica oleracea HOM05D005558 ORTHO05D006832 4.5e-74 281.6 188 76.1
BraA08t34846Z Brassica rapa HOM05D005558 ORTHO05D006832 4.5e-74 281.6 172 79.7
Sc17g0004140 Simmondsia chinensis HOM05D005558 ORTHO05D006832 4.5e-74 281.6 172 77.9
AL1G34110 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 5.9e-74 281.2 189 75.1
CARHR021510 Cardamine hirsuta HOM05D005558 ORTHO05D006832 5.9e-74 281.2 188 73.4
Nitab4.5_0003423g0040 Nicotiana tabacum HOM05D005558 ORTHO05D006832 7.7e-74 280.8 179 72.1
Solyc12g095770.2 Solanum lycopersicum HOM05D005558 ORTHO05D006832 7.7e-74 280.8 191 70.2
Sopen12g031670 Solanum pennellii HOM05D005558 ORTHO05D006832 7.7e-74 280.8 191 70.2
A08p29100 Brassica napus HOM05D005558 ORTHO05D006832 1.0e-73 280.4 183 76.5
MSTRG.24533 Avicennia marina HOM05D005558 ORTHO05D006832 1.3e-73 280.0 156 82.7
Thhalv10008709m.g Eutrema salsugineum HOM05D005558 ORTHO05D006832 1.3e-73 280.0 190 74.7
FvH4_5g26780 Fragaria vesca HOM05D005558 ORTHO05D006832 1.3e-73 280.0 192 74.5
FAN18G4437 Fragaria x ananassa HOM05D005558 ORTHO05D006832 1.3e-73 280.0 192 74.5
BcaC07g39074 Brassica carinata HOM05D005558 ORTHO05D006832 2.2e-73 279.3 188 75.5
ATR0605G185 Amborella trichopoda HOM05D005558 ORTHO05D006832 2.9e-73 278.9 185 69.7
CsaV3_4G037850 Cucumis sativus L. HOM05D005558 ORTHO05D006832 6.5e-73 277.7 178 76.4
Potri.002G001500 Populus trichocarpa HOM05D005558 ORTHO05D006832 6.5e-73 277.7 172 79.1
Duzib116G0928 Durio zibethinus HOM05D005558 ORTHO05D006832 8.5e-73 277.3 189 72.5
MD07G1016000 Malus domestica HOM05D005558 ORTHO05D006832 8.5e-73 277.3 148 86.5
Ah.08g212310 Amaranthus hybridus HOM05D005558 ORTHO05D006832 1.1e-72 276.9 185 74.6
BcaC05g26014 Brassica carinata HOM05D005558 ORTHO05D006832 1.1e-72 276.9 172 77.9
Hund05339 Selenicereus undatus HOM05D005558 ORTHO05D006832 1.5e-72 276.6 190 71.1
BcaB07g32099 Brassica carinata HOM05D005558 ORTHO05D006832 1.9e-72 276.2 189 75.1
AT1G21065 Arabidopsis thaliana HOM05D005558 ORTHO05D006832 2.5e-72 275.8 188 72.9
BraA06t24816Z Brassica rapa HOM05D005558 ORTHO05D006832 2.5e-72 275.8 188 72.9
ClCG11G019260 Citrullus lanatus HOM05D005558 ORTHO05D006832 2.5e-72 275.8 178 74.2
GSVIVG01013466001 Vitis vinifera HOM05D005558 ORTHO05D006832 3.2e-72 275.4 148 85.1
MD06G1057400 Malus domestica HOM05D005558 ORTHO05D006832 9.4e-72 273.9 188 72.3
EL10Ac7g17248 Beta vulgaris HOM05D005558 ORTHO05D006832 1.2e-71 273.5 188 70.2
Migut.N03003 Erythranthe guttata HOM05D005558 ORTHO05D006832 1.2e-71 273.5 156 78.8
Gohir.A05G177400 Gossypium hirsutum HOM05D005558 ORTHO05D006832 1.2e-71 273.5 188 71.3
A06p17130 Brassica napus HOM05D005558 ORTHO05D006832 1.6e-71 273.1 188 72.3
Ca_18758_v3 Cicer arietinum L. HOM05D005558 ORTHO05D006832 4.7e-71 271.6 188 72.3
Rhsim06G0000500 Rhododendron simsii HOM05D005558 ORTHO05D006832 4.7e-71 271.6 233 63.5
Lj4g0004166 Lotus japonicus HOM05D005558 ORTHO05D006832 6.1e-71 271.2 188 72.9
Gorai.009G185800 Gossypium raimondii HOM05D005558 ORTHO05D006832 8.0e-71 270.8 188 70.7
Cc10_g00070 Coffea canephora HOM05D005558 ORTHO05D006832 1.0e-70 270.4 144 84.0
