Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G109200 Carya illinoinensis HOM05D007613 ORTHO05D009344 1.3e-67 259.6 131 100.0
QL12p028448 Quercus lobata HOM05D007613 ORTHO05D009344 3.9e-56 221.5 130 83.1
Potri.014G128900 Populus trichocarpa HOM05D007613 ORTHO05D009344 2.1e-54 215.7 129 79.8
Eucgr.H01109 Eucalyptus grandis HOM05D007613 ORTHO05D009344 4.7e-54 214.5 131 80.2
CsaV3_7G029280 Cucumis sativus L. HOM05D007613 ORTHO05D009344 1.5e-52 209.5 129 75.2
MELO3C016000.2 Cucumis melo HOM05D007613 ORTHO05D009344 4.4e-52 208.0 129 74.4
Manes.01G219200 Manihot esculenta HOM05D007613 ORTHO05D009344 4.4e-52 208.0 129 76.7
Ciclev10022836m.g Citrus clementina HOM05D007613 ORTHO05D009344 9.9e-52 206.8 131 74.8
Duzib133G0913 Durio zibethinus HOM05D007613 ORTHO05D009344 6.4e-51 204.1 131 74.0
arahy.Tifrunner.gnm1.ann1.BW40YJ Arachis hypogaea HOM05D007613 ORTHO05D009344 8.4e-51 203.8 131 70.2
VMungo0720G1265 Vigna mungo HOM05D007613 ORTHO05D009344 1.4e-50 203.0 131 71.8
arahy.Tifrunner.gnm1.ann1.7MAL8N Arachis hypogaea HOM05D007613 ORTHO05D009344 1.9e-50 202.6 131 70.2
Phvul.007G146700 Phaseolus vulgaris HOM05D007613 ORTHO05D009344 1.2e-49 199.9 131 70.2
TPR.G33996 Trifolium pratense HOM05D007613 ORTHO05D009344 2.7e-49 198.7 129 74.4
GSVIVG01028017001 Vitis vinifera HOM05D007613 ORTHO05D009344 2.7e-49 198.7 126 76.2
Cpa.g.sc9.260 Carica papaya HOM05D000286 ORTHO05D000170 7.8e-49 197.2 116 80.2
Psat6g165400 Pisum sativum HOM05D007613 ORTHO05D009344 1.7e-48 196.1 129 72.1
Lj5g0017580 Lotus japonicus HOM05D007613 ORTHO05D009344 2.3e-48 195.7 133 72.2
Actinidia24821 Actinidia chinensis HOM05D007613 ORTHO05D009344 6.6e-48 194.1 131 71.8
TAR636G2501 Trochodendron aralioides HOM05D007613 ORTHO05D009344 3.3e-47 191.8 129 69.8
AT3G62880 Arabidopsis thaliana HOM05D007613 ORTHO05D009344 5.6e-47 191.0 129 69.8
PGR119G2478 Punica granatum HOM05D007613 ORTHO05D009344 5.6e-47 191.0 131 73.3
Thecc.01G300700 Theobroma cacao HOM05D007613 ORTHO05D009344 7.3e-47 190.7 109 78.9
AL5G45650 Arabidopsis lyrata HOM05D007613 ORTHO05D009344 2.1e-46 189.1 129 68.2
MD03G1288400 Malus domestica HOM05D007613 ORTHO05D009344 6.2e-46 187.6 128 71.1
Prupe.8G261600 Prunus persica HOM05D007613 ORTHO05D009344 1.1e-45 186.8 131 70.2
vmacro15014 Vaccinium macrocarpon HOM05D007613 ORTHO05D009344 5.2e-45 184.5 136 66.2
Ca_10334_v3 Cicer arietinum L. HOM05D007613 ORTHO05D009344 6.8e-45 184.1 129 71.3
Thhalv10006304m.g Eutrema salsugineum HOM05D007613 ORTHO05D009344 8.9e-45 183.7 129 67.4
Medtr1g088460 Medicago truncatula HOM05D007613 ORTHO05D009344 1.2e-44 183.3 129 68.2
