Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G114900 Carya illinoinensis HOM05D003790 ORTHO05D004481 1.9e-96 355.9 185 100.0
CiPaw.08G091700 Carya illinoinensis HOM05D003790 ORTHO05D004481 1.2e-63 246.9 188 72.9
Cfa005842 Carpinus fangiana HOM05D003790 ORTHO05D004481 7.6e-58 227.6 192 67.2
Haze_05008 Corylus avellana HOM05D003790 ORTHO05D004481 2.9e-57 225.7 187 67.4
Duzib138G1652 Durio zibethinus HOM05D003790 ORTHO05D004481 5.5e-56 221.5 188 61.7
TAR633G0094 Trochodendron aralioides HOM05D003790 ORTHO05D004481 6.0e-55 218.0 189 59.3
TAR633G1354 Trochodendron aralioides HOM05D003790 ORTHO05D004481 1.0e-54 217.2 189 59.3
Thecc.01G310000 Theobroma cacao HOM05D003790 ORTHO05D004481 9.6e-53 210.7 185 60.0
Rhsim13G0006400 Rhododendron simsii HOM05D003790 ORTHO05D004481 2.8e-52 209.1 195 52.8
Potri.002G198800 Populus trichocarpa HOM05D003790 ORTHO05D004481 4.8e-52 208.4 195 61.0
QL12p028945 Quercus lobata HOM05D003790 ORTHO05D004481 1.8e-51 206.5 177 65.0
Manes.01G225600 Manihot esculenta HOM05D003790 ORTHO05D004481 3.1e-51 205.7 181 61.3
Potri.014G123400 Populus trichocarpa HOM05D003790 ORTHO05D004481 3.1e-51 205.7 196 57.1
Phvul.007G216200 Phaseolus vulgaris HOM05D003790 ORTHO05D004481 2.6e-50 202.6 191 57.6
Sabra14G0091700 Salix brachista HOM05D003790 ORTHO05D004481 2.6e-50 202.6 187 57.8
VMungo0720G2360 Vigna mungo HOM05D003790 ORTHO05D004481 1.7e-49 199.9 192 55.7
Gohir.A07G127400 Gossypium hirsutum HOM05D003790 ORTHO05D004481 2.9e-49 199.1 190 58.9
PGSC0003DMG400037362 Solanum tuberosum HOM05D003790 ORTHO05D004481 5.0e-49 198.4 181 56.9
CAN.G69.5 Capsicum annuum HOM05D003790 ORTHO05D004481 6.5e-49 198.0 185 57.3
PGSC0003DMG400009002 Solanum tuberosum HOM05D003790 ORTHO05D004481 8.5e-49 197.6 180 61.7
Duzib133G0291 Durio zibethinus HOM05D003790 ORTHO05D004481 1.9e-48 196.4 184 59.2
Gorai.001G143000 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.9e-48 196.4 190 58.4
Lalb_Chr02g0146651 Lupinus albus HOM05D003790 ORTHO05D004481 5.5e-48 194.9 189 57.1
Eucgr.L02691 Eucalyptus grandis HOM05D003790 ORTHO05D004481 7.2e-48 194.5 190 57.4
Glyma.02G014300 Glycine max HOM05D003790 ORTHO05D004481 1.2e-47 193.7 194 53.6
Lalb_Chr06g0166611 Lupinus albus HOM05D003790 ORTHO05D004481 1.2e-47 193.7 186 57.5
Rhsim01G0289200 Rhododendron simsii HOM05D003790 ORTHO05D004481 1.6e-47 193.4 184 58.2
Aqoxy2G02808 Aquilegia oxysepala HOM05D003790 ORTHO05D004481 2.1e-47 193.0 189 51.9
Gohir.D07G131700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 2.7e-47 192.6 190 57.9
Medtr1g087710 Medicago truncatula HOM05D003790 ORTHO05D004481 2.7e-47 192.6 191 57.1
Nitab4.5_0017359g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 4.6e-47 191.8 190 54.7
Eucgr.E02370 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.1e-47 191.4 190 56.8
Nitab4.5_0000116g0070 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.0e-46 190.7 189 58.2
Peaxi162Scf00001g00263 Petunia axillaris HOM05D003790 ORTHO05D004481 1.3e-46 190.3 190 59.5
Glyma.10G015000 Glycine max HOM05D003790 ORTHO05D004481 2.3e-46 189.5 193 54.4
