Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G108200 Carya illinoinensis HOM05D005224 ORTHO05D006372 4.4e-45 184.1 85 100.0
Haze_04931 Corylus avellana HOM05D005224 ORTHO05D006372 2.4e-38 161.8 85 87.1
Cfa005919 Carpinus fangiana HOM05D005224 ORTHO05D006372 3.1e-38 161.4 85 87.1
Manes.01G218400 Manihot esculenta HOM05D005224 ORTHO05D006372 6.9e-38 160.2 83 85.5
QL12p028550 Quercus lobata HOM05D005224 ORTHO05D006372 4.5e-37 157.5 84 83.3
Manes.05G062300 Manihot esculenta HOM05D005224 ORTHO05D006372 1.7e-36 155.6 83 83.1
TWI23G0618 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 2.2e-36 155.2 83 83.1
TWI14G1007 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 3.8e-36 154.5 83 83.1
Duzib133G0273 Durio zibethinus HOM05D005224 ORTHO05D006372 6.4e-36 153.7 83 85.5
Gohir.A08G042400 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.1e-35 152.9 84 85.7
Gohir.A08G075800 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.1e-35 152.9 84 84.5
Gohir.A12G130700 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.1e-35 152.9 84 84.5
Gohir.D08G052200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.1e-35 152.9 84 85.7
Gohir.D12G134600 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.1e-35 152.9 84 84.5
Gorai.004G052300 Gossypium raimondii HOM05D005224 ORTHO05D006372 1.1e-35 152.9 84 85.7
Gorai.004G089700 Gossypium raimondii HOM05D005224 ORTHO05D006372 1.1e-35 152.9 84 84.5
Gorai.008G145500 Gossypium raimondii HOM05D005224 ORTHO05D006372 1.1e-35 152.9 84 84.5
MD03G1287600 Malus domestica HOM05D005224 ORTHO05D006372 1.1e-35 152.9 84 86.9
Thecc.01G299700 Theobroma cacao HOM05D005224 ORTHO05D006372 1.1e-35 152.9 82 84.1
Duzib211G0376 Durio zibethinus HOM05D005224 ORTHO05D006372 1.4e-35 152.5 84 84.5
CANSAT25G2283 Cannabis sativa HOM05D005224 ORTHO05D006372 2.4e-35 151.8 83 84.3
Prupe.8G260800 Prunus persica HOM05D005224 ORTHO05D006372 2.4e-35 151.8 84 85.7
Gohir.D08G085200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 3.2e-35 151.4 84 83.3
Ciclev10033216m.g Citrus clementina HOM05D005224 ORTHO05D006372 4.2e-35 151.0 83 83.1
Glyma.03G214500 Glycine max HOM05D005224 ORTHO05D006372 7.1e-35 150.2 85 82.4
THA.LOC104817499 Tarenaya hassleriana HOM05D005224 ORTHO05D006372 7.1e-35 150.2 83 80.7
ClCG10G010880 Citrullus lanatus HOM05D005224 ORTHO05D006372 1.2e-34 149.4 76 88.2
Sp4g29630 Schrenkiella parvula HOM05D005224 ORTHO05D006372 2.1e-34 148.7 83 79.5
AL4G47260 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 2.7e-34 148.3 83 79.5
Glyma.19G211200 Glycine max HOM05D005224 ORTHO05D006372 2.7e-34 148.3 85 81.2
Phvul.001G207200 Phaseolus vulgaris HOM05D005224 ORTHO05D006372 2.7e-34 148.3 85 81.2
Potri.014G129600 Populus trichocarpa HOM05D005224 ORTHO05D006372 2.7e-34 148.3 83 81.9
Sed0019318 Sechium edule HOM05D005224 ORTHO05D006372 2.7e-34 148.3 82 81.7
Sed0018249 Sechium edule HOM05D005224 ORTHO05D006372 3.5e-34 147.9 76 86.8
Thhalv10001702m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 4.6e-34 147.5 83 78.3
Hund11874 Selenicereus undatus HOM05D005224 ORTHO05D006372 4.6e-34 147.5 83 80.7