THA.LOC104798831 Tarenaya hassleriana HOM05D007613 ORTHO05D009344 1.5e-44 183.0 131 67.9
Glyma.10G018300 Glycine max HOM05D007613 ORTHO05D009344 2.6e-44 182.2 133 65.4
Sp5g00640 Schrenkiella parvula HOM05D007613 ORTHO05D009344 3.4e-44 181.8 129 65.9
Gohir.D12G134100 Gossypium hirsutum HOM05D007613 ORTHO05D009344 5.8e-44 181.0 126 69.0
Gorai.008G145100 Gossypium raimondii HOM05D007613 ORTHO05D009344 9.9e-44 180.3 126 68.3
Atru.chr5.1146 Acer truncatum HOM05D007613 ORTHO05D009344 2.9e-43 178.7 131 66.4
Aa31LG10G16510 Aethionema arabicum HOM05D007613 ORTHO05D009344 4.9e-43 177.9 130 64.6
CARHR173140 Cardamine hirsuta HOM05D007613 ORTHO05D009344 2.4e-42 175.6 129 63.6
Lalb_Chr06g0166471 Lupinus albus HOM05D007613 ORTHO05D009344 3.2e-42 175.3 131 61.8
BraA04t15767Z Brassica rapa HOM05D007613 ORTHO05D009344 1.2e-41 173.3 129 62.0
HanXRQChr13g0413041 Helianthus annuus HOM05D007613 ORTHO05D009344 2.7e-41 172.2 125 64.8
BcaB02g08092 Brassica carinata HOM05D007613 ORTHO05D009344 6.0e-41 171.0 129 61.2
C04p30380 Brassica napus HOM05D007613 ORTHO05D009344 1.7e-40 169.5 129 62.8
BolC4t24569H Brassica oleracea HOM05D007613 ORTHO05D009344 1.7e-40 169.5 129 62.8
RcHm_v2.0_Chr6g0294031 Rosa chinensis HOM05D007613 ORTHO05D009344 2.3e-40 169.1 128 64.1
ECA248G1192 Erigeron canadensis HOM05D007613 ORTHO05D009344 6.6e-40 167.5 125 63.2
Lsat_1_v5_gn_5_191040 Lactuca sativa HOM05D007613 ORTHO05D009344 8.7e-40 167.2 125 64.0
EL10Ac7g17473 Beta vulgaris HOM05D007613 ORTHO05D009344 9.6e-39 163.7 129 63.6
Lalb_Chr02g0146351 Lupinus albus HOM05D007613 ORTHO05D009344 2.1e-38 162.5 131 58.0
TWI59G0030 Tripterygium wilfordii HOM05D007613 ORTHO05D009344 3.6e-38 161.8 131 56.5
Nitab4.5_0002820g0060 Nicotiana tabacum HOM05D007613 ORTHO05D009344 8.1e-38 160.6 128 61.7
Peaxi162Scf00140g01222 Petunia axillaris HOM05D007613 ORTHO05D009344 8.1e-38 160.6 128 61.7
Solyc06g084550.3 Solanum lycopersicum HOM05D007613 ORTHO05D009344 8.1e-38 160.6 128 60.2
Sopen06g035930 Solanum pennellii HOM05D007613 ORTHO05D009344 1.1e-37 160.2 128 60.2
MSTRG.18147 Avicennia marina HOM05D007613 ORTHO05D009344 1.4e-37 159.8 116 62.1
Nitab4.5_0019054g0010 Nicotiana tabacum HOM05D007613 ORTHO05D009344 2.4e-37 159.1 128 60.2
PSO170G2016 Papaver somniferum HOM05D007613 ORTHO05D009344 2.4e-37 159.1 130 58.5
Haze_04939 Corylus avellana HOM05D007613 ORTHO05D009344 6.9e-37 157.5 103 74.8
Cc01_g20860 Coffea canephora HOM05D007613 ORTHO05D009344 2.6e-36 155.6 127 59.8
Ah.08g213430 Amaranthus hybridus HOM05D000286 ORTHO05D000170 3.4e-36 155.2 126 60.3