vmacro02415 Vaccinium macrocarpon HOM05D003790 ORTHO05D004481 2.3e-46 189.5 192 54.7
Ciclev10022416m.g Citrus clementina HOM05D003790 ORTHO05D004481 3.0e-46 189.1 188 61.7
Nn3g21628 Nelumbo nucifera HOM05D003790 ORTHO05D004481 3.0e-46 189.1 196 58.2
Nitab4.5_0010548g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 3.0e-46 189.1 183 58.5
Nitab4.5_0025993g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 3.9e-46 188.7 190 60.5
Cpa.g.sc18.4 Carica papaya HOM05D003790 ORTHO05D004481 6.7e-46 188.0 193 61.7
Peaxi162Scf00001g00262 Petunia axillaris HOM05D003790 ORTHO05D004481 6.7e-46 188.0 197 56.3
Sopen01g031440 Solanum pennellii HOM05D003790 ORTHO05D004481 1.9e-45 186.4 184 58.2
Sabra02G0159000 Salix brachista HOM05D003790 ORTHO05D004481 7.4e-45 184.5 198 55.1
Actinidia21012 Actinidia chinensis HOM05D003790 ORTHO05D004481 9.7e-45 184.1 172 58.1
Peaxi162Scf00001g00254 Petunia axillaris HOM05D003790 ORTHO05D004481 1.6e-44 183.3 191 56.0
Actinidia25835 Actinidia chinensis HOM05D003270 ORTHO05D003662 2.2e-44 183.0 172 57.6
Ca_10301_v3 Cicer arietinum L. HOM05D003790 ORTHO05D004481 2.2e-44 183.0 186 60.2
Sopen01g031450 Solanum pennellii HOM05D003790 ORTHO05D004481 2.8e-44 182.6 177 60.5
Solyc01g079660.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 3.7e-44 182.2 182 58.2
Dinv10067 Davidia involucrata HOM05D003790 ORTHO05D004481 1.1e-43 180.6 185 56.2
DCAR_018309 Daucus carota HOM05D003790 ORTHO05D004481 2.4e-43 179.5 179 54.7
PSO210G7449 Papaver somniferum HOM05D003790 ORTHO05D004481 2.4e-43 179.5 189 56.1
PGR119G1194 Punica granatum HOM05D003790 ORTHO05D004481 3.1e-43 179.1 185 53.0
Dinv33098 Davidia involucrata HOM05D003790 ORTHO05D004481 5.3e-43 178.3 207 58.9
PSO761G0583 Papaver somniferum HOM05D003790 ORTHO05D004481 5.3e-43 178.3 188 56.9
Eucgr.H01068 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.9e-43 177.9 180 56.7
PGR119G2441 Punica granatum HOM05D003790 ORTHO05D004481 1.5e-42 176.8 185 52.4
Eucgr.L01709 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.4e-42 175.6 185 56.2
TPR.G7317 Trifolium pratense HOM05D003790 ORTHO05D004481 3.4e-42 175.6 192 52.1
TAR362G0521 Trochodendron aralioides HOM05D003790 ORTHO05D004481 3.4e-42 175.6 185 53.5
Gohir.D11G116500 Gossypium hirsutum HOM05D003790 ORTHO05D004481 5.9e-42 174.9 185 54.1
Sed0026960 Sechium edule HOM05D003790 ORTHO05D004481 5.9e-42 174.9 181 53.0
Lj2P1202T13 Lonicera japonica HOM05D003790 ORTHO05D004481 7.7e-42 174.5 192 51.6
Gorai.007G124700 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.0e-41 174.1 184 54.9
Sed0014571 Sechium edule HOM05D003790 ORTHO05D004481 1.9e-40 169.9 182 49.5
CANSAT25G2552 Cannabis sativa HOM05D003790 ORTHO05D004481 2.5e-40 169.5 198 54.0
ClCG09G005270 Citrullus lanatus HOM05D003790 ORTHO05D004481 3.2e-40 169.1 180 52.2
Solyc01g079670.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 4.2e-40 168.7 175 53.7
Oeu008329.1 Olea europaea HOM05D003790 ORTHO05D004481 1.2e-39 167.2 193 50.8
PGR119G2399 Punica granatum HOM05D003790 ORTHO05D004481 2.1e-39 166.4 170 53.5
Oeu005872.1 Olea europaea HOM05D003790 ORTHO05D004481 4.6e-39 165.2 187 49.7
