Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G126900 Carya illinoinensis HOM05D005784 ORTHO05D019705 2.7e-28 127.9 60 100.0
Cpa.g.sc57.41 Carica papaya HOM05D005784 ORTHO05D007803 8.6e-11 69.7 38 81.6
PGR042G0128 Punica granatum HOM05D005784 ORTHO05D007803 1.5e-10 68.9 40 77.5
CSS0010584 Camellia sinensis var. sinensis HOM05D005784 ORTHO05D007803 1.9e-10 68.6 37 83.8
FAN23G2435 Fragaria x ananassa HOM05D005784 ORTHO05D007803 1.9e-10 68.6 40 75.0
QL09p037402 Quercus lobata HOM05D005784 ORTHO05D007803 1.9e-10 68.6 38 81.6
Aqoxy2G02413 Aquilegia oxysepala HOM05D005784 ORTHO05D007803 2.5e-10 68.2 40 77.5
Duzib138G0454 Durio zibethinus HOM05D005784 ORTHO05D007803 2.5e-10 68.2 40 77.5
vmacro15092 Vaccinium macrocarpon HOM05D005784 ORTHO05D007803 2.5e-10 68.2 40 77.5
Cfa004924 Carpinus fangiana HOM05D000351 ORTHO05D007803 3.3e-10 67.8 40 77.5
CiPaw.08G082400 Carya illinoinensis HOM05D005784 ORTHO05D007803 3.3e-10 67.8 40 80.0
Haze_05164 Corylus avellana HOM05D005784 ORTHO05D007803 3.3e-10 67.8 40 77.5
Rhsim01G0293700 Rhododendron simsii HOM05D005784 ORTHO05D007803 4.3e-10 67.4 38 78.9
Actinidia25875 Actinidia chinensis HOM05D005784 ORTHO05D007803 5.6e-10 67.0 40 75.0
DCAR_002944 Daucus carota HOM05D005784 ORTHO05D007803 5.6e-10 67.0 40 75.0
Gohir.A11G105900 Gossypium hirsutum HOM05D005784 ORTHO05D007803 5.6e-10 67.0 40 75.0
Gohir.D11G110800 Gossypium hirsutum HOM05D005784 ORTHO05D007803 5.6e-10 67.0 40 75.0
Gorai.007G118500 Gossypium raimondii HOM05D005784 ORTHO05D007803 5.6e-10 67.0 40 75.0
TAR362G0637 Trochodendron aralioides HOM05D005784 ORTHO05D007803 5.6e-10 67.0 40 75.0
TAR362G1337 Trochodendron aralioides HOM05D005784 ORTHO05D007803 5.6e-10 67.0 40 75.0
CSS0041482 Camellia sinensis var. sinensis HOM05D005784 ORTHO05D019705 7.3e-10 66.6 34 85.3
Carub.0006s3555 Capsella rubella HOM05D005784 ORTHO05D007803 7.3e-10 66.6 40 77.5
Lalb_Chr06g0167151 Lupinus albus HOM05D005784 ORTHO05D007803 7.3e-10 66.6 40 75.0
DCAR_005710 Daucus carota HOM05D005784 ORTHO05D007803 9.5e-10 66.2 38 76.3
Dinv12073 Davidia involucrata HOM05D005784 ORTHO05D007803 9.5e-10 66.2 40 72.5
Oeu052593.2 Olea europaea HOM05D005784 ORTHO05D007803 9.5e-10 66.2 40 75.0
Psat6g157920 Pisum sativum HOM05D005784 ORTHO05D007803 9.5e-10 66.2 40 75.0
Potri.002G185400 Populus trichocarpa HOM05D005784 ORTHO05D007803 9.5e-10 66.2 38 76.3
Thecc.01G327300 Theobroma cacao HOM05D005784 ORTHO05D007803 9.5e-10 66.2 38 78.9
TPR.G3030 Trifolium pratense HOM05D005784 ORTHO05D007803 9.5e-10 66.2 40 75.0
AL6G51690 Arabidopsis lyrata HOM05D005784 ORTHO05D007803 1.2e-09 65.9 40 75.0
FvH4_1g26110 Fragaria vesca HOM05D005784 ORTHO05D007803 1.2e-09 65.9 40 72.5
FAN19G2824 Fragaria x ananassa HOM05D005784 ORTHO05D007803 1.2e-09 65.9 40 72.5
FAN26G0124 Fragaria x ananassa HOM05D005784 ORTHO05D007803 1.2e-09 65.9 40 72.5
Prupe.3G001200 Prunus persica HOM05D005784 ORTHO05D007803 1.2e-09 65.9 40 72.5
RcHm_v2.0_Chr3g0485611 Rosa chinensis HOM05D005784 ORTHO05D007803 1.2e-09 65.9 40 72.5