ClCG09G005860 Citrullus lanatus HOM05D007613 ORTHO05D009344 5.8e-36 154.5 134 61.2
Oeu048336.2 Olea europaea HOM05D007613 ORTHO05D009344 5.8e-36 154.5 129 56.6
Hma1.2p1_0491F.1_g164570 Hydrangea macrophylla HOM05D007613 ORTHO05D009344 7.6e-36 154.1 132 59.8
Sed0015913 Sechium edule HOM05D007613 ORTHO05D009344 2.9e-35 152.1 97 71.1
CAN.G1209.25 Capsicum annuum HOM05D007613 ORTHO05D009344 8.4e-35 150.6 128 57.0
CDE08G0198 Ceratophyllum demersum HOM05D007613 ORTHO05D009344 8.4e-35 150.6 117 59.0
DCAR_018332 Daucus carota HOM05D007613 ORTHO05D009344 7.1e-34 147.5 123 58.5
COL.COLO4_23344 Corchorus olitorius HOM05D007613 ORTHO05D009344 1.2e-33 146.7 90 70.0
A04p00480 Brassica napus HOM05D007613 ORTHO05D009344 1.3e-32 143.3 105 61.9
CSS0026666 Camellia sinensis var. sinensis HOM05D007613 ORTHO05D009344 1.3e-32 143.3 87 74.7
Migut.D00222 Erythranthe guttata HOM05D007613 ORTHO05D009344 3.9e-32 141.7 121 55.4
FvH4_2g25740 Fragaria vesca HOM05D007613 ORTHO05D009344 1.9e-31 139.4 127 52.8
Nn3g21498 Nelumbo nucifera HOM05D007613 ORTHO05D009344 7.4e-31 137.5 86 70.9
Sabra14G0095700 Salix brachista HOM05D007613 ORTHO05D009344 3.6e-30 135.2 129 58.9
FAN20G1450 Fragaria x ananassa HOM05D007613 ORTHO05D009344 7.6e-28 127.5 147 46.9
Rhsim01G0285300 Rhododendron simsii HOM05D007613 ORTHO05D009344 2.2e-27 125.9 99 58.6
Aqoxy2G02939 Aquilegia oxysepala HOM05D007613 ORTHO05D009344 5.5e-26 121.3 120 48.3
HanXRQChr13g0413071 Helianthus annuus HOM05D007613 ORTHO05D009344 5.5e-26 121.3 74 74.3
Migut.B01150 Erythranthe guttata HOM05D007613 ORTHO05D009344 7.9e-25 117.5 108 50.9
ATR0706G141 Amborella trichopoda HOM05D007613 ORTHO05D009344 2.8e-22 109.0 119 42.9
FAN27G2766 Fragaria x ananassa HOM05D007613 ORTHO05D009344 6.2e-22 107.8 87 57.5
BcaC02g10319 Brassica carinata HOM05D007613 ORTHO05D009344 5.3e-21 104.8 77 64.9
PGSC0003DMG400024046 Solanum tuberosum HOM05D007613 ORTHO05D009344 1.2e-20 103.6 151 41.1
Pp3c19_22480 Physcomitrium patens HOM05D007613 ORTHO05D009344 4.5e-20 101.7 119 41.2
SMO347G0100 Selaginella moellendorffii HOM05D007613 ORTHO05D009344 5.8e-20 101.3 94 48.9
Actinidia21047 Actinidia chinensis HOM05D007613 ORTHO05D009344 7.6e-20 100.9 55 83.6
Cfa005911 Carpinus fangiana HOM05D007613 ORTHO05D009344 7.6e-20 100.9 145 49.0
MD11G1309700 Malus domestica HOM05D007613 ORTHO05D009344 3.2e-18 95.5 65 69.2
AUR62008666 Chenopodium quinoa HOM05D007613 ORTHO05D009344 9.3e-18 94.0 77 58.4
SGA_v2.0_scaffold1G00364 Striga asiatica HOM05D001636 ORTHO05D003817 7.9e-17 90.9 70 60.0