HPP92_017223 Vanilla planifolia HOM05D005224 ORTHO05D006372 4.6e-34 147.5 86 80.2
Lalb_Chr15g0078521 Lupinus albus HOM05D005224 ORTHO05D006372 6.0e-34 147.1 85 81.2
TAR365G0183 Trochodendron aralioides HOM05D005224 ORTHO05D006372 6.0e-34 147.1 84 81.0
Ah.02g128370 Amaranthus hybridus HOM05D005224 ORTHO05D006372 7.9e-34 146.7 83 79.5
Cpa.g.sc19.280 Carica papaya HOM05D005224 ORTHO05D006372 7.9e-34 146.7 83 80.7
AT2G47690 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 1.0e-33 146.4 83 78.3
Dinv29760 Davidia involucrata HOM05D005224 ORTHO05D006372 1.0e-33 146.4 78 85.9
Dinv44366 Davidia involucrata HOM05D005224 ORTHO05D006372 1.0e-33 146.4 78 85.9
PSO210G7006 Papaver somniferum HOM05D005224 ORTHO05D006372 1.0e-33 146.4 85 76.5
RcHm_v2.0_Chr6g0293941 Rosa chinensis HOM05D005224 ORTHO05D006372 1.0e-33 146.4 84 84.5
Aqoxy2G02950 Aquilegia oxysepala HOM05D005224 ORTHO05D006372 1.3e-33 146.0 85 76.5
CARHR143080 Cardamine hirsuta HOM05D005224 ORTHO05D006372 1.3e-33 146.0 83 78.3
MELO3C017960.2 Cucumis melo HOM05D005224 ORTHO05D006372 1.3e-33 146.0 76 85.5
Lj1g0012977 Lotus japonicus HOM05D005224 ORTHO05D006372 1.3e-33 146.0 85 81.2
CsaV3_4G000760 Cucumis sativus L. HOM05D005224 ORTHO05D006372 1.8e-33 145.6 76 84.2
Thhalv10006347m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 1.8e-33 145.6 83 78.3
FvH4_2g25680 Fragaria vesca HOM05D005224 ORTHO05D006372 1.8e-33 145.6 84 83.3
FAN15G2088 Fragaria x ananassa HOM05D005224 ORTHO05D006372 1.8e-33 145.6 84 83.3
FAN20G0551 Fragaria x ananassa HOM05D005224 ORTHO05D006372 1.8e-33 145.6 84 83.3
FAN27G2170 Fragaria x ananassa HOM05D005224 ORTHO05D006372 1.8e-33 145.6 84 83.3
AT3G62790 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 2.3e-33 145.2 83 78.3
CSS0034435 Camellia sinensis var. sinensis HOM05D005224 ORTHO05D006372 2.3e-33 145.2 75 85.3
Carub.0005s2944 Capsella rubella HOM05D005224 ORTHO05D006372 2.3e-33 145.2 83 78.3
Eucgr.K03475 Eucalyptus grandis HOM05D005224 ORTHO05D006372 2.3e-33 145.2 83 83.1
Nn4g25791 Nelumbo nucifera HOM05D005224 ORTHO05D006372 2.3e-33 145.2 84 78.6
PSO170G2085 Papaver somniferum HOM05D005224 ORTHO05D006372 2.3e-33 145.2 85 75.3
vmacro03691 Vaccinium macrocarpon HOM05D005224 ORTHO05D006372 2.3e-33 145.2 83 79.5
Cc04_g11150 Coffea canephora HOM05D005224 ORTHO05D006372 3.0e-33 144.8 82 79.3
HanXRQChr17g0538761 Helianthus annuus HOM05D005224 ORTHO05D006372 3.0e-33 144.8 83 79.5
PGR042G0105 Punica granatum HOM05D005224 ORTHO05D006372 3.0e-33 144.8 85 81.2
Actinidia24346 Actinidia chinensis HOM05D001413 ORTHO05D001385 3.9e-33 144.4 74 86.5
EL10Ac3g05917 Beta vulgaris HOM05D005224 ORTHO05D006372 3.9e-33 144.4 83 78.3
BcaC02g12549 Brassica carinata HOM05D005224 ORTHO05D006372 3.9e-33 144.4 83 78.3
C04p00180 Brassica napus HOM05D005224 ORTHO05D006372 3.9e-33 144.4 83 78.3
BolC4t21665H Brassica oleracea HOM05D005224 ORTHO05D006372 3.9e-33 144.4 83 78.3
HanXRQChr06g0173941 Helianthus annuus HOM05D005224 ORTHO05D006372 3.9e-33 144.4 86 79.1
