Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G126300 Carya illinoinensis HOM05D005434 ORTHO05D006412 0.0e+00 1139.4 611 100.0
CiPaw.08G081800 Carya illinoinensis HOM05D005434 ORTHO05D006412 2.6e-171 606.3 595 60.5
Haze_05156 Corylus avellana HOM05D005434 ORTHO05D006412 1.3e-170 604.0 617 60.9
QL12p035062 Quercus lobata HOM05D005434 ORTHO05D006412 3.4e-155 552.7 610 56.9
Prupe.3G001600 Prunus persica HOM05D005434 ORTHO05D006412 7.2e-105 385.6 640 42.0
Atru.chr5.851 Acer truncatum HOM05D005434 ORTHO05D006412 1.4e-103 381.3 614 41.9
Duzib133G0025 Durio zibethinus HOM05D005434 ORTHO05D006412 9.5e-97 358.6 614 41.9
Manes.05G008100 Manihot esculenta HOM05D005434 ORTHO05D006412 4.0e-95 353.2 615 40.5
Potri.002G186200 Populus trichocarpa HOM05D005434 ORTHO05D006412 1.2e-91 341.7 668 38.0
MD09G1291300 Malus domestica HOM05D005434 ORTHO05D006412 5.6e-89 332.8 649 39.6
Duzib138G0614 Durio zibethinus HOM05D005434 ORTHO05D006412 2.8e-88 330.5 611 40.6
Ciclev10019510m.g Citrus clementina HOM05D005434 ORTHO05D006412 4.7e-88 329.7 600 39.2
Potri.014G111500 Populus trichocarpa HOM05D005434 ORTHO05D006412 6.1e-88 329.3 662 39.3
GSVIVG01028240001 Vitis vinifera HOM05D005434 ORTHO05D006412 2.4e-84 317.4 598 41.0
Thecc.01G326300 Theobroma cacao HOM05D005434 ORTHO05D006412 4.6e-83 313.2 603 38.6
CSS0010810 Camellia sinensis var. sinensis HOM05D005434 ORTHO05D006412 5.0e-82 309.7 610 39.0
RcHm_v2.0_Chr3g0485651 Rosa chinensis HOM05D005434 ORTHO05D006412 8.6e-82 308.9 640 36.9
MD17G1286100 Malus domestica HOM05D005434 ORTHO05D006412 1.9e-81 307.8 641 37.4
Dinv12078 Davidia involucrata HOM05D005434 ORTHO05D006412 2.1e-80 304.3 482 42.7
Sabra14G0081900 Salix brachista HOM05D005434 ORTHO05D006412 2.4e-76 290.8 654 35.9
Gohir.A07G131800 Gossypium hirsutum HOM05D005434 ORTHO05D006412 3.0e-74 283.9 606 38.4
Gorai.001G148200 Gossypium raimondii HOM05D005434 ORTHO05D006412 7.3e-73 279.3 603 38.3
Gohir.D07G136100 Gossypium hirsutum HOM05D005434 ORTHO05D006412 3.6e-72 276.9 603 38.1
COL.COLO4_23119 Corchorus olitorius HOM05D005434 ORTHO05D006412 1.1e-71 275.4 617 36.5
FAN19G2204 Fragaria x ananassa HOM05D005434 ORTHO05D006412 1.8e-71 274.6 702 32.9
FvH4_1g26160 Fragaria vesca HOM05D005434 ORTHO05D006412 6.8e-71 272.7 702 32.8
Actinidia20964 Actinidia chinensis HOM05D005434 ORTHO05D006412 1.2e-70 271.9 602 37.0
Gohir.A11G105400 Gossypium hirsutum HOM05D005434 ORTHO05D006412 2.9e-69 267.3 669 33.5
Gorai.007G117900 Gossypium raimondii HOM05D005434 ORTHO05D006412 2.9e-69 267.3 666 33.5
Gohir.D11G110300 Gossypium hirsutum HOM05D005434 ORTHO05D006412 2.4e-68 264.2 664 33.3
Rhsim02G0256300 Rhododendron simsii HOM05D005434 ORTHO05D006412 9.2e-68 262.3 593 37.4
TWI23G0760 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 3.0e-66 257.3 673 32.8
TWI14G0253 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 6.6e-66 256.1 665 33.8
Sed0005889 Sechium edule HOM05D005434 ORTHO05D006412 8.1e-64 249.2 610 34.8
TAR636G0087 Trochodendron aralioides HOM05D005434 ORTHO05D006412 1.2e-62 245.4 615 34.6
FAN23G2884 Fragaria x ananassa HOM05D005434 ORTHO05D006412 1.7e-61 241.5 693 31.6