Gohir.D05G180800 Gossypium hirsutum HOM05D005558 ORTHO05D006832 1.4e-70 270.0 188 70.2
Peaxi162Scf00064g01430 Petunia axillaris HOM05D005558 ORTHO05D006832 1.4e-70 270.0 178 71.3
Aqoxy5G00965 Aquilegia oxysepala HOM05D005558 ORTHO05D006832 1.8e-70 269.6 191 70.2
Glyma.07G221200 Glycine max HOM05D005558 ORTHO05D006832 2.3e-70 269.2 143 84.6
PGSC0003DMG400029397 Solanum tuberosum HOM05D005558 ORTHO05D006832 2.3e-70 269.2 145 80.7
Os02g0187500 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 5.2e-70 268.1 142 83.8
Psat7g129880 Pisum sativum HOM05D005558 ORTHO05D006832 8.8e-70 267.3 159 79.2
TPR.G20977 Trifolium pratense HOM05D005558 ORTHO05D006832 8.8e-70 267.3 159 79.2
Zm00001eb387340 Zea mays HOM05D005558 ORTHO05D006832 1.2e-69 266.9 154 77.9
Lalb_Chr05g0219661 Lupinus albus HOM05D005558 ORTHO05D006832 1.5e-69 266.5 144 83.3
Lalb_Chr15g0083971 Lupinus albus HOM05D005558 ORTHO05D006832 2.6e-69 265.8 172 75.0
arahy.Tifrunner.gnm1.ann1.09GV4T Arachis hypogaea HOM05D005558 ORTHO05D006832 4.4e-69 265.0 153 81.0
arahy.Tifrunner.gnm1.ann1.H4MLSW Arachis hypogaea HOM05D005558 ORTHO05D006832 4.4e-69 265.0 153 81.0
Medtr4g084120 Medicago truncatula HOM05D005558 ORTHO05D006832 9.8e-69 263.8 174 72.4
Phvul.002G097800 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 1.7e-68 263.1 148 81.1
Zm00001eb234660 Zea mays HOM05D005558 ORTHO05D006832 1.7e-68 263.1 142 80.3
SGA_v2.0_scaffold19G08925 Striga asiatica HOM05D005558 ORTHO05D006832 3.1e-67 258.8 154 76.0
HPP92_021698 Vanilla planifolia HOM05D005558 ORTHO05D006832 3.1e-67 258.8 141 80.1
TAR381G1539 Trochodendron aralioides HOM05D005558 ORTHO05D006832 2.0e-66 256.1 164 78.0
Atru.chr13.17 Acer truncatum HOM05D005558 ORTHO05D006832 1.0e-65 253.8 164 76.8
SEGI_40156 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 7.2e-64 247.7 170 68.8
HPP92_017798 Vanilla planifolia HOM05D005558 ORTHO05D006832 7.2e-64 247.7 183 66.1
SMO259G0018 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 1.6e-63 246.5 140 75.0
Pp3c1_31360 Physcomitrium patens HOM05D005558 ORTHO05D006832 8.0e-63 244.2 168 65.5
Mapoly0002s0034 Marchantia polymorpha HOM05D005558 ORTHO05D006832 1.0e-62 243.8 140 77.1
C08p20580 Brassica napus HOM05D005558 ORTHO05D006832 5.7e-61 238.0 166 74.1
Ciclev10002303m.g Citrus clementina HOM05D005558 ORTHO05D006832 7.5e-61 237.7 173 68.2
Sabra02G0001000 Salix brachista HOM05D005558 ORTHO05D006832 8.3e-60 234.2 175 69.1
Sed0017561 Sechium edule HOM05D005558 ORTHO05D006832 4.1e-59 231.9 152 75.0
Actinidia15539 Actinidia chinensis HOM05D005558 ORTHO05D006832 7.0e-59 231.1 123 86.2
HanXRQChr14g0427511 Helianthus annuus HOM05D005558 ORTHO05D006832 1.6e-58 229.9 136 79.4
Lj4C814G4 Lonicera japonica HOM05D005558 ORTHO05D006832 2.0e-58 229.6 169 68.0
ECA238G0376 Erigeron canadensis HOM05D005558 ORTHO05D006832 4.5e-58 228.4 126 81.7
Haze_22894 Corylus avellana HOM05D005558 ORTHO05D006832 5.9e-58 228.0 188 64.4
Nitab4.5_0001309g0160 Nicotiana tabacum HOM05D005558 ORTHO05D006832 1.3e-57 226.9 127 78.7
MELO3C017079.2 Cucumis melo HOM05D005558 ORTHO05D006832 2.3e-57 226.1 118 85.6
BolC5t30678H Brassica oleracea HOM05D000370 ORTHO05D006832 3.8e-57 225.3 140 76.4