arahy.Tifrunner.gnm1.ann1.7C5766 Arachis hypogaea HOM05D005784 ORTHO05D007803 1.6e-09 65.5 38 76.3
arahy.Tifrunner.gnm1.ann1.AZ9DWX Arachis hypogaea HOM05D005784 ORTHO05D007803 1.6e-09 65.5 38 76.3
Lj5g0003944 Lotus japonicus HOM05D005784 ORTHO05D007803 1.6e-09 65.5 40 72.5
MBI18_g03858_MAGBIO Magnolia biondii HOM05D005784 ORTHO05D007803 1.6e-09 65.5 40 72.5
TWI59G1466 Tripterygium wilfordii HOM05D005784 ORTHO05D007803 1.6e-09 65.5 40 75.0
CSS0039748 Camellia sinensis var. sinensis HOM05D005784 ORTHO05D019705 2.1e-09 65.1 34 82.4
Ca_10232_v3 Cicer arietinum L. HOM05D005784 ORTHO05D007803 2.1e-09 65.1 40 72.5
FAN28G2925 Fragaria x ananassa HOM05D005784 ORTHO05D007803 2.1e-09 65.1 38 73.7
Aqoxy5G02861 Aquilegia oxysepala HOM05D005784 ORTHO05D007803 2.8e-09 64.7 40 75.0
Ciclev10019335m.g Citrus clementina HOM05D005784 ORTHO05D007803 2.8e-09 64.7 36 80.6
MD09G1291600 Malus domestica HOM05D005784 ORTHO05D007803 2.8e-09 64.7 40 72.5
Eucgr.A00993 Eucalyptus grandis HOM05D005784 ORTHO05D007803 3.6e-09 64.3 40 72.5
Sc05g0000040 Simmondsia chinensis HOM05D005784 ORTHO05D007803 3.6e-09 64.3 38 73.7
unitig_90.g27449 Utricularia gibba HOM05D001090 ORTHO05D007803 3.6e-09 64.3 40 72.5
GSVIVG01028229001 Vitis vinifera HOM05D005784 ORTHO05D007803 3.6e-09 64.3 38 73.7
BcaB01g02124 Brassica carinata HOM05D005784 ORTHO05D007803 4.7e-09 63.9 40 72.5
A09p01190 Brassica napus HOM05D005784 ORTHO05D007803 4.7e-09 63.9 40 72.5
BraA09t35789Z Brassica rapa HOM05D005784 ORTHO05D007803 4.7e-09 63.9 40 72.5
COL.COLO4_23104 Corchorus olitorius HOM05D005784 ORTHO05D007803 4.7e-09 63.9 40 72.5
Glyma.02G006500 Glycine max HOM05D005784 ORTHO05D007803 4.7e-09 63.9 38 76.3
Glyma.10G139300 Glycine max HOM05D005784 ORTHO05D007803 4.7e-09 63.9 38 76.3
Lalb_Chr02g0147261 Lupinus albus HOM05D005784 ORTHO05D007803 4.7e-09 63.9 34 79.4
Manes.05G007100 Manihot esculenta HOM05D005784 ORTHO05D007803 4.7e-09 63.9 38 73.7
THA.LOC104815912 Tarenaya hassleriana HOM05D005784 ORTHO05D007803 4.7e-09 63.9 40 72.5
Zm00001eb340520 Zea mays HOM05D005784 ORTHO05D007803 4.7e-09 63.9 40 70.0
EL10Ac1g01825 Beta vulgaris HOM05D005784 ORTHO05D007803 6.2e-09 63.5 38 71.1
Phvul.007G208100 Phaseolus vulgaris HOM05D005784 ORTHO05D007803 6.2e-09 63.5 38 76.3
SHI19972 Sapria himalayana HOM05D005784 ORTHO05D000023 6.2e-09 63.5 37 73.0
VMungo0720G0010 Vigna mungo HOM05D005784 ORTHO05D007803 6.2e-09 63.5 38 73.7
ATR0693G326 Amborella trichopoda HOM05D005784 ORTHO05D007803 8.1e-09 63.2 55 58.2
BcaC04g24079 Brassica carinata HOM05D005784 ORTHO05D007803 8.1e-09 63.2 40 72.5
C09p01280 Brassica napus HOM05D005784 ORTHO05D007803 8.1e-09 63.2 40 72.5
BolC9t53062H Brassica oleracea HOM05D005784 ORTHO05D007803 8.1e-09 63.2 40 72.5
CsaV3_5G036980 Cucumis sativus L. HOM05D005784 ORTHO05D007803 8.1e-09 63.2 40 72.5
Duzib133G0630 Durio zibethinus HOM05D005784 ORTHO05D007803 8.1e-09 63.2 40 72.5
Lsat_1_v5_gn_8_167141 Lactuca sativa HOM05D005784 ORTHO05D007803 8.1e-09 63.2 38 71.1
AT4G01660 Arabidopsis thaliana HOM05D005784 ORTHO05D007803 1.1e-08 62.8 40 72.5