Gohir.A12G130300 Gossypium hirsutum HOM05D007613 ORTHO05D009344 1.8e-16 89.7 136 42.6
SalBow3G3757 Salvia bowleyana HOM05D007613 ORTHO05D009344 2.5e-15 85.9 63 58.7
Mapoly0048s0107 Marchantia polymorpha HOM05D007613 ORTHO05D009344 1.3e-14 83.6 96 42.7
SHI15147 Sapria himalayana HOM05D007613 ORTHO05D009344 3.7e-14 82.0 63 57.1
Hund18170 Selenicereus undatus HOM05D007613 ORTHO05D009344 1.5e-12 76.6 68 52.9
Carub.0005s2952 Capsella rubella HOM05D001675 ORTHO05D001808 1.7e-11 73.2 47 70.2
A07p19380 Brassica napus HOM05D002174 ORTHO05D005941 8.4e-11 70.9 118 37.3
BraA07t29643Z Brassica rapa HOM05D002174 ORTHO05D005941 8.4e-11 70.9 118 37.3
FAN24G3183 Fragaria x ananassa HOM05D007613 ORTHO05D009344 1.4e-10 70.1 64 48.4
BcaC02g11023 Brassica carinata HOM05D002174 ORTHO05D005941 5.5e-10 68.2 118 36.4
C04p22080 Brassica napus HOM05D002174 ORTHO05D005941 5.5e-10 68.2 118 36.4
BolC4t23731H Brassica oleracea HOM05D002174 ORTHO05D005941 5.5e-10 68.2 118 36.4
FAN15G1907 Fragaria x ananassa HOM05D007613 ORTHO05D009344 7.2e-10 67.8 96 38.5
BcaB02g10211 Brassica carinata HOM05D002174 ORTHO05D005941 9.3e-10 67.4 118 36.4
CARHR122070 Cardamine hirsuta HOM05D002174 ORTHO05D005941 9.3e-10 67.4 118 35.6
Thhalv10017379m.g Eutrema salsugineum HOM05D002174 ORTHO05D005941 9.3e-10 67.4 117 33.3
FAN16G0236 Fragaria x ananassa HOM05D002174 ORTHO05D005941 2.1e-09 66.2 118 33.9
SEGI_11453 Sequoiadendron giganteum HOM05D002174 ORTHO05D005941 2.7e-09 65.9 121 33.1
AagrBONN_evm.TU.Sc2ySwM_228.3892 Anthoceros agrestis HOM05D002174 ORTHO05D005941 7.9e-09 64.3 92 35.9
Cfa009013 Carpinus fangiana HOM05D002174 ORTHO05D005941 7.9e-09 64.3 118 34.7
FvH4_3g36080 Fragaria vesca HOM05D002174 ORTHO05D005941 7.9e-09 64.3 95 35.8
Sp4g11710 Schrenkiella parvula HOM05D002174 ORTHO05D005941 7.9e-09 64.3 95 36.8
AUR62033103 Chenopodium quinoa HOM05D007613 ORTHO05D009344 1.0e-08 63.9 129 32.6
Carub.0004s0989 Capsella rubella HOM05D002174 ORTHO05D005941 3.0e-08 62.4 115 31.3
THA.LOC104800661 Tarenaya hassleriana HOM05D002174 ORTHO05D005941 3.0e-08 62.4 118 33.9
vmacro14518 Vaccinium macrocarpon HOM05D002174 ORTHO05D005941 3.0e-08 62.4 97 34.0
Medtr2g096920 Medicago truncatula HOM05D002174 ORTHO05D005941 3.9e-08 62.0 115 32.2
SEGI_00670 Sequoiadendron giganteum HOM05D002174 ORTHO05D005941 3.9e-08 62.0 92 35.9
FAN25G1103 Fragaria x ananassa HOM05D002174 ORTHO05D005941 5.1e-08 61.6 118 31.4
Medtr2g096900 Medicago truncatula HOM05D002174 ORTHO05D005941 5.1e-08 61.6 115 32.2
Os05g0111200 Oryza sativa ssp. japonica HOM05D002174 ORTHO05D005941 6.7e-08 61.2 97 30.9