CsaV3_6G012840 Cucumis sativus L. HOM05D005434 ORTHO05D006412 2.9e-61 240.7 627 34.9
FAN28G1136 Fragaria x ananassa HOM05D005434 ORTHO05D006412 4.9e-61 240.0 693 31.3
MELO3C013628.2 Cucumis melo HOM05D005434 ORTHO05D006412 3.2e-60 237.3 620 35.0
ClCG02G017720 Citrullus lanatus HOM05D005434 ORTHO05D006412 1.2e-59 235.3 613 34.7
Lj1A7T44 Lonicera japonica HOM05D005434 ORTHO05D006412 5.1e-58 229.9 535 35.3
Sed0026347 Sechium edule HOM05D005434 ORTHO05D006412 8.7e-58 229.2 621 33.7
TAR365G0925 Trochodendron aralioides HOM05D005434 ORTHO05D006412 1.5e-57 228.4 602 34.9
FAN26G2209 Fragaria x ananassa HOM05D005434 ORTHO05D006412 2.1e-56 224.6 675 31.3
Glyma.02G007100 Glycine max HOM05D005434 ORTHO05D006412 3.6e-56 223.8 585 32.8
Dinv33176 Davidia involucrata HOM05D005434 ORTHO05D006412 1.3e-53 215.3 452 36.7
arahy.Tifrunner.gnm1.ann1.G6BN46 Arachis hypogaea HOM05D005434 ORTHO05D006412 1.7e-53 214.9 602 31.1
arahy.Tifrunner.gnm1.ann1.9BA1LG Arachis hypogaea HOM05D005434 ORTHO05D006412 2.9e-53 214.2 596 30.9
Oeu052591.1 Olea europaea HOM05D005434 ORTHO05D006412 3.3e-49 200.7 593 32.9
Lj5g0001301 Lotus japonicus HOM05D005434 ORTHO05D006412 5.6e-49 199.9 625 31.2
Glyma.10G138700 Glycine max HOM05D005434 ORTHO05D006412 6.2e-48 196.4 641 30.0
Cpa.g.sc57.27 Carica papaya HOM05D005434 ORTHO05D006412 5.3e-47 193.4 617 31.3
Phvul.007G208600 Phaseolus vulgaris HOM05D005434 ORTHO05D006412 8.4e-45 186.0 609 30.4
CANSAT25G2989 Cannabis sativa HOM05D005434 ORTHO05D006412 4.2e-44 183.7 710 29.2
Lalb_Chr02g0147191 Lupinus albus HOM05D005434 ORTHO05D006412 7.1e-44 183.0 615 29.9
SHI34042 Sapria himalayana HOM05D005434 ORTHO05D006412 2.7e-43 181.0 620 31.1
DCAR_002941 Daucus carota HOM05D005434 ORTHO05D006412 6.0e-43 179.9 580 30.7
Actinidia25873 Actinidia chinensis HOM05D005434 ORTHO05D006412 5.1e-42 176.8 568 31.2
MBI19_g04828_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 1.1e-41 175.6 437 33.4
Psat6g158560 Pisum sativum HOM05D005434 ORTHO05D006412 6.2e-40 169.9 609 30.2
MBI18_g03842_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 1.8e-39 168.3 628 32.2
PGR142G2929 Punica granatum HOM05D005434 ORTHO05D006412 2.4e-39 167.9 583 31.0
Nn3g21972 Nelumbo nucifera HOM05D005434 ORTHO05D006412 1.3e-37 162.2 683 29.6
Medtr1g085710 Medicago truncatula HOM05D005434 ORTHO05D006412 2.2e-37 161.4 608 29.9
Eucgr.K00557 Eucalyptus grandis HOM05D005434 ORTHO05D006412 2.9e-37 161.0 491 30.1
TPR.G3083 Trifolium pratense HOM05D005434 ORTHO05D006412 2.9e-37 161.0 588 30.6
DCAR_005712 Daucus carota HOM05D005434 ORTHO05D006412 2.5e-36 157.9 464 33.6
VMungo0720G1215 Vigna mungo HOM05D005434 ORTHO05D006412 7.1e-36 156.4 573 29.8
Aa31LG1G28350 Aethionema arabicum HOM05D005434 ORTHO05D006412 2.5e-33 147.9 616 30.2
AT2G46980 Arabidopsis thaliana HOM05D005434 ORTHO05D006412 7.4e-33 146.4 603 28.4
Aqoxy2G02439 Aquilegia oxysepala HOM05D005434 ORTHO05D006412 5.3e-31 140.2 446 32.3
Cc01_g21750 Coffea canephora HOM05D005434 ORTHO05D006412 2.0e-30 138.3 429 29.1
CARHR142350 Cardamine hirsuta HOM05D005434 ORTHO05D006412 3.4e-30 137.5 493 29.0
AL4G46460 Arabidopsis lyrata HOM05D005434 ORTHO05D006412 5.8e-30 136.7 600 28.3
