Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G122200 Carya illinoinensis HOM05D008942 ORTHO05D009202 2.4e-63 245.4 124 100.0
Duzib138G1053 Durio zibethinus HOM05D008942 ORTHO05D009202 6.5e-21 104.4 126 50.8
CiPaw.08G085000 Carya illinoinensis HOM05D008942 ORTHO05D009202 4.2e-20 101.7 149 50.3
QL12p033984 Quercus lobata HOM05D008942 ORTHO05D009202 1.2e-19 100.1 126 52.4
QL12p033964 Quercus lobata HOM05D008942 ORTHO05D009202 1.6e-19 99.8 123 53.7
Sabra14G0085900 Salix brachista HOM05D008942 ORTHO05D009202 2.7e-19 99.0 123 50.4
Cfa004867 Carpinus fangiana HOM05D008942 ORTHO05D009202 8.8e-18 94.0 131 47.3
Potri.014G115800 Populus trichocarpa HOM05D008942 ORTHO05D009202 8.8e-18 94.0 125 48.8
Thecc.01G321000 Theobroma cacao HOM05D008942 ORTHO05D009202 1.5e-17 93.2 122 49.2
Potri.002G190700 Populus trichocarpa HOM05D008942 ORTHO05D009202 1.1e-15 87.0 126 47.6
Sabra02G0164800 Salix brachista HOM05D008942 ORTHO05D009202 1.4e-15 86.7 125 44.8
QL12p034826 Quercus lobata HOM05D008942 ORTHO05D009202 5.4e-15 84.7 124 50.0
CiPaw.07G122100 Carya illinoinensis HOM05D008942 ORTHO05D009202 7.0e-15 84.3 131 48.1
CiPaw.08G085100 Carya illinoinensis HOM05D008942 ORTHO05D009202 2.7e-14 82.4 131 47.3
Haze_05107 Corylus avellana HOM05D008942 ORTHO05D009202 3.8e-13 78.6 91 54.9
Cpa.g.sc1096.1 Carica papaya HOM05D008942 ORTHO05D009202 7.2e-12 74.3 81 58.0
Gohir.D11G112000 Gossypium hirsutum HOM05D008942 ORTHO05D009202 2.7e-11 72.4 131 40.5
Manes.01G232300 Manihot esculenta HOM05D008942 ORTHO05D009202 2.7e-11 72.4 128 44.5
MD17G1279600 Malus domestica HOM05D008942 ORTHO05D009202 3.6e-11 72.0 104 42.3
Gohir.D08G142200 Gossypium hirsutum HOM05D008942 ORTHO05D009202 4.7e-11 71.6 133 42.9
Gorai.004G146500 Gossypium raimondii HOM05D008942 ORTHO05D009202 4.7e-11 71.6 133 41.4
Atru.chr5.920 Acer truncatum HOM05D008942 ORTHO05D009202 6.1e-11 71.2 148 40.5
Gorai.007G120200 Gossypium raimondii HOM05D008942 ORTHO05D009202 8.0e-11 70.9 130 40.0
Haze_05106 Corylus avellana HOM05D008942 ORTHO05D009202 1.0e-10 70.5 106 45.3
Gohir.A11G107000 Gossypium hirsutum HOM05D008942 ORTHO05D009202 3.0e-10 68.9 131 39.7
Manes.01G232200 Manihot esculenta HOM05D008942 ORTHO05D009202 4.0e-10 68.6 132 43.2
Cfa004866 Carpinus fangiana HOM05D008942 ORTHO05D009202 6.8e-10 67.8 105 43.8
CiPaw.08G152800 Carya illinoinensis HOM05D009264 ORTHO05D009202 8.8e-10 67.4 122 39.3
Lj5g0018092 Lotus japonicus HOM05D008942 ORTHO05D009202 8.8e-10 67.4 137 38.7
Ciclev10022668m.g Citrus clementina HOM05D008942 ORTHO05D009202 2.6e-09 65.9 124 41.9
Phvul.007G211500 Phaseolus vulgaris HOM05D024167 ORTHO05D009202 2.6e-09 65.9 125 38.4
TPR.G3019 Trifolium pratense HOM05D008942 ORTHO05D009202 4.4e-09 65.1 133 37.6
CSS0022072 Camellia sinensis var. sinensis HOM05D009264 ORTHO05D009202 5.7e-09 64.7 119 39.5