GSVIVG01035146001 Vitis vinifera HOM05D005224 ORTHO05D006372 3.9e-33 144.4 78 84.6
Lalb_Chr04g0259841 Lupinus albus HOM05D005224 ORTHO05D006372 5.1e-33 144.1 85 80.0
Carub.0004s3041 Capsella rubella HOM05D005224 ORTHO05D006372 6.7e-33 143.7 83 77.1
Lsat_1_v5_gn_3_24761 Lactuca sativa HOM05D005224 ORTHO05D006372 6.7e-33 143.7 86 79.1
arahy.Tifrunner.gnm1.ann1.8KN71Z Arachis hypogaea HOM05D005224 ORTHO05D006372 8.7e-33 143.3 85 80.0
arahy.Tifrunner.gnm1.ann1.EEQ3S4 Arachis hypogaea HOM05D005224 ORTHO05D006372 8.7e-33 143.3 85 80.0
arahy.Tifrunner.gnm1.ann1.U5VDRT Arachis hypogaea HOM05D005224 ORTHO05D006372 8.7e-33 143.3 85 80.0
BcaC07g40762 Brassica carinata HOM05D005224 ORTHO05D006372 8.7e-33 143.3 83 77.1
BcaC07g42731 Brassica carinata HOM05D005224 ORTHO05D006372 8.7e-33 143.3 83 77.1
A05p00270 Brassica napus HOM05D005224 ORTHO05D006372 8.7e-33 143.3 83 77.1
A09p54640 Brassica napus HOM05D005224 ORTHO05D006372 8.7e-33 143.3 83 77.1
C08p37540 Brassica napus HOM05D005224 ORTHO05D006372 8.7e-33 143.3 83 77.1
BraA09t40875Z Brassica rapa HOM05D005224 ORTHO05D006372 8.7e-33 143.3 83 77.1
ECA246G3542 Erigeron canadensis HOM05D005224 ORTHO05D006372 8.7e-33 143.3 86 79.1
Migut.D00213 Erythranthe guttata HOM05D005224 ORTHO05D006372 8.7e-33 143.3 83 79.5
Psat3g022120 Pisum sativum HOM05D005224 ORTHO05D006372 8.7e-33 143.3 85 80.0
Sp5g00730 Schrenkiella parvula HOM05D005224 ORTHO05D006372 8.7e-33 143.3 83 77.1
unitig_0.g663 Utricularia gibba HOM05D005224 ORTHO05D006372 8.7e-33 143.3 85 78.8
BcaB02g07318 Brassica carinata HOM05D005224 ORTHO05D006372 1.1e-32 142.9 85 78.8
BcaB02g08753 Brassica carinata HOM05D005224 ORTHO05D006372 1.1e-32 142.9 83 77.1
BcaNung06420 Brassica carinata HOM05D005224 ORTHO05D006372 1.1e-32 142.9 83 77.1
TPR.G9599 Trifolium pratense HOM05D005224 ORTHO05D006372 1.1e-32 142.9 85 78.8
DCAR_027069 Daucus carota HOM05D005224 ORTHO05D006372 1.5e-32 142.5 85 80.0
Hma1.2p1_1185F.1_g264980 Hydrangea macrophylla HOM05D005224 ORTHO05D006372 1.5e-32 142.5 83 78.3
PSO210G2815 Papaver somniferum HOM05D005224 ORTHO05D006372 1.5e-32 142.5 78 80.8
AL5G45570 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 1.9e-32 142.1 83 77.1
BraA05t19024Z Brassica rapa HOM05D005224 ORTHO05D006372 1.9e-32 142.1 83 77.1
Medtr7g108810 Medicago truncatula HOM05D001413 ORTHO05D001385 1.9e-32 142.1 84 78.6
Zm00001eb039670 Zea mays HOM05D005224 ORTHO05D006372 1.9e-32 142.1 78 80.8
CDE09G0321 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 2.5e-32 141.7 85 75.3
CARHR173060 Cardamine hirsuta HOM05D005224 ORTHO05D006372 3.3e-32 141.4 83 77.1
PSO832G3231 Papaver somniferum HOM05D005224 ORTHO05D006372 3.3e-32 141.4 78 79.5
Potri.002G204800 Populus trichocarpa HOM05D005224 ORTHO05D006372 3.3e-32 141.4 77 83.1
Aa31LG1G29010 Aethionema arabicum HOM05D005224 ORTHO05D006372 4.3e-32 141.0 83 75.9
A07p26090 Brassica napus HOM05D005224 ORTHO05D006372 4.3e-32 141.0 74 83.8
CDE02G3260 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 4.3e-32 141.0 85 75.3
Migut.D02475 Erythranthe guttata HOM05D005224 ORTHO05D006372 5.6e-32 140.6 83 77.1