CARHR250010 Cardamine hirsuta HOM05D005784 ORTHO05D007803 1.1e-08 62.8 40 72.5
HanXRQChr06g0167951 Helianthus annuus HOM05D005784 ORTHO05D007803 1.1e-08 62.8 38 71.1
Atru.chr5.839 Acer truncatum HOM05D005784 ORTHO05D007803 1.4e-08 62.4 36 75.0
MELO3C026475.2 Cucumis melo HOM05D005784 ORTHO05D007803 1.4e-08 62.4 40 72.5
Migut.D00007 Erythranthe guttata HOM05D005784 ORTHO05D007803 1.4e-08 62.4 40 70.0
Migut.N00893 Erythranthe guttata HOM05D005784 ORTHO05D007803 1.4e-08 62.4 40 70.0
MSTRG.18053 Avicennia marina HOM05D005784 ORTHO05D007803 1.8e-08 62.0 40 70.0
Cc01_g21720 Coffea canephora HOM05D005784 ORTHO05D007803 2.3e-08 61.6 40 70.0
ECA236G2058 Erigeron canadensis HOM05D006834 ORTHO05D007803 2.3e-08 61.6 38 71.1
Medtr1g085610 Medicago truncatula HOM05D005784 ORTHO05D007803 2.3e-08 61.6 40 70.0
Nn4g25319 Nelumbo nucifera HOM05D005784 ORTHO05D007803 2.3e-08 61.6 40 70.0
Peaxi162Scf00309g00620 Petunia axillaris HOM05D005784 ORTHO05D007803 2.3e-08 61.6 40 70.0
Sed0007139 Sechium edule HOM05D005784 ORTHO05D007803 2.3e-08 61.6 40 70.0
HPP92_016969 Vanilla planifolia HOM05D005784 ORTHO05D007803 2.3e-08 61.6 40 67.5
HPP92_017034 Vanilla planifolia HOM05D005784 ORTHO05D007803 2.3e-08 61.6 40 67.5
CDE09G0629 Ceratophyllum demersum HOM05D005784 ORTHO05D007803 3.1e-08 61.2 40 70.0
CDE09G1340 Ceratophyllum demersum HOM05D005784 ORTHO05D007803 3.1e-08 61.2 40 70.0
AUR62035184 Chenopodium quinoa HOM05D005784 ORTHO05D007803 3.1e-08 61.2 38 68.4
AUR62043318 Chenopodium quinoa HOM05D005784 ORTHO05D007803 3.1e-08 61.2 38 68.4
Nitab4.5_0003092g0090 Nicotiana tabacum HOM05D005784 ORTHO05D007803 3.1e-08 61.2 40 70.0
Nitab4.5_0008825g0010 Nicotiana tabacum HOM05D005784 ORTHO05D007803 3.1e-08 61.2 40 70.0
Solyc01g068640.3 Solanum lycopersicum HOM05D005784 ORTHO05D007803 3.1e-08 61.2 40 70.0
Sopen01g030570 Solanum pennellii HOM05D005784 ORTHO05D007803 3.1e-08 61.2 40 70.0
Thhalv10028510m.g Eutrema salsugineum HOM05D005784 ORTHO05D007803 4.0e-08 60.8 40 70.0
Sp6g01550 Schrenkiella parvula HOM05D005784 ORTHO05D007803 4.0e-08 60.8 40 70.0
PSO170G5067 Papaver somniferum HOM05D005784 ORTHO05D007803 5.2e-08 60.5 38 71.1
PSO357G0013 Papaver somniferum HOM05D005784 ORTHO05D007803 5.2e-08 60.5 38 71.1
CAN.G179.27 Capsicum annuum HOM05D005784 ORTHO05D007803 1.2e-07 59.3 40 67.5
Mapoly0064s0089 Marchantia polymorpha HOM05D005784 ORTHO05D007803 1.5e-07 58.9 40 65.0
SGA_v2.0_scaffold417G51242 Striga asiatica HOM05D005784 ORTHO05D007803 1.5e-07 58.9 40 65.0
Aa31LG5G1370 Aethionema arabicum HOM05D005784 ORTHO05D007803 2.6e-07 58.2 40 65.0
CANSAT25G3716 Cannabis sativa HOM05D005784 ORTHO05D007803 2.6e-07 58.2 40 65.0
Migut.N00894 Erythranthe guttata HOM05D005784 ORTHO05D007803 3.4e-07 57.8 34 67.6
CSS0010884 Camellia sinensis var. sinensis HOM05D005784 ORTHO05D019705 4.4e-07 57.4 34 73.5
SEGI_05697 Sequoiadendron giganteum HOM05D005784 ORTHO05D007803 1.3e-06 55.8 38 65.8


User provided reference genes

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