CsaV3_7G029800 Cucumis sativus L. HOM05D003790 ORTHO05D004481 7.9e-39 164.5 177 50.8
Gohir.A12G126700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 7.9e-39 164.5 186 52.2
Nitab4.5_0000116g0080 Nicotiana tabacum HOM05D003790 ORTHO05D004481 7.9e-39 164.5 169 54.4
Cc08_g11830 Coffea canephora HOM05D003790 ORTHO05D004481 1.4e-38 163.7 207 50.2
Gorai.008G141400 Gossypium raimondii HOM05D003790 ORTHO05D004481 2.3e-38 162.9 183 55.2
Oeu005873.1 Olea europaea HOM05D003790 ORTHO05D004481 2.3e-38 162.9 168 51.2
Gohir.A11G111300 Gossypium hirsutum HOM05D003790 ORTHO05D004481 5.1e-38 161.8 187 51.9
Lj1C20T6 Lonicera japonica HOM05D003790 ORTHO05D004481 1.1e-37 160.6 175 51.4
Lj1C20T16 Lonicera japonica HOM05D003790 ORTHO05D004481 3.3e-37 159.1 173 51.4
MELO3C015941.2 Cucumis melo HOM05D003790 ORTHO05D004481 5.7e-37 158.3 179 49.2
Ah.11g049420 Amaranthus hybridus HOM05D003790 ORTHO05D004481 1.7e-36 156.8 173 52.6
FAN04G0217 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.7e-36 156.8 204 46.6
Atru.chr5.1052 Acer truncatum HOM05D003790 ORTHO05D004481 2.8e-36 156.0 176 54.5
Lsat_1_v5_gn_9_541 Lactuca sativa HOM05D003790 ORTHO05D004481 6.3e-36 154.8 176 51.7
Eucgr.H01059 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.1e-35 154.1 184 51.6
HanXRQChr01g0000871 Helianthus annuus HOM05D003790 ORTHO05D004481 3.1e-35 152.5 177 52.0
RcHm_v2.0_Chr7g0241911 Rosa chinensis HOM05D003790 ORTHO05D004481 4.1e-35 152.1 193 46.1
FAN13G3073 Fragaria x ananassa HOM05D003790 ORTHO05D004481 9.1e-35 151.0 197 45.7
Hma1.2p1_1302F.1_g274340 Hydrangea macrophylla HOM05D003790 ORTHO05D004481 9.1e-35 151.0 186 53.8
TWI36G1341 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 9.1e-35 151.0 182 50.0
FvH4_5g39610 Fragaria vesca HOM05D003790 ORTHO05D004481 1.2e-34 150.6 198 46.5
FAN08G1995 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.2e-34 150.6 198 46.5
FAN18G0157 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.2e-34 150.6 198 46.5
THA.LOC104801296 Tarenaya hassleriana HOM05D003790 ORTHO05D004481 2.0e-34 149.8 180 49.4
Eucgr.H01065 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.4e-34 149.1 183 50.3
Eucgr.K03524 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.5e-34 148.7 197 47.2
HanXRQChr05g0137351 Helianthus annuus HOM05D003790 ORTHO05D004481 3.8e-33 145.6 167 50.9
HanXRQChr05g0137341 Helianthus annuus HOM05D003790 ORTHO05D004481 6.5e-33 144.8 167 52.1
SalBow2G3380 Salvia bowleyana HOM05D003790 ORTHO05D004481 8.5e-33 144.4 178 46.6
C05p01360 Brassica napus HOM05D003790 ORTHO05D004481 1.1e-32 144.1 179 48.6
AL1G12020 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 1.9e-32 143.3 182 47.3
Carub.0001s0174 Capsella rubella HOM05D003790 ORTHO05D004481 2.5e-32 142.9 186 45.7
ECA248G3170 Erigeron canadensis HOM05D003790 ORTHO05D004481 3.2e-32 142.5 170 47.6
CARHR001970 Cardamine hirsuta HOM05D003790 ORTHO05D004481 7.2e-32 141.4 179 48.0
AT5G38700 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 9.4e-32 141.0 189 46.0
BolC5t28918H Brassica oleracea HOM05D003790 ORTHO05D004481 1.2e-31 140.6 179 47.5