Sp4g28980 Schrenkiella parvula HOM05D005434 ORTHO05D006412 5.8e-30 136.7 492 28.7
Thhalv10001318m.g Eutrema salsugineum HOM05D005434 ORTHO05D006412 3.8e-29 134.0 599 29.4
Ca_10237_v3 Cicer arietinum L. HOM05D005434 ORTHO05D006412 1.4e-28 132.1 571 28.0
Carub.0004s2971 Capsella rubella HOM05D005434 ORTHO05D006412 1.2e-27 129.0 607 26.4
BraA05t19085Z Brassica rapa HOM05D005434 ORTHO05D006412 1.0e-26 125.9 612 28.6
A05p00820 Brassica napus HOM05D005434 ORTHO05D006412 3.9e-26 124.0 612 28.3
Migut.D00008 Erythranthe guttata HOM05D005434 ORTHO05D006412 5.1e-26 123.6 608 27.3
PSO210G4596 Papaver somniferum HOM05D005434 ORTHO05D006412 2.2e-24 118.2 643 26.6
BolC4t21751H Brassica oleracea HOM05D005434 ORTHO05D006412 2.4e-23 114.8 617 27.2
C04p00990 Brassica napus HOM05D005434 ORTHO05D006412 3.1e-23 114.4 597 27.1
BcaC02g12826 Brassica carinata HOM05D005434 ORTHO05D006412 6.9e-23 113.2 497 27.8
Peaxi162Scf00309g00625 Petunia axillaris HOM05D005434 ORTHO05D006412 1.0e-21 109.4 627 27.4
Nitab4.5_0000222g0380 Nicotiana tabacum HOM05D005434 ORTHO05D006412 3.2e-20 104.4 629 27.5
PGSC0003DMG400001122 Solanum tuberosum HOM05D005434 ORTHO05D006412 5.5e-20 103.6 626 26.8
Solyc01g079080.3 Solanum lycopersicum HOM05D005434 ORTHO05D006412 9.4e-20 102.8 413 30.3
Sopen01g030590 Solanum pennellii HOM05D005434 ORTHO05D006412 1.2e-19 102.4 478 28.5
CAN.G179.30 Capsicum annuum HOM05D005434 ORTHO05D006412 3.9e-18 97.4 633 26.7
Dinv33187 Davidia involucrata HOM05D005434 ORTHO05D006412 1.1e-17 95.9 216 36.1
Nitab4.5_0003092g0060 Nicotiana tabacum HOM05D005434 ORTHO05D006412 4.3e-17 94.0 635 27.4
ECA247G2130 Erigeron canadensis HOM05D005434 ORTHO05D008082 2.2e-16 91.7 613 25.6
FAN12G4172 Fragaria x ananassa HOM05D005434 ORTHO05D006412 4.8e-16 90.5 140 42.1
Actinidia21335 Actinidia chinensis HOM05D005434 ORTHO05D006412 5.3e-15 87.0 118 44.1
SGA_v2.0_scaffold417G51248 Striga asiatica HOM05D005434 ORTHO05D006412 9.1e-15 86.3 304 32.9
AUR62024551 Chenopodium quinoa HOM05D005434 ORTHO05D006412 1.2e-14 85.9 419 27.7
Sc17g0000070 Simmondsia chinensis HOM05D005434 ORTHO05D006412 9.4e-12 76.3 438 25.1
EL10Ac4g10377 Beta vulgaris HOM05D005434 ORTHO05D006412 2.1e-11 75.1 417 26.4
Lsat_1_v5_gn_9_7120 Lactuca sativa HOM05D005434 ORTHO05D006412 2.7e-11 74.7 356 27.8
FvH4_4g08230 Fragaria vesca HOM05D005434 ORTHO05D006412 4.7e-11 73.9 113 41.6
SGA_v2.0_scaffold310G48189 Striga asiatica HOM05D005434 ORTHO05D006412 4.7e-11 73.9 333 31.2
AUR62011691 Chenopodium quinoa HOM05D005434 ORTHO05D006412 7.9e-11 73.2 434 27.0
Dinv12077 Davidia involucrata HOM05D005434 ORTHO05D006412 1.4e-10 72.4 81 53.1
FAN18G2209 Fragaria x ananassa HOM05D005434 ORTHO05D006412 1.8e-10 72.0 113 43.4
Sc17g0000060 Simmondsia chinensis HOM05D005434 ORTHO05D006412 3.9e-10 70.9 405 25.9
BcaC02g12619 Brassica carinata HOM05D005434 ORTHO05D006412 5.1e-10 70.5 436 25.9
HanXRQChr10g0286491 Helianthus annuus HOM05D005434 ORTHO05D006412 5.3e-07 60.5 255 27.8
vmacro08149 Vaccinium macrocarpon HOM05D005434 ORTHO05D006412 1.2e-06 59.3 180 33.3


User provided reference genes

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