Dinv05517 Davidia involucrata HOM05D005558 ORTHO05D006832 5.0e-57 224.9 154 76.6
AUR62041000 Chenopodium quinoa HOM05D005558 ORTHO05D006832 1.1e-56 223.8 176 64.8
Cre17.g739300 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 2.6e-53 212.6 140 67.1
SGA_v2.0_scaffold25G11031 Striga asiatica HOM05D005558 ORTHO05D006832 3.7e-52 208.8 156 65.4
Prupe.5G000700 Prunus persica HOM05D005558 ORTHO05D006832 7.0e-51 204.5 120 79.2
Phvul.009G240200 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 1.6e-50 203.4 151 68.9
Os06g0638200 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 4.3e-48 195.3 99 87.9
VMungo0251G0776 Vigna mungo HOM05D005558 ORTHO05D006832 1.1e-46 190.7 110 80.0
vmacro21735 Vaccinium macrocarpon HOM05D005558 ORTHO05D006832 3.0e-41 172.6 148 64.2
SMO203G0115 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 6.6e-41 171.4 140 55.7
SEGI_39286 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 3.3e-40 169.1 151 53.6
Pp3c2_25680 Physcomitrium patens HOM05D005558 ORTHO05D006832 1.6e-39 166.8 188 46.3
TAR376G0283 Trochodendron aralioides HOM05D005558 ORTHO05D006832 1.4e-38 163.7 94 81.9
Mapoly0065s0101 Marchantia polymorpha HOM05D005558 ORTHO05D006832 4.0e-38 162.2 140 55.0
Oeu000735.2 Olea europaea HOM05D005558 ORTHO05D006832 6.8e-38 161.4 98 76.5
CDE04G3086 Ceratophyllum demersum HOM05D000433 ORTHO05D000443 8.9e-38 161.0 188 46.8
Cre01.g043100 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 5.8e-37 158.3 168 49.4
Peaxi162Scf00064g01422 Petunia axillaris HOM05D005558 ORTHO05D006832 2.2e-36 156.4 120 61.7
SalBow6G6347 Salvia bowleyana HOM05D005558 ORTHO05D006832 7.1e-35 151.4 153 52.3
Cfa023908 Carpinus fangiana HOM05D005558 ORTHO05D006832 2.1e-34 149.8 183 43.2
CBR_g570 Chara braunii HOM05D005558 ORTHO05D006832 3.6e-31 139.0 85 72.9
AL8G17720 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 2.2e-28 129.8 72 86.1
AL5G16180 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 1.6e-26 123.6 70 84.3
Aa31LG7G5210 Aethionema arabicum HOM05D005558 ORTHO05D006832 1.1e-24 117.5 188 41.0
C05p19780 Brassica napus HOM05D005558 ORTHO05D006832 1.9e-24 116.7 59 83.1
MCO09G054 Micromonas commoda HOM05D005558 ORTHO05D006832 2.5e-24 116.3 151 42.4
HPP92_021704 Vanilla planifolia HOM05D005558 ORTHO05D006832 1.1e-22 110.9 118 46.6
BcaC07g39073 Brassica carinata HOM05D005558 ORTHO05D006832 2.2e-20 103.2 53 84.9
Cpa.g.sc36.94 Carica papaya HOM05D005558 ORTHO05D006832 2.5e-16 89.7 122 48.4
AagrBONN_evm.TU.Sc2ySwM_344.2923 Anthoceros agrestis HOM05D005558 ORTHO05D006832 8.1e-15 84.7 77 54.5
PRCOL_00001425 Prasinoderma coloniale HOM05D005558 ORTHO05D006832 3.8e-12 75.9 153 32.0
DCAR_022964 Daucus carota HOM05D005558 ORTHO05D006832 5.4e-11 72.0 84 50.0
Cpa.g.sc36.93 Carica papaya HOM05D005558 ORTHO05D006832 6.0e-10 68.6 31 87.1
Cre09.g396850 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D034498 1.3e-09 67.4 176 28.4
MCO09G751 Micromonas commoda HOM05D005558 ORTHO05D034498 2.8e-07 59.7 143 29.4


User provided reference genes

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