Ciclev10013538m.g Citrus clementina HOM05D009264 ORTHO05D009202 5.7e-09 64.7 139 38.8
COL.COLO4_23172 Corchorus olitorius HOM05D008942 ORTHO05D009202 7.5e-09 64.3 157 32.5
Dinv33151 Davidia involucrata HOM05D008942 ORTHO05D009202 7.5e-09 64.3 96 40.6
TWI59G1203 Tripterygium wilfordii HOM05D008942 ORTHO05D009202 7.5e-09 64.3 116 37.9
CSS0039740 Camellia sinensis var. sinensis HOM05D009264 ORTHO05D009202 2.2e-08 62.8 119 37.8
RcHm_v2.0_Chr3g0457951 Rosa chinensis HOM05D009264 ORTHO05D009202 3.7e-08 62.0 118 36.4
FvH4_6g08100 Fragaria vesca HOM05D009264 ORTHO05D009202 1.1e-07 60.5 124 37.1
FAN14G2966 Fragaria x ananassa HOM05D009264 ORTHO05D009202 1.1e-07 60.5 124 37.1
TAR365G0423 Trochodendron aralioides HOM05D008325 ORTHO05D010336 1.1e-07 60.5 111 42.3
COL.COLO4_23173 Corchorus olitorius HOM05D008325 ORTHO05D010336 1.4e-07 60.1 115 37.4
Actinidia01668 Actinidia chinensis HOM05D009264 ORTHO05D009202 1.8e-07 59.7 102 33.3
Nn4g25439 Nelumbo nucifera HOM05D008325 ORTHO05D010336 1.8e-07 59.7 105 38.1
Duzib133G0176 Durio zibethinus HOM05D008325 ORTHO05D010336 2.4e-07 59.3 121 38.8
QL03p008780 Quercus lobata HOM05D009264 ORTHO05D009202 2.4e-07 59.3 70 47.1
QL03p013046 Quercus lobata HOM05D009264 ORTHO05D009202 2.4e-07 59.3 70 47.1
Thecc.05G327000 Theobroma cacao HOM05D021022 ORTHO05D009202 3.1e-07 58.9 109 41.3
VMungo0720G1850 Vigna mungo HOM05D024167 ORTHO05D009202 4.1e-07 58.5 120 35.8
Medtr1g086430 Medicago truncatula HOM05D024167 ORTHO05D009202 5.4e-07 58.2 89 40.4
Potri.005G006000 Populus trichocarpa HOM05D014622 ORTHO05D009202 7.0e-07 57.8 103 38.8
SalBow7G0413 Salvia bowleyana HOM05D009264 ORTHO05D009202 7.0e-07 57.8 123 35.0
Thecc.01G320800 Theobroma cacao HOM05D008325 ORTHO05D010336 7.0e-07 57.8 122 34.4
Actinidia35505 Actinidia chinensis HOM05D009264 ORTHO05D009202 9.2e-07 57.4 106 37.7
Potri.013G005300 Populus trichocarpa HOM05D014622 ORTHO05D009202 9.2e-07 57.4 102 36.3
TWI59G0258 Tripterygium wilfordii HOM05D008942 ORTHO05D009202 1.2e-06 57.0 128 37.5
Carub.0001s0152 Capsella rubella HOM05D010308 ORTHO05D012783 2.0e-06 56.2 117 37.6
Nn4g25441 Nelumbo nucifera HOM05D008325 ORTHO05D010336 2.7e-06 55.8 123 35.0
FAN09G1104 Fragaria x ananassa HOM05D009264 ORTHO05D009202 3.5e-06 55.5 124 35.5
Manes.01G232100 Manihot esculenta HOM05D008325 ORTHO05D010336 3.5e-06 55.5 120 35.0
Nn3g21851 Nelumbo nucifera HOM05D008325 ORTHO05D010336 3.5e-06 55.5 128 32.8
QL12p033939 Quercus lobata HOM05D008325 ORTHO05D010336 3.5e-06 55.5 113 36.3
Cfa006734 Carpinus fangiana HOM05D009264 ORTHO05D009202 4.5e-06 55.1 112 35.7
Nn3g21852 Nelumbo nucifera HOM05D008325 ORTHO05D010336 4.5e-06 55.1 111 36.0
Glyma.02G009400 Glycine max HOM05D024167 ORTHO05D009202 7.7e-06 54.3 126 34.9
Nn4g25438 Nelumbo nucifera HOM05D008942 ORTHO05D009202 7.7e-06 54.3 122 40.2


User provided reference genes

Program Settings