AT2G28900 Arabidopsis thaliana HOM05D002174 ORTHO05D005941 8.7e-08 60.8 115 30.4
RcHm_v2.0_Chr5g0064511 Rosa chinensis HOM05D002174 ORTHO05D005941 8.7e-08 60.8 118 31.4
TPR.G34323 Trifolium pratense HOM05D002174 ORTHO05D005941 8.7e-08 60.8 115 32.2
AL4G23430 Arabidopsis lyrata HOM05D002174 ORTHO05D005941 1.1e-07 60.5 115 30.4
AUR62030424 Chenopodium quinoa HOM05D002174 ORTHO05D005941 1.1e-07 60.5 118 33.1
FAN21G2955 Fragaria x ananassa HOM05D002174 ORTHO05D005941 1.1e-07 60.5 118 31.4
CiPaw.13G094300 Carya illinoinensis HOM05D002174 ORTHO05D005941 1.5e-07 60.1 118 33.1
Glyma.15G038200 Glycine max HOM05D002174 ORTHO05D005941 1.9e-07 59.7 115 30.4
Atru.chr3.3905 Acer truncatum HOM05D002174 ORTHO05D005941 2.5e-07 59.3 118 29.7
Ah.12g058520 Amaranthus hybridus HOM05D002174 ORTHO05D005941 2.5e-07 59.3 93 32.3
Glyma.13G336100 Glycine max HOM05D002174 ORTHO05D005941 2.5e-07 59.3 115 30.4
Phvul.L005543 Phaseolus vulgaris HOM05D002174 ORTHO05D005941 2.5e-07 59.3 115 33.0
Prupe.6G077600 Prunus persica HOM05D002174 ORTHO05D005941 2.5e-07 59.3 115 32.2
CDE01G0513 Ceratophyllum demersum HOM05D002174 ORTHO05D005447 3.3e-07 58.9 118 32.2
Ca_01326_v3 Cicer arietinum L. HOM05D002174 ORTHO05D005941 3.3e-07 58.9 115 31.3
Lj3g0015229 Lotus japonicus HOM05D002174 ORTHO05D005941 3.3e-07 58.9 115 31.3
MD03G1093500 Malus domestica HOM05D002174 ORTHO05D005941 3.3e-07 58.9 118 31.4
Sc07g0007940 Simmondsia chinensis HOM05D002174 ORTHO05D005941 3.3e-07 58.9 95 35.8
VMungo1080G1891 Vigna mungo HOM05D002174 ORTHO05D005941 3.3e-07 58.9 115 33.0
AagrBONN_evm.TU.Sc2ySwM_362.1645 Anthoceros agrestis HOM05D002174 ORTHO05D005941 7.4e-07 57.8 74 39.2
EL10Ac5g12576 Beta vulgaris HOM05D002174 ORTHO05D005941 7.4e-07 57.8 115 29.6
Sabra16G0144700 Salix brachista HOM05D002174 ORTHO05D005941 7.4e-07 57.8 95 32.6
unitig_0.g668 Utricularia gibba HOM05D007613 ORTHO05D009344 7.4e-07 57.8 36 69.4
CDE09G0525 Ceratophyllum demersum HOM05D002174 ORTHO05D005941 9.7e-07 57.4 118 33.1
Pp3c10_18330 Physcomitrium patens HOM05D002174 ORTHO05D005447 9.7e-07 57.4 92 34.8
CSS0007494 Camellia sinensis var. sinensis HOM05D002174 ORTHO05D005941 1.3e-06 57.0 118 30.5
Dinv42951 Davidia involucrata HOM05D002174 ORTHO05D005941 1.3e-06 57.0 97 30.9
Dinv43149 Davidia involucrata HOM05D002174 ORTHO05D005941 1.3e-06 57.0 97 30.9
Hma1.2p1_0035F.1_g022420 Hydrangea macrophylla HOM05D002174 ORTHO05D005941 1.3e-06 57.0 118 30.5
PGR119G2250 Punica granatum HOM05D002174 ORTHO05D005941 1.3e-06 57.0 118 30.5
QL01p032005 Quercus lobata HOM05D002174 ORTHO05D005941 1.3e-06 57.0 118 32.2