SGA_v2.0_scaffold198G41126 Striga asiatica HOM05D003790 ORTHO05D004481 1.6e-31 140.2 184 48.9
A10p01380 Brassica napus HOM05D003790 ORTHO05D004481 2.7e-31 139.4 179 48.0
BraA10t42414Z Brassica rapa HOM05D003790 ORTHO05D004481 2.7e-31 139.4 179 48.0
BcaC07g42307 Brassica carinata HOM05D003790 ORTHO05D004481 4.7e-31 138.7 187 47.1
BcaC07g42401 Brassica carinata HOM05D003790 ORTHO05D004481 4.7e-31 138.7 176 48.3
Sp1g01670 Schrenkiella parvula HOM05D003790 ORTHO05D004481 6.1e-31 138.3 187 43.9
BcaB03g15798 Brassica carinata HOM05D003790 ORTHO05D004481 1.0e-30 137.5 179 44.7
Thhalv10009571m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 1.8e-30 136.7 194 43.3
Eucgr.H01062 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.0e-30 136.0 166 51.2
Eucgr.L01710 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.9e-30 135.6 177 47.5
AL6G50980 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 8.8e-30 134.4 178 43.8
C08p53190 Brassica napus HOM05D003790 ORTHO05D004481 1.5e-29 133.7 187 45.5
BolC8t52834H Brassica oleracea HOM05D003790 ORTHO05D004481 1.5e-29 133.7 187 45.5
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 2.6e-29 132.9 159 50.9
Prupe.8G269600 Prunus persica HOM05D003790 ORTHO05D004481 2.6e-29 132.9 183 42.6
A09p68580 Brassica napus HOM05D003790 ORTHO05D004481 3.3e-29 132.5 189 45.0
BraA09t42201Z Brassica rapa HOM05D003790 ORTHO05D004481 3.3e-29 132.5 189 45.0
Actinidia21418 Actinidia chinensis HOM05D003790 ORTHO05D004481 4.4e-29 132.1 291 32.0
AT4G02170 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 4.4e-29 132.1 178 43.3
EL10As5g23497 Beta vulgaris HOM05D003790 ORTHO05D004481 5.7e-29 131.7 179 48.0
Sp6g02070 Schrenkiella parvula HOM05D003790 ORTHO05D004481 1.7e-28 130.2 176 44.9
TWI75G0985 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 2.2e-28 129.8 174 47.1
HPP92_025189 Vanilla planifolia HOM05D003790 ORTHO05D004481 2.2e-28 129.8 184 42.4
COL.COLO4_23265 Corchorus olitorius HOM05D003790 ORTHO05D004481 1.4e-27 127.1 167 48.5
Eucgr.K03525 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.8e-27 126.7 172 46.5
Eucgr.L01711 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.1e-27 125.9 155 52.3
Duzib264G0610 Durio zibethinus HOM05D003790 ORTHO05D004481 4.1e-27 125.6 169 46.2
Thhalv10029373m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 4.1e-27 125.6 179 44.1
Aa31LG5G1840 Aethionema arabicum HOM05D003790 ORTHO05D004481 7.0e-27 124.8 179 45.8
BolC3t16086H Brassica oleracea HOM05D003790 ORTHO05D004481 7.0e-27 124.8 182 43.4
BcaB01g02435 Brassica carinata HOM05D003790 ORTHO05D004481 2.0e-26 123.2 176 45.5
A03p31160 Brassica napus HOM05D003790 ORTHO05D004481 2.0e-26 123.2 182 43.4
BraA03t12296Z Brassica rapa HOM05D003790 ORTHO05D004481 2.0e-26 123.2 185 42.7
BcaC01g06770 Brassica carinata HOM05D003790 ORTHO05D004481 5.9e-26 121.7 182 42.9
BcaC01g06771 Brassica carinata HOM05D003790 ORTHO05D004481 5.9e-26 121.7 182 42.9
C03p38000 Brassica napus HOM05D003790 ORTHO05D004481 5.9e-26 121.7 182 42.9
Sc17g0000570 Simmondsia chinensis HOM05D003790 ORTHO05D004481 1.0e-25 120.9 175 47.4