MBI18_g06871_MAGBIO Magnolia biondii HOM05D005224 ORTHO05D006372 7.4e-32 140.2 84 76.2
Sc25g0004000 Simmondsia chinensis HOM05D005224 ORTHO05D006372 9.6e-32 139.8 102 65.7
Actinidia32220 Actinidia chinensis HOM05D005224 ORTHO05D006372 1.3e-31 139.4 85 76.5
ATR0796G245 Amborella trichopoda HOM05D005224 ORTHO05D006372 1.6e-31 139.0 78 79.5
BolC6t38010H Brassica oleracea HOM05D005224 ORTHO05D006372 1.6e-31 139.0 86 74.4
C06p28410 Brassica napus HOM05D005224 ORTHO05D006372 2.1e-31 138.7 74 82.4
Os08g0556600 Oryza sativa ssp. japonica HOM05D005224 ORTHO05D006372 3.7e-31 137.9 82 79.3
Nitab4.5_0011375g0020 Nicotiana tabacum HOM05D005224 ORTHO05D006372 6.2e-31 137.1 83 74.7
COL.COLO4_23352 Corchorus olitorius HOM05D005224 ORTHO05D006372 1.8e-30 135.6 105 64.8
TAR370G0003 Trochodendron aralioides HOM05D005224 ORTHO05D006372 2.0e-29 132.1 63 92.1
Peaxi162Scf00589g00224 Petunia axillaris HOM05D005224 ORTHO05D006372 2.6e-29 131.7 65 87.7
SHI19781 Sapria himalayana HOM05D005224 ORTHO05D006372 5.8e-29 130.6 74 77.0
Solyc11g005880.2 Solanum lycopersicum HOM05D005224 ORTHO05D006372 3.8e-28 127.9 62 88.7
Sopen11g001830 Solanum pennellii HOM05D005224 ORTHO05D006372 3.8e-28 127.9 62 88.7
SalBow3G4056 Salvia bowleyana HOM05D005224 ORTHO05D006372 6.4e-28 127.1 110 60.0
ECA240G1836 Erigeron canadensis HOM05D002891 ORTHO05D003369 8.4e-28 126.7 74 78.4
Nitab4.5_0000805g0100 Nicotiana tabacum HOM05D005224 ORTHO05D006372 1.1e-27 126.3 61 88.5
PGSC0003DMG400028681 Solanum tuberosum HOM05D005224 ORTHO05D006372 1.4e-27 125.9 61 88.5
CAN.G652.1 Capsicum annuum HOM05D005224 ORTHO05D006372 7.1e-27 123.6 60 86.7
BcaC08g45239 Brassica carinata HOM05D005224 ORTHO05D006372 2.3e-25 118.6 73 74.0
CiPaw.08G095500 Carya illinoinensis HOM05D005224 ORTHO05D006372 1.4e-22 109.4 61 85.2
TAR633G1838 Trochodendron aralioides HOM05D005224 ORTHO05D006372 1.8e-22 109.0 76 65.8
Oeu054123.1 Olea europaea HOM05D005224 ORTHO05D006372 4.0e-22 107.8 50 90.0
BraA07t30257Z Brassica rapa HOM05D005224 ORTHO05D006372 1.2e-21 106.3 50 88.0
HanXRQChr08g0223921 Helianthus annuus HOM05D005224 ORTHO05D006372 2.0e-21 105.5 50 88.0
HanXRQChr09g0263651 Helianthus annuus HOM05D005224 ORTHO05D006372 7.6e-21 103.6 50 86.0
CBR_g52287 Chara braunii HOM05D005224 ORTHO05D006372 4.9e-20 100.9 80 60.0
MD02G1095800 Malus domestica HOM05D005224 ORTHO05D006372 4.9e-20 100.9 49 85.7
Mapoly0155s0025 Marchantia polymorpha HOM05D005224 ORTHO05D006372 6.5e-20 100.5 83 59.0
AagrBONN_evm.TU.Sc2ySwM_344.1353 Anthoceros agrestis HOM05D005224 ORTHO05D006372 2.1e-18 95.5 85 55.3
Pp3c11_13470 Physcomitrium patens HOM05D005224 ORTHO05D006372 6.7e-17 90.5 85 51.8
Pp3c7_20680 Physcomitrium patens HOM05D005224 ORTHO05D006372 1.5e-16 89.4 85 51.8
MCO16G429 Micromonas commoda HOM05D005224 ORTHO05D006372 2.2e-12 75.5 82 45.1
arahy.Tifrunner.gnm1.ann1.YEW5FF Arachis hypogaea HOM05D005224 ORTHO05D006372 1.8e-06 55.8 29 82.8
AUR62015428 Chenopodium quinoa HOM05D005224 ORTHO05D006372 3.1e-06 55.1 23 91.3


User provided reference genes

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