SMO358G0166 Selaginella moellendorffii HOM05D002174 ORTHO05D005941 1.6e-06 56.6 121 28.1
HPP92_001148 Vanilla planifolia HOM05D002174 ORTHO05D005447 1.6e-06 56.6 97 40.2
ATR0559G109 Amborella trichopoda HOM05D002174 ORTHO05D005941 2.2e-06 56.2 97 32.0
CDE04G1891 Ceratophyllum demersum HOM05D002174 ORTHO05D005941 2.2e-06 56.2 119 33.6
Hund14299 Selenicereus undatus HOM05D002174 ORTHO05D005941 2.2e-06 56.2 118 31.4
MSTRG.17832 Avicennia marina HOM05D002174 ORTHO05D005941 2.8e-06 55.8 118 31.4
Cpa.g.sc81.151 Carica papaya HOM05D002174 ORTHO05D005941 2.8e-06 55.8 93 33.3
Lalb_Chr13g0298411 Lupinus albus HOM05D002174 ORTHO05D005447 2.8e-06 55.8 92 41.3
Pp3c12_16880 Physcomitrium patens HOM05D002174 ORTHO05D005941 2.8e-06 55.8 122 31.1
HPP92_001059 Vanilla planifolia HOM05D002174 ORTHO05D005447 2.8e-06 55.8 76 44.7
AagrBONN_evm.TU.Sc2ySwM_117.346 Anthoceros agrestis HOM05D001717 ORTHO05D007217 3.7e-06 55.5 121 31.4
RcHm_v2.0_Chr4g0412121 Rosa chinensis HOM05D002174 ORTHO05D005941 3.7e-06 55.5 108 30.6
CSS0035653 Camellia sinensis var. sinensis HOM05D002174 ORTHO05D005941 4.8e-06 55.1 118 31.4
Eucgr.J02053 Eucalyptus grandis HOM05D002174 ORTHO05D005941 4.8e-06 55.1 118 29.7
Lalb_Chr07g0182101 Lupinus albus HOM05D002174 ORTHO05D005447 4.8e-06 55.1 87 40.2
Cc01_g12870 Coffea canephora HOM05D002174 ORTHO05D005941 6.3e-06 54.7 118 30.5
CsaV3_6G022380 Cucumis sativus L. HOM05D002174 ORTHO05D005447 6.3e-06 54.7 87 41.4
Os01g0303300 Oryza sativa ssp. japonica HOM05D002174 ORTHO05D005447 6.3e-06 54.7 86 43.0
Pp3c3_28050 Physcomitrium patens HOM05D002174 ORTHO05D005941 6.3e-06 54.7 123 32.5
PGSC0003DMG400009672 Solanum tuberosum HOM05D002174 ORTHO05D005941 6.3e-06 54.7 97 30.9
arahy.Tifrunner.gnm1.ann1.X88BGH Arachis hypogaea HOM05D002174 ORTHO05D005941 8.2e-06 54.3 128 30.5
CANSAT54G0240 Cannabis sativa HOM05D002174 ORTHO05D005941 8.2e-06 54.3 95 31.6
Ca_21451_v3 Cicer arietinum L. HOM05D002174 ORTHO05D005447 8.2e-06 54.3 87 39.1
Ciclev10006030m.g Citrus clementina HOM05D002174 ORTHO05D005447 8.2e-06 54.3 87 41.4
Hma1.2p1_0418F.1_g149160 Hydrangea macrophylla HOM05D002174 ORTHO05D005941 8.2e-06 54.3 118 28.8
Mapoly0133s0032 Marchantia polymorpha HOM05D002174 ORTHO05D005941 8.2e-06 54.3 121 30.6
Peaxi162Scf00065g00015 Petunia axillaris HOM05D002174 ORTHO05D005447 8.2e-06 54.3 87 41.4
SMO147G0258 Selaginella moellendorffii HOM05D002174 ORTHO05D005941 8.2e-06 54.3 122 33.6
Thecc.09G322000 Theobroma cacao HOM05D002174 ORTHO05D005941 8.2e-06 54.3 93 32.3


User provided reference genes

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