AUR62011841 Chenopodium quinoa HOM05D003790 ORTHO05D004481 1.7e-25 120.2 187 41.7
Migut.D00101 Erythranthe guttata HOM05D003790 ORTHO05D004481 3.8e-25 119.0 175 43.4
Thecc.01G102100 Theobroma cacao HOM05D003790 ORTHO05D004481 5.0e-25 118.6 170 47.1
Carub.0006s3500 Capsella rubella HOM05D003790 ORTHO05D004481 6.5e-25 118.2 185 42.2
AUR62024684 Chenopodium quinoa HOM05D003790 ORTHO05D004481 2.5e-24 116.3 177 42.9
MD11G1317200 Malus domestica HOM05D003790 ORTHO05D004481 5.5e-24 115.2 240 39.2
Gohir.D12G130100 Gossypium hirsutum HOM05D003790 ORTHO05D004481 9.4e-24 114.4 148 48.6
Eucgr.L02503 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.6e-23 112.5 179 42.5
Duzib147G1191 Durio zibethinus HOM05D003790 ORTHO05D004481 5.2e-22 108.6 171 43.3
HPP92_006897 Vanilla planifolia HOM05D003790 ORTHO05D004481 1.2e-21 107.5 144 43.8
Eucgr.E02488 Eucalyptus grandis HOM05D003790 ORTHO05D004481 9.7e-21 104.4 98 53.1
Eucgr.F04057 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.7e-20 102.4 99 53.5
Os03g0302800 Oryza sativa ssp. japonica HOM05D003790 ORTHO05D004481 5.3e-19 98.6 202 37.6
Eucgr.L00541 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.5e-18 95.9 99 51.5
Eucgr.F04083 Eucalyptus grandis HOM05D003790 ORTHO05D004481 7.7e-18 94.7 99 50.5
Eucgr.A02768 Eucalyptus grandis HOM05D003790 ORTHO05D004481 8.5e-17 91.3 100 49.0
Zm00001eb014210 Zea mays HOM05D003790 ORTHO05D004481 1.5e-16 90.5 209 34.4
MD03G1297400 Malus domestica HOM05D003790 ORTHO05D004481 1.9e-16 90.1 239 33.9
CARHR250350 Cardamine hirsuta HOM05D003790 ORTHO05D004481 1.4e-14 84.0 141 38.3
SEGI_22681 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 3.0e-14 82.8 193 31.6
COL.COLO4_09960 Corchorus olitorius HOM05D003790 ORTHO05D004481 5.2e-14 82.0 172 37.8
SGA_v2.0_scaffold334G49053 Striga asiatica HOM05D003790 ORTHO05D004481 6.8e-14 81.6 104 44.2
ATR0706G232 Amborella trichopoda HOM05D003790 ORTHO05D004481 1.2e-13 80.9 181 34.3
Nn6g33912 Nelumbo nucifera HOM05D003790 ORTHO05D004481 4.4e-13 79.0 95 46.3
Zm00001eb396420 Zea mays HOM05D003790 ORTHO05D004481 5.7e-13 78.6 207 38.2
Thhalv10029363m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 1.1e-11 74.3 150 39.3
Eucgr.H01752 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.4e-11 73.9 86 52.3
HPP92_011875 Vanilla planifolia HOM05D003790 ORTHO05D004481 3.1e-11 72.8 177 33.3
SEGI_15713 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 2.3e-09 66.6 192 30.7
MELO3C017926.2 Cucumis melo HOM05D003790 ORTHO05D044967 3.8e-09 65.9 173 30.1
CsaV3_4G001110 Cucumis sativus L. HOM05D003790 ORTHO05D044967 5.0e-09 65.5 179 29.1
Nn2g14986 Nelumbo nucifera HOM05D003790 ORTHO05D004481 8.6e-09 64.7 47 55.3
CAN.G69.6 Capsicum annuum HOM05D003790 ORTHO05D004481 4.7e-07 58.9 98 44.9
Sc17g0000580 Simmondsia chinensis HOM05D003790 ORTHO05D004481 8.0e-07 58.2 143 33.6
Os01g0861400 Oryza sativa ssp. japonica HOM05D003790 ORTHO05D004481 1.8e-06 57.0 94 37.2
ATR0580G176 Amborella trichopoda HOM05D003790 ORTHO05D004481 3.0e-06 56.2 98 37.8


User provided